Functional clusters
Information
- Type MapMan
- Description Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.component LHCb1/2/3
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_362 | 1 | CH_aag_14 | 6 | 17 | 0.0000000000114269 |
| Anthoceros agrestis | Sc2ySwM_368 | 1 | CH_aag_62 | 3 | 4 | 0.0000262688 |
| Arabidopsis lyrata | scaffold_4 | 1 | CH_aly_443 | 2 | 2 | 0.000990066 |
| Arabidopsis lyrata | scaffold_1 | 1 | CH_aly_444 | 2 | 2 | 0.000990066 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_132 | 3 | 3 | 0.000000103419 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 1 | CH_atr_118 | 3 | 4 | 0.00000132512 |
| Camellia sinensis var. sinensis | Chr8 | 1 | CH_camsi_147 | 4 | 7 | 0.000000000354273 |
| Cannabis sativa | NC_044378.1 | 1 | CH_cansat_377 | 2 | 2 | 0.000656642 |
| Capsicum annuum | PGAv.1.6.scaffold257 | 1 | CH_can_10 | 9 | 10 | 2.20055e-26 |
| Corylus avellana | 2 | 1 | CH_cav_113 | 3 | 3 | 0.000000176353 |
| Chara braunii | BFEA01000226 | 1 | CH_cbr_18 | 4 | 7 | 0.0000000193272 |
| Chara braunii | BFEA01000209 | 1 | CH_cbr_2 | 8 | 22 | 4.95821e-19 |
| Coffea canephora | chr9 | 1 | CH_ccan_77 | 3 | 14 | 0.0000000990295 |
| Citrus clementina | scaffold_2 | 1 | CH_ccl_139 | 3 | 3 | 0.000000100941 |
| Ceratophyllum demersum | 4 | 1 | CH_cde_205 | 4 | 40 | 0.000316337 |
| Ceratophyllum demersum | 1 | 1 | CH_cde_29 | 4 | 7 | 0.000000122963 |
| Ceratophyllum demersum | 6 | 1 | CH_cde_66 | 3 | 4 | 0.0000254396 |
| Carpinus fangiana | Cfa01 | 1 | CH_cfa_28 | 5 | 5 | 0.0000000000000138206 |
| Cardamine hirsuta | Chr1 | 1 | CH_chi_409 | 2 | 2 | 0.000691204 |
| Carya illinoinensis | Chr10 | 1 | CH_cil_499 | 3 | 18 | 0.000394009 |
| Carica papaya | supercontig_67 | 1 | CH_cpa_383 | 2 | 2 | 0.000950661 |
| Chlamydomonas reinhardtii | chromosome_6 | 1 | CH_cre_22 | 4 | 30 | 0.0000151302 |
| Capsella rubella | scaffold_1 | 1 | CH_cru_168 | 3 | 3 | 0.000000673604 |
| Daucus carota | DCARv2_Chr8 | 1 | CH_dca_146 | 3 | 3 | 0.00000134234 |
| Daucus carota | DCARv2_Chr1 | 1 | CH_dca_77 | 4 | 6 | 0.0000000057764 |
| Durio zibethinus | NW_019168037.1 | 1 | CH_dzi_277 | 2 | 2 | 0.000278093 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 1 | CH_eca_110 | 4 | 8 | 0.0000000135571 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 1 | CH_eca_179 | 3 | 3 | 0.000000863818 |
| Eucalyptus grandis | Chr04 | 1 | CH_egr_246 | 4 | 4 | 0.0000000000210526 |
| Erythranthe guttata | scaffold_13 | 1 | CH_egut_23 | 7 | 7 | 2.0028e-18 |
| Erythranthe guttata | scaffold_13 | 1 | CH_egut_238 | 3 | 3 | 0.000012248 |
| Eutrema salsugineum | scaffold_5 | 1 | CH_esa_110 | 3 | 4 | 0.00000121761 |
| Fragaria x ananassa | Fvb6-3 | 1 | CH_fan_602 | 3 | 16 | 0.000746133 |
| Glycine max | Gm16 | 1 | CH_gma_292 | 3 | 8 | 0.0000145133 |
| Helianthus annuus | HanXRQChr15 | 1 | CH_han_251 | 3 | 3 | 0.000000268794 |
| Hydrangea macrophylla | Hma1.2p1_0164F.1 | 1 | CH_hma_382 | 2 | 2 | 0.000666519 |
| Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_139 | 4 | 5 | 0.00000000230322 |
| Lonicera japonica | GWHAAZE00000001 | 1 | CH_lonja_249 | 5 | 67 | 0.00000118235 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 1 | CH_lsa_108 | 4 | 4 | 0.000000000556152 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 1 | CH_lsa_120 | 4 | 5 | 0.00000000278006 |
| Manihot esculenta | Chromosome17 | 1 | CH_mes_189 | 3 | 4 | 0.000000447414 |
| Manihot esculenta | Chromosome01 | 1 | CH_mes_487 | 2 | 2 | 0.000915947 |
| Marchantia polymorpha | scaffold_199 | 1 | CH_mpo_2 | 9 | 9 | 7.63948e-25 |
| Medicago truncatula | chr6 | 1 | CH_mtr_86 | 5 | 6 | 0.000000000000016158 |
| Nicotiana tabacum | Nitab4.5_0000592 | 1 | CH_nta_6 | 6 | 7 | 0.00000000000000752421 |
| Nicotiana tabacum | Nitab4.5_0000982 | 1 | CH_nta_65 | 3 | 3 | 0.00000657425 |
| Olea europaea | chr16 | 1 | CH_oeu_398 | 2 | 2 | 0.000800683 |
| Petunia axillaris | Peaxi162Scf00242 | 1 | CH_pax_148 | 3 | 4 | 0.0000108075 |
| Petunia axillaris | Peaxi162Scf00603 | 1 | CH_pax_30 | 5 | 7 | 0.00000000000772276 |
| Physcomitrium patens | Chr02 | 1 | CH_ppa_4 | 7 | 25 | 0.000000000000339137 |
| Physcomitrium patens | Chr05 | 1 | CH_ppa_72 | 3 | 4 | 0.0000346749 |
| Papaver somniferum | NC_039366.1 | 1 | CH_pso_237 | 6 | 55 | 0.0000000848516 |
| Papaver somniferum | NC_039358.1 | 1 | CH_pso_289 | 5 | 28 | 0.000000538646 |
| Papaver somniferum | NW_020628818.1 | 1 | CH_pso_372 | 5 | 52 | 0.0000140872 |
| Papaver somniferum | NC_039359.1 | 1 | CH_pso_597 | 3 | 6 | 0.00035606 |
| Papaver somniferum | NC_039359.1 | 1 | CH_pso_598 | 3 | 6 | 0.00035606 |
| Papaver somniferum | NC_039362.1 | 1 | CH_pso_95 | 7 | 28 | 0.00000000000185852 |
| Phaseolus vulgaris | Chr04 | 1 | CH_pvu_7 | 11 | 16 | 9.66445e-30 |
| Quercus lobata | 5 | 1 | CH_qlo_435 | 3 | 3 | 0.000000223911 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_296 | 3 | 3 | 0.000000286069 |
| Salvia bowleyana | GWHASIU00000005 | 1 | CH_sbo_185 | 3 | 4 | 0.000000695483 |
| Salvia bowleyana | GWHASIU00000004 | 1 | CH_sbo_210 | 4 | 46 | 0.00000321486 |
| Simmondsia chinensis | GWHAASQ00000005 | 1 | CH_sci_298 | 2 | 2 | 0.000851426 |
| Sechium edule | LG10 | 1 | CH_sed_122 | 3 | 3 | 0.00000218355 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_17 | 8 | 8 | 4.86727e-24 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_217 | 3 | 3 | 0.00000235128 |
| Solanum pennellii | Spenn-ch03 | 1 | CH_spe_108 | 4 | 5 | 0.00000000403822 |
| Solanum pennellii | Spenn-ch02 | 1 | CH_spe_2 | 9 | 9 | 1.05646e-27 |
| Solanum tuberosum | ST4.03ch03 | 1 | CH_stu_11 | 9 | 9 | 5.51299e-26 |
| Solanum tuberosum | ST4.03ch02 | 1 | CH_stu_62 | 7 | 25 | 0.000000000000166975 |
| Trochodendron aralioides | group3 | 1 | CH_tar_76 | 4 | 5 | 0.0000000032486 |
| Theobroma cacao | Chromosome_6 | 1 | CH_tca_388 | 2 | 2 | 0.000439432 |
| Utricularia gibba | unitig_26 | 1 | CH_ugi_4 | 6 | 8 | 0.00000000000000124511 |
| Zea mays | 1 | 1 | CH_zma_274 | 2 | 2 | 0.000766969 |
| Anthoceros agrestis | Sc2ySwM_362 | 2 | CH_aag_14 | 6 | 17 | 0.0000000000114269 |
| Anthoceros agrestis | Sc2ySwM_368 | 2 | CH_aag_62 | 3 | 4 | 0.0000262688 |
| Arabidopsis lyrata | scaffold_4 | 2 | CH_aly_443 | 2 | 2 | 0.000990066 |
| Arabidopsis lyrata | scaffold_1 | 2 | CH_aly_444 | 2 | 2 | 0.000990066 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_132 | 3 | 3 | 0.000000103419 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 2 | CH_atr_118 | 3 | 4 | 0.00000132512 |
| Camellia sinensis var. sinensis | Chr8 | 2 | CH_camsi_147 | 4 | 7 | 0.000000000354273 |
| Cannabis sativa | NC_044378.1 | 2 | CH_cansat_377 | 2 | 2 | 0.000656642 |
| Capsicum annuum | PGAv.1.6.scaffold257 | 2 | CH_can_10 | 9 | 10 | 2.20055e-26 |
| Corylus avellana | 2 | 2 | CH_cav_113 | 3 | 3 | 0.000000176353 |
| Chara braunii | BFEA01000226 | 2 | CH_cbr_18 | 4 | 7 | 0.0000000193272 |
| Chara braunii | BFEA01000209 | 2 | CH_cbr_2 | 8 | 22 | 4.95821e-19 |
| Coffea canephora | chr9 | 2 | CH_ccan_77 | 3 | 14 | 0.0000000990295 |
| Citrus clementina | scaffold_2 | 2 | CH_ccl_139 | 3 | 3 | 0.000000100941 |
| Ceratophyllum demersum | 4 | 2 | CH_cde_205 | 4 | 40 | 0.000316337 |
| Ceratophyllum demersum | 1 | 2 | CH_cde_29 | 4 | 7 | 0.000000122963 |
| Ceratophyllum demersum | 6 | 2 | CH_cde_66 | 3 | 4 | 0.0000254396 |
| Carpinus fangiana | Cfa01 | 2 | CH_cfa_28 | 5 | 5 | 0.0000000000000138206 |
| Cardamine hirsuta | Chr1 | 2 | CH_chi_409 | 2 | 2 | 0.000691204 |
| Carya illinoinensis | Chr10 | 2 | CH_cil_499 | 3 | 18 | 0.000394009 |
| Carica papaya | supercontig_67 | 2 | CH_cpa_383 | 2 | 2 | 0.000950661 |
| Chlamydomonas reinhardtii | chromosome_6 | 2 | CH_cre_22 | 4 | 30 | 0.0000151302 |
| Capsella rubella | scaffold_1 | 2 | CH_cru_168 | 3 | 3 | 0.000000673604 |
| Daucus carota | DCARv2_Chr8 | 2 | CH_dca_146 | 3 | 3 | 0.00000134234 |
| Daucus carota | DCARv2_Chr1 | 2 | CH_dca_77 | 4 | 6 | 0.0000000057764 |
| Durio zibethinus | NW_019168037.1 | 2 | CH_dzi_277 | 2 | 2 | 0.000278093 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 2 | CH_eca_110 | 4 | 8 | 0.0000000135571 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 2 | CH_eca_179 | 3 | 3 | 0.000000863818 |
| Eucalyptus grandis | Chr04 | 2 | CH_egr_246 | 4 | 4 | 0.0000000000210526 |
| Erythranthe guttata | scaffold_13 | 2 | CH_egut_23 | 7 | 7 | 2.0028e-18 |
| Erythranthe guttata | scaffold_13 | 2 | CH_egut_238 | 3 | 3 | 0.000012248 |
| Eutrema salsugineum | scaffold_5 | 2 | CH_esa_110 | 3 | 4 | 0.00000121761 |
| Fragaria x ananassa | Fvb6-3 | 2 | CH_fan_602 | 3 | 16 | 0.000746133 |
| Glycine max | Gm16 | 2 | CH_gma_292 | 3 | 8 | 0.0000145133 |
| Helianthus annuus | HanXRQChr15 | 2 | CH_han_251 | 3 | 3 | 0.000000268794 |
| Hydrangea macrophylla | Hma1.2p1_0164F.1 | 2 | CH_hma_382 | 2 | 2 | 0.000666519 |
| Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_139 | 4 | 5 | 0.00000000230322 |
| Lonicera japonica | GWHAAZE00000001 | 2 | CH_lonja_249 | 5 | 67 | 0.00000118235 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 2 | CH_lsa_108 | 4 | 4 | 0.000000000556152 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 2 | CH_lsa_120 | 4 | 5 | 0.00000000278006 |
| Manihot esculenta | Chromosome17 | 2 | CH_mes_189 | 3 | 4 | 0.000000447414 |
| Manihot esculenta | Chromosome01 | 2 | CH_mes_487 | 2 | 2 | 0.000915947 |
| Marchantia polymorpha | scaffold_199 | 2 | CH_mpo_2 | 9 | 9 | 7.63948e-25 |
| Nicotiana tabacum | Nitab4.5_0000592 | 2 | CH_nta_6 | 6 | 7 | 0.00000000000000752421 |
| Nicotiana tabacum | Nitab4.5_0000982 | 2 | CH_nta_65 | 3 | 3 | 0.00000657425 |
| Olea europaea | chr16 | 2 | CH_oeu_398 | 2 | 2 | 0.000800683 |
| Petunia axillaris | Peaxi162Scf00242 | 2 | CH_pax_148 | 3 | 4 | 0.0000108075 |
| Petunia axillaris | Peaxi162Scf00603 | 2 | CH_pax_30 | 5 | 7 | 0.00000000000772276 |
| Physcomitrium patens | Chr02 | 2 | CH_ppa_4 | 7 | 25 | 0.000000000000339137 |
| Physcomitrium patens | Chr05 | 2 | CH_ppa_72 | 3 | 4 | 0.0000346749 |
| Papaver somniferum | NC_039366.1 | 2 | CH_pso_237 | 6 | 55 | 0.0000000848516 |
| Papaver somniferum | NC_039358.1 | 2 | CH_pso_289 | 5 | 28 | 0.000000538646 |
| Papaver somniferum | NW_020628818.1 | 2 | CH_pso_372 | 5 | 52 | 0.0000140872 |
| Papaver somniferum | NC_039359.1 | 2 | CH_pso_597 | 3 | 6 | 0.00035606 |
| Papaver somniferum | NC_039359.1 | 2 | CH_pso_598 | 3 | 6 | 0.00035606 |
| Papaver somniferum | NC_039362.1 | 2 | CH_pso_95 | 7 | 28 | 0.00000000000185852 |
| Phaseolus vulgaris | Chr04 | 2 | CH_pvu_7 | 11 | 16 | 9.66445e-30 |
| Quercus lobata | 5 | 2 | CH_qlo_435 | 3 | 3 | 0.000000223911 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_296 | 3 | 3 | 0.000000286069 |
| Salvia bowleyana | GWHASIU00000005 | 2 | CH_sbo_185 | 3 | 4 | 0.000000695483 |
| Salvia bowleyana | GWHASIU00000004 | 2 | CH_sbo_210 | 4 | 46 | 0.00000321486 |
| Simmondsia chinensis | GWHAASQ00000005 | 2 | CH_sci_298 | 2 | 2 | 0.000851426 |
| Sechium edule | LG10 | 2 | CH_sed_122 | 3 | 3 | 0.00000218355 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_17 | 8 | 8 | 4.86727e-24 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_217 | 3 | 3 | 0.00000235128 |
| Solanum pennellii | Spenn-ch03 | 2 | CH_spe_108 | 4 | 5 | 0.00000000403822 |
| Solanum pennellii | Spenn-ch02 | 2 | CH_spe_2 | 9 | 9 | 1.05646e-27 |
| Solanum tuberosum | ST4.03ch03 | 2 | CH_stu_11 | 9 | 9 | 5.51299e-26 |
| Solanum tuberosum | ST4.03ch02 | 2 | CH_stu_62 | 7 | 25 | 0.000000000000166975 |
| Trochodendron aralioides | group3 | 2 | CH_tar_76 | 4 | 5 | 0.0000000032486 |
| Theobroma cacao | Chromosome_6 | 2 | CH_tca_388 | 2 | 2 | 0.000439432 |
| Utricularia gibba | unitig_26 | 2 | CH_ugi_4 | 6 | 8 | 0.00000000000000124511 |
| Zea mays | 1 | 2 | CH_zma_274 | 2 | 2 | 0.000766969 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |