Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p13560 Brassica napus
A03p53360 Brassica napus
Aa31LG6G4310 Aethionema arabicum
Actinidia02342 Actinidia chinensis
Actinidia26886 Actinidia chinensis
AL7G31460 Arabidopsis lyrata
Aqoxy1G03511 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea
AT4G22190 Arabidopsis thaliana
ATR0059G030 Amborella trichopoda
Atru.chr10.2286 Acer truncatum
AUR62021898 Chenopodium quinoa
BcaC09g51153 Brassica carinata
BcaNung00807 Brassica carinata
BcaNung01704 Brassica carinata
BcaNung03755 Brassica carinata
BcaNung03756 Brassica carinata
BolC1t01593H Brassica oleracea
BraA01t01298Z Brassica rapa
BraA03t14400Z Brassica rapa
C01p16430 Brassica napus
C07p51660 Brassica napus
CAN.G1014.49 Capsicum annuum
CANSAT56G2524 Cannabis sativa
CARHR229080 Cardamine hirsuta
Carub.0007s1912 Capsella rubella
Ca_00696_v3 Cicer arietinum L.
Ca_21060_v3 Cicer arietinum L.
CDE04G1983 Ceratophyllum demersum
CDE07G1551 Ceratophyllum demersum
Cfa000158 Carpinus fangiana
Ciclev10015792m.g Citrus clementina
CiPaw.09G098400 Carya illinoinensis
CiPaw.10G074800 Carya illinoinensis
ClCG01G021640 Citrullus lanatus
COL.COLO4_31834 Corchorus olitorius
Cpa.g.sc3209.1 Carica papaya
CsaV3_6G048690 Cucumis sativus L.
CSS0046352 Camellia sinensis var. sinensis
DCAR_002205 Daucus carota
Dinv13941 Davidia involucrata
Duzib192G0344 Durio zibethinus
Duzib235G0420 Durio zibethinus
ECA236G1118 Erigeron canadensis
EL10Ac8g20132 Beta vulgaris
Eucgr.D01366 Eucalyptus grandis
FAN25G1366 Fragaria x ananassa
FvH4_3g01370 Fragaria vesca
Glyma.07G263700 Glycine max
Glyma.09G007852 Glycine max
Glyma.15G112200 Glycine max
Gohir.A05G173300 Gossypium hirsutum
Gohir.A06G151400 Gossypium hirsutum
Gohir.D05G176300 Gossypium hirsutum
Gohir.D06G157600 Gossypium hirsutum
Gorai.009G181700 Gossypium raimondii
Gorai.010G184200 Gossypium raimondii
GSVIVG01004818001 Vitis vinifera
HanXRQChr15g0470781 Helianthus annuus
Haze_06861 Corylus avellana
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla
HPP92_008063 Vanilla planifolia
HPP92_023384 Vanilla planifolia
Lalb_Chr15g0087811 Lupinus albus
Lalb_Chr18g0056781 Lupinus albus
Lj1P1236T60 Lonicera japonica
Lj2P264T22 Lonicera japonica
Lj4g0028181 Lotus japonicus
Lj6g0013804 Lotus japonicus
Lsat_1_v5_gn_4_61701 Lactuca sativa
Lsat_1_v5_gn_7_14880 Lactuca sativa
Manes.16G002700 Manihot esculenta
Manes.17G027100 Manihot esculenta
MBI19_g19808_MAGBIO Magnolia biondii
MD05G1352700 Malus domestica
MD10G1327300 Malus domestica
Medtr2g024980 Medicago truncatula
Medtr4g132690 Medicago truncatula
MELO3C007420.2 Cucumis melo
Migut.H01591 Erythranthe guttata
Migut.M01368 Erythranthe guttata
MSTRG.13128 Avicennia marina
MSTRG.7183 Avicennia marina
Nitab4.5_0000005g0040 Nicotiana tabacum
Nitab4.5_0005882g0010 Nicotiana tabacum
Nitab4.5_0006125g0010 Nicotiana tabacum
Nitab4.5_0009517g0010 Nicotiana tabacum
Nn1g01506 Nelumbo nucifera
Nn1g03388 Nelumbo nucifera
Nn1g06547 Nelumbo nucifera
Nn1g07279 Nelumbo nucifera
Nn2g15240 Nelumbo nucifera
Nn2g15668 Nelumbo nucifera
Nn3g21624 Nelumbo nucifera
Oeu003154.1 Olea europaea
Oeu007154.1 Olea europaea
Oeu049699.1 Olea europaea
Os01g0922100 Oryza sativa ssp. japonica
Os11g0497350 Oryza sativa ssp. japonica
Peaxi162Scf00294g00097 Petunia axillaris
Peaxi162Scf00708g00013 Petunia axillaris
PGR004G2243 Punica granatum
PGR042G2934 Punica granatum
PGSC0003DMG400016725 Solanum tuberosum
Phvul.003G081900 Phaseolus vulgaris
Phvul.006G145400 Phaseolus vulgaris
Potri.004G003900 Populus trichocarpa
Potri.006G270100 Populus trichocarpa
Potri.006G282000 Populus trichocarpa
Potri.006G282500 Populus trichocarpa
Potri.006G283300 Populus trichocarpa
Potri.011G015500 Populus trichocarpa
Prupe.4G014700 Prunus persica
Psat1g175480 Pisum sativum
Psat4g004280 Pisum sativum
PSO210G3984 Papaver somniferum
PSO832G0430 Papaver somniferum
QL05p071740 Quercus lobata
RcHm_v2.0_Chr5g0001991 Rosa chinensis
Rhsim13G0149900 Rhododendron simsii
Sabra04G0002100 Salix brachista
Sabra11G0008600 Salix brachista
Sabra11G0010200 Salix brachista
Sabra11G0011700 Salix brachista
SalBow8G1688 Salvia bowleyana
Sc17g0007590 Simmondsia chinensis
Sed0016463 Sechium edule
Sed0021394 Sechium edule
SGA_v2.0_scaffold4G01894 Striga asiatica
SGA_v2.0_scaffold89G27486 Striga asiatica
Solyc02g081150.1 Solanum lycopersicum
Sopen02g025790 Solanum pennellii
Sp6g04650 Schrenkiella parvula
Sp7g20330 Schrenkiella parvula
TAR626G0621 Trochodendron aralioides
TAR627G0164 Trochodendron aralioides
TAR627G0966 Trochodendron aralioides
THA.LOC104806318 Tarenaya hassleriana
THA.LOC104812981 Tarenaya hassleriana
THA.LOC104813445 Tarenaya hassleriana
Thecc.06G228600 Theobroma cacao
Thhalv10025698m.g Eutrema salsugineum
Thhalv10028862m.g Eutrema salsugineum
TPR.G37047 Trifolium pratense
TWI38G0464 Tripterygium wilfordii
TWI38G0680 Tripterygium wilfordii
TWI63G1509 Tripterygium wilfordii
unitig_26.g9398 Utricularia gibba
unitig_748.g7579 Utricularia gibba
unitig_749.g13622 Utricularia gibba
vmacro03662 Vaccinium macrocarpon
VMungo1215G0904 Vigna mungo
Zm00001eb112850 Zea mays
Zm00001eb143140 Zea mays
Zm00001eb169380 Zea mays

User provided reference genes

Program Settings