Functional clusters
Information
- Type MapMan
- Description Photosynthesis.photophosphorylation.photosystem II.repair and reassembly cycle.stabilizing factor (ELIP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-8 | 1 | CH_aar_56 | 3 | 3 | 0.0000000124856 |
| Acer truncatum | chr4 | 1 | CH_acertr_4 | 10 | 15 | 9.16345e-31 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 1 | CH_amhyb_123 | 2 | 2 | 0.0000841751 |
| Aquilegia oxysepala | CHR05 | 1 | CH_aox_148 | 2 | 2 | 0.0000801989 |
| Brassica carinata | ChrC01 | 1 | CH_bca_124 | 4 | 9 | 0.00000000121807 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 1 | CH_bvu_65 | 3 | 3 | 0.0000000102821 |
| Camellia sinensis var. sinensis | Chr5 | 1 | CH_camsi_528 | 2 | 2 | 0.0000458547 |
| Cannabis sativa | NC_044376.1 | 1 | CH_cansat_63 | 4 | 8 | 0.0000000000594553 |
| Citrus clementina | scaffold_9 | 1 | CH_ccl_114 | 3 | 3 | 0.0000000100941 |
| Ceratophyllum demersum | 3 | 1 | CH_cde_4 | 5 | 5 | 0.00000000000000175136 |
| Carpinus fangiana | Cfa03 | 1 | CH_cfa_65 | 4 | 10 | 0.000000000273637 |
| Carya illinoinensis | Chr02 | 1 | CH_cil_170 | 3 | 3 | 0.00000000576299 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2000 | 1 | CH_cqu_411 | 2 | 2 | 0.000284293 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3973 | 1 | CH_cqu_589 | 2 | 3 | 0.000852831 |
| Capsella rubella | scaffold_7 | 1 | CH_cru_110 | 3 | 3 | 0.0000000320764 |
| Daucus carota | DCARv2_Chr9 | 1 | CH_dca_283 | 2 | 2 | 0.000191333 |
| Davidia involucrata | GWHABJS00000016 | 1 | CH_din_245 | 2 | 2 | 0.0000500125 |
| Durio zibethinus | NW_019167904.1 | 1 | CH_dzi_225 | 2 | 2 | 0.000139047 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 1 | CH_eca_22 | 5 | 5 | 1.82466e-16 |
| Eucalyptus grandis | Chr02 | 1 | CH_egr_260 | 4 | 6 | 0.0000000000451093 |
| Eutrema salsugineum | scaffold_1 | 1 | CH_esa_300 | 2 | 3 | 0.000685305 |
| Fragaria x ananassa | Fvb2-2 | 1 | CH_fan_186 | 3 | 4 | 0.000000747709 |
| Fragaria vesca | Fvb2 | 1 | CH_fve_186 | 3 | 5 | 0.00000104095 |
| Gossypium raimondii | Chr06 | 1 | CH_gra_241 | 2 | 2 | 0.0000536107 |
| Helianthus annuus | HanXRQChr03 | 1 | CH_han_94 | 5 | 10 | 0.00000000000542058 |
| Helianthus annuus | HanXRQChr03 | 1 | CH_han_99 | 5 | 11 | 0.00000000000993627 |
| Lonicera japonica | GWHAAZE00000003 | 1 | CH_lonja_7 | 11 | 14 | 1.01159e-34 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 1 | CH_lsa_12 | 7 | 11 | 4.79402e-22 |
| Malus domestica | Chr13 | 1 | CH_mdo_253 | 3 | 6 | 0.000000862666 |
| Marchantia polymorpha | scaffold_91 | 1 | CH_mpo_24 | 4 | 4 | 0.0000000429506 |
| Marchantia polymorpha | scaffold_41 | 1 | CH_mpo_6 | 9 | 10 | 4.10557e-22 |
| Marchantia polymorpha | scaffold_50 | 1 | CH_mpo_61 | 3 | 3 | 0.0000370337 |
| Medicago truncatula | chr1 | 1 | CH_mtr_117 | 5 | 23 | 0.000000000000718978 |
| Oryza sativa ssp. japonica | chr07 | 1 | CH_osa_306 | 2 | 2 | 0.000316874 |
| Petunia axillaris | Peaxi162Scf00316 | 1 | CH_pax_3 | 7 | 9 | 3.4399e-22 |
| Physcomitrium patens | Chr16 | 1 | CH_ppa_195 | 3 | 7 | 0.000224325 |
| Physcomitrium patens | Chr03 | 1 | CH_ppa_23 | 4 | 6 | 0.0000000501162 |
| Prunus persica | Pp01 | 1 | CH_ppe_55 | 5 | 5 | 0.00000000000000139373 |
| Pisum sativum | chr6LG2 | 1 | CH_psa_34 | 5 | 24 | 0.00000000000235557 |
| Papaver somniferum | NC_039362.1 | 1 | CH_pso_163 | 4 | 8 | 0.00000000436509 |
| Papaver somniferum | NC_039358.1 | 1 | CH_pso_282 | 3 | 3 | 0.000000426135 |
| Populus trichocarpa | Chr08 | 1 | CH_ptr_67 | 4 | 4 | 0.000000000000579356 |
| Quercus lobata | 6 | 1 | CH_qlo_274 | 5 | 70 | 0.000000000643949 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 1 | CH_rch_124 | 4 | 4 | 0.00000000000665272 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 1 | CH_rch_799 | 2 | 2 | 0.00083717 |
| Rhododendron simsii | chr02 | 1 | CH_rsi_8 | 10 | 10 | 1.37688e-34 |
| Salix brachista | GWHAAZH00000008 | 1 | CH_sbr_57 | 4 | 5 | 0.0000000000562987 |
| Simmondsia chinensis | GWHAASQ00000013 | 1 | CH_sci_146 | 2 | 2 | 0.0000851426 |
| Sequoiadendron giganteum | chr9 | 1 | CH_sgi_57 | 9 | 18 | 4.80857e-25 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_304 | 2 | 2 | 0.0000586941 |
| Solanum pennellii | Spenn-ch09 | 1 | CH_spe_266 | 2 | 2 | 0.000044479 |
| Selenicereus undatus | Scaffold_33677 | 1 | CH_sun_227 | 2 | 4 | 0.000435951 |
| Trochodendron aralioides | group1 | 1 | CH_tar_7 | 7 | 10 | 3.54113e-21 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_21 | 5 | 5 | 5.5936e-16 |
| Zea mays | 7 | 1 | CH_zma_190 | 2 | 2 | 0.000153394 |
| Aethionema arabicum | LG-8 | 2 | CH_aar_56 | 3 | 3 | 0.0000000124856 |
| Acer truncatum | chr4 | 2 | CH_acertr_4 | 10 | 15 | 9.16345e-31 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 2 | CH_amhyb_123 | 2 | 2 | 0.0000841751 |
| Aquilegia oxysepala | CHR05 | 2 | CH_aox_148 | 2 | 2 | 0.0000801989 |
| Brassica carinata | ChrC01 | 2 | CH_bca_124 | 4 | 9 | 0.00000000121807 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 2 | CH_bvu_65 | 3 | 3 | 0.0000000102821 |
| Camellia sinensis var. sinensis | Chr5 | 2 | CH_camsi_528 | 2 | 2 | 0.0000458547 |
| Cannabis sativa | NC_044376.1 | 2 | CH_cansat_63 | 4 | 8 | 0.0000000000594553 |
| Citrus clementina | scaffold_9 | 2 | CH_ccl_114 | 3 | 3 | 0.0000000100941 |
| Ceratophyllum demersum | 3 | 2 | CH_cde_4 | 5 | 5 | 0.00000000000000175136 |
| Carpinus fangiana | Cfa03 | 2 | CH_cfa_65 | 4 | 10 | 0.000000000273637 |
| Carya illinoinensis | Chr02 | 2 | CH_cil_170 | 3 | 3 | 0.00000000576299 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2000 | 2 | CH_cqu_411 | 2 | 2 | 0.000284293 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3973 | 2 | CH_cqu_589 | 2 | 3 | 0.000852831 |
| Capsella rubella | scaffold_7 | 2 | CH_cru_110 | 3 | 3 | 0.0000000320764 |
| Daucus carota | DCARv2_Chr9 | 2 | CH_dca_283 | 2 | 2 | 0.000191333 |
| Davidia involucrata | GWHABJS00000016 | 2 | CH_din_245 | 2 | 2 | 0.0000500125 |
| Durio zibethinus | NW_019167904.1 | 2 | CH_dzi_225 | 2 | 2 | 0.000139047 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 2 | CH_eca_22 | 5 | 5 | 1.82466e-16 |
| Eucalyptus grandis | Chr02 | 2 | CH_egr_260 | 4 | 6 | 0.0000000000451093 |
| Eucalyptus grandis | Chr02 | 2 | CH_egr_933 | 2 | 2 | 0.000877912 |
| Eutrema salsugineum | scaffold_1 | 2 | CH_esa_300 | 2 | 3 | 0.000685305 |
| Fragaria x ananassa | Fvb2-2 | 2 | CH_fan_186 | 3 | 4 | 0.000000747709 |
| Fragaria vesca | Fvb2 | 2 | CH_fve_186 | 3 | 5 | 0.00000104095 |
| Gossypium hirsutum | A09 | 2 | CH_ghi_537 | 2 | 2 | 0.000160209 |
| Gossypium hirsutum | D09 | 2 | CH_ghi_538 | 2 | 2 | 0.000160209 |
| Gossypium raimondii | Chr06 | 2 | CH_gra_241 | 2 | 2 | 0.0000536107 |
| Helianthus annuus | HanXRQChr03 | 2 | CH_han_94 | 5 | 10 | 0.00000000000542058 |
| Helianthus annuus | HanXRQChr03 | 2 | CH_han_99 | 5 | 11 | 0.00000000000993627 |
| Lonicera japonica | GWHAAZE00000003 | 2 | CH_lonja_7 | 11 | 14 | 1.01159e-34 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 2 | CH_lsa_12 | 7 | 11 | 4.79402e-22 |
| Malus domestica | Chr13 | 2 | CH_mdo_253 | 3 | 6 | 0.000000862666 |
| Marchantia polymorpha | scaffold_91 | 2 | CH_mpo_24 | 4 | 4 | 0.0000000429506 |
| Marchantia polymorpha | scaffold_41 | 2 | CH_mpo_6 | 9 | 10 | 4.10557e-22 |
| Marchantia polymorpha | scaffold_50 | 2 | CH_mpo_61 | 3 | 3 | 0.0000370337 |
| Oryza sativa ssp. japonica | chr07 | 2 | CH_osa_306 | 2 | 2 | 0.000316874 |
| Petunia axillaris | Peaxi162Scf00316 | 2 | CH_pax_3 | 7 | 9 | 3.4399e-22 |
| Physcomitrium patens | Chr16 | 2 | CH_ppa_195 | 3 | 7 | 0.000224325 |
| Physcomitrium patens | Chr03 | 2 | CH_ppa_23 | 4 | 6 | 0.0000000501162 |
| Prunus persica | Pp01 | 2 | CH_ppe_55 | 5 | 5 | 0.00000000000000139373 |
| Pisum sativum | chr6LG2 | 2 | CH_psa_34 | 5 | 24 | 0.00000000000235557 |
| Papaver somniferum | NC_039362.1 | 2 | CH_pso_163 | 4 | 8 | 0.00000000436509 |
| Papaver somniferum | NC_039358.1 | 2 | CH_pso_282 | 3 | 3 | 0.000000426135 |
| Populus trichocarpa | Chr08 | 2 | CH_ptr_67 | 4 | 4 | 0.000000000000579356 |
| Quercus lobata | 6 | 2 | CH_qlo_274 | 5 | 70 | 0.000000000643949 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 2 | CH_rch_124 | 4 | 4 | 0.00000000000665272 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 2 | CH_rch_799 | 2 | 2 | 0.00083717 |
| Rhododendron simsii | chr02 | 2 | CH_rsi_8 | 10 | 10 | 1.37688e-34 |
| Salix brachista | GWHAAZH00000008 | 2 | CH_sbr_57 | 4 | 5 | 0.0000000000562987 |
| Simmondsia chinensis | GWHAASQ00000013 | 2 | CH_sci_146 | 2 | 2 | 0.0000851426 |
| Sequoiadendron giganteum | chr9 | 2 | CH_sgi_57 | 9 | 18 | 4.80857e-25 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_304 | 2 | 2 | 0.0000586941 |
| Solanum pennellii | Spenn-ch09 | 2 | CH_spe_266 | 2 | 2 | 0.000044479 |
| Selenicereus undatus | Scaffold_33677 | 2 | CH_sun_227 | 2 | 4 | 0.000435951 |
| Trochodendron aralioides | group1 | 2 | CH_tar_7 | 7 | 10 | 3.54113e-21 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_21 | 5 | 5 | 5.5936e-16 |
| Zea mays | 7 | 2 | CH_zma_190 | 2 | 2 | 0.000153394 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |