Multiplicon view: 2728981 (Experiment Id: 1)

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id	#Species	#Segments	#Anchorpoints	Profile Length
2728981	2	2	7	28

Multiplicon Plot

Options

Draw mode Segment ordering Species

Data Table

Species	Chromosome	First Gene	Last Gene
Camellia sinensis var. sinensis	Chr14	CSS0010961	CSS0038639
Davidia involucrata	GWHABJS00000002	Dinv41836	Dinv41820

Warning (2): include(/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Credits/footer.ctp): failed to open stream: No such file or directory [CORE/Cake/View/View.php, line 971]Code Context        ob_start();

        include $this->__viewFile;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Credits/footer.ctp'
$dataForView = array(
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'instance_settings' => array(
		'credits' => array(),
		'news' => array(),
		'publications' => array(
			'PLAZA4' => array(
				[maximum depth reached]
			)
		),
		'contact' => array()
	),
	'footer_images' => array(
		(int) 0 => 'vib_notag_neg_rgb.png',
		(int) 1 => 'elixir_belgium_inversed.png',
		(int) 2 => 'logo_UGent_EN_RGB_2400_white_cropped.png'
	),
	'funding' => array(
		'VIB' => array(
			'credits_image' => 'VIB_pos_RGB.jpg',
			'footer_image' => 'vib_notag_neg_rgb.png',
			'name' => 'VIB',
			'order' => '1'
		),
		'ELIXIR' => array(
			'credits_image' => 'elixir_belgium.png',
			'footer_image' => 'elixir_belgium_inversed.png',
			'name' => 'ELIXIR',
			'order' => '1'
		),
		'UGENT' => array(
			'credits_image' => 'logo_UGent_EN_RGB_2400_color.png',
			'footer_image' => 'logo_UGent_EN_RGB_2400_white_cropped.png',
			'name' => 'Ghent University',
			'order' => '1'
		)
	),
	'title_for_layout' => 'Dicots PLAZA 5.0 : Credits'
)
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$instance_settings = array(
	'credits' => array(),
	'news' => array(),
	'publications' => array(
		'PLAZA4' => array(
			'link' => 'https://www.ncbi.nlm.nih.gov/pubmed/29069403',
			'reference' => 'Nucleic Acids Res. 2018 Jan 4;46(D1):D1190-D1196',
			'title' => 'PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics',
			'order' => (int) 1
		)
	),
	'contact' => array()
)
$footer_images = array(
	(int) 0 => 'vib_notag_neg_rgb.png',
	(int) 1 => 'elixir_belgium_inversed.png',
	(int) 2 => 'logo_UGent_EN_RGB_2400_white_cropped.png'
)
$funding = array(
	'VIB' => array(
		'credits_image' => 'VIB_pos_RGB.jpg',
		'footer_image' => 'vib_notag_neg_rgb.png',
		'name' => 'VIB',
		'order' => '1'
	),
	'ELIXIR' => array(
		'credits_image' => 'elixir_belgium.png',
		'footer_image' => 'elixir_belgium_inversed.png',
		'name' => 'ELIXIR',
		'order' => '1'
	),
	'UGENT' => array(
		'credits_image' => 'logo_UGent_EN_RGB_2400_color.png',
		'footer_image' => 'logo_UGent_EN_RGB_2400_white_cropped.png',
		'name' => 'Ghent University',
		'order' => '1'
	)
)
$title_for_layout = 'Dicots PLAZA 5.0 : Credits'
include - CORE/Cake/View/View.php, line 971
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
CakeObject::requestAction() - CORE/Cake/Core/CakeObject.php, line 104
include - APP/View/Layouts/default.ctp, line 44
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::renderLayout() - CORE/Cake/View/View.php, line 546
View::render() - CORE/Cake/View/View.php, line 481
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 151

Warning (2): include() [<a href='http://php.net/function.include'>function.include</a>]: Failed opening '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Credits/footer.ctp' for inclusion (include_path='/www/bioinformatics01_ro/plaza/_dev_instances/feedback/lib:.:/opt/remi/php74/root/usr/share/pear:/opt/remi/php74/root/usr/share/php:/usr/share/pear:/usr/share/php') [CORE/Cake/View/View.php, line 971]Code Context        ob_start();

        include $this->__viewFile;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Credits/footer.ctp'
$dataForView = array(
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'instance_settings' => array(
		'credits' => array(),
		'news' => array(),
		'publications' => array(
			'PLAZA4' => array(
				[maximum depth reached]
			)
		),
		'contact' => array()
	),
	'footer_images' => array(
		(int) 0 => 'vib_notag_neg_rgb.png',
		(int) 1 => 'elixir_belgium_inversed.png',
		(int) 2 => 'logo_UGent_EN_RGB_2400_white_cropped.png'
	),
	'funding' => array(
		'VIB' => array(
			'credits_image' => 'VIB_pos_RGB.jpg',
			'footer_image' => 'vib_notag_neg_rgb.png',
			'name' => 'VIB',
			'order' => '1'
		),
		'ELIXIR' => array(
			'credits_image' => 'elixir_belgium.png',
			'footer_image' => 'elixir_belgium_inversed.png',
			'name' => 'ELIXIR',
			'order' => '1'
		),
		'UGENT' => array(
			'credits_image' => 'logo_UGent_EN_RGB_2400_color.png',
			'footer_image' => 'logo_UGent_EN_RGB_2400_white_cropped.png',
			'name' => 'Ghent University',
			'order' => '1'
		)
	),
	'title_for_layout' => 'Dicots PLAZA 5.0 : Credits'
)
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$instance_settings = array(
	'credits' => array(),
	'news' => array(),
	'publications' => array(
		'PLAZA4' => array(
			'link' => 'https://www.ncbi.nlm.nih.gov/pubmed/29069403',
			'reference' => 'Nucleic Acids Res. 2018 Jan 4;46(D1):D1190-D1196',
			'title' => 'PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics',
			'order' => (int) 1
		)
	),
	'contact' => array()
)
$footer_images = array(
	(int) 0 => 'vib_notag_neg_rgb.png',
	(int) 1 => 'elixir_belgium_inversed.png',
	(int) 2 => 'logo_UGent_EN_RGB_2400_white_cropped.png'
)
$funding = array(
	'VIB' => array(
		'credits_image' => 'VIB_pos_RGB.jpg',
		'footer_image' => 'vib_notag_neg_rgb.png',
		'name' => 'VIB',
		'order' => '1'
	),
	'ELIXIR' => array(
		'credits_image' => 'elixir_belgium.png',
		'footer_image' => 'elixir_belgium_inversed.png',
		'name' => 'ELIXIR',
		'order' => '1'
	),
	'UGENT' => array(
		'credits_image' => 'logo_UGent_EN_RGB_2400_color.png',
		'footer_image' => 'logo_UGent_EN_RGB_2400_white_cropped.png',
		'name' => 'Ghent University',
		'order' => '1'
	)
)
$title_for_layout = 'Dicots PLAZA 5.0 : Credits'
include - CORE/Cake/View/View.php, line 971
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
CakeObject::requestAction() - CORE/Cake/Core/CakeObject.php, line 104
include - APP/View/Layouts/default.ctp, line 44
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::renderLayout() - CORE/Cake/View/View.php, line 546
View::render() - CORE/Cake/View/View.php, line 481
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 151

Multiplicon view: 2728981 (Experiment Id: 1)

Multiplicon Information

Multiplicon Plot

Gene Information

Gene Family Information

Options

Data Table