Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p24630 Brassica napus
A02p40180 Brassica napus
A06p28270 Brassica napus
A06p35410 Brassica napus
Aa31LG11G3870 Aethionema arabicum
Aa31LG4G18040 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis
Actinidia08719 Actinidia chinensis
Ah.13g069080 Amaranthus hybridus
Ah.13g071030 Amaranthus hybridus
AL5G29390 Arabidopsis lyrata
AL6G36220 Arabidopsis lyrata
Aqoxy5G04391 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea
AT3G49550 Arabidopsis thaliana
AT5G24610 Arabidopsis thaliana
ATR0579G143 Amborella trichopoda
Atru.chr12.2504 Acer truncatum
Atru.chr12.2527 Acer truncatum
AUR62005951 Chenopodium quinoa
AUR62028114 Chenopodium quinoa
BcaB02g09594 Brassica carinata
BcaB07g29917 Brassica carinata
BcaC01g02416 Brassica carinata
BcaC03g17953 Brassica carinata
BcaC09g49961 Brassica carinata
BcaNung01246 Brassica carinata
BcaNung02008 Brassica carinata
BolC1t03007H Brassica oleracea
BolC2t12069H Brassica oleracea
BolC7t44836H Brassica oleracea
BraA01t02375Z Brassica rapa
BraA02t08983Z Brassica rapa
BraA06t25770Z Brassica rapa
BraA06t26464Z Brassica rapa
C02p60130 Brassica napus
C03p65490 Brassica napus
C07p43100 Brassica napus
CAN.G303.55 Capsicum annuum
CANSAT21G0927 Cannabis sativa
CARHR158560 Cardamine hirsuta
CARHR188840 Cardamine hirsuta
Carub.0005s1588 Capsella rubella
Carub.0006s2247 Capsella rubella
Ca_05550_v3 Cicer arietinum L.
Ca_16837_v3 Cicer arietinum L.
Cc02_g00620 Coffea canephora
Ciclev10022731m.g Citrus clementina
CiPaw.05G208600 Carya illinoinensis
CiPaw.06G038500 Carya illinoinensis
ClCG07G009740 Citrullus lanatus
COL.COLO4_14397 Corchorus olitorius
Cpa.g.sc3.184 Carica papaya
Cre07.g345800 Chlamydomonas reinhardtii
CsaV3_4G009710 Cucumis sativus L.
CSS0012455 Camellia sinensis var. sinensis
CSS0032658 Camellia sinensis var. sinensis
CSS0035101 Camellia sinensis var. sinensis
CSS0045456 Camellia sinensis var. sinensis
DCAR_014568 Daucus carota
DCAR_020388 Daucus carota
Duzib205G1429 Durio zibethinus
EL10Ac3g05134 Beta vulgaris
FAN01G2536 Fragaria x ananassa
FAN03G0846 Fragaria x ananassa
FAN10G1296 Fragaria x ananassa
FAN10G4080 Fragaria x ananassa
FvH4_7g33300 Fragaria vesca
Glyma.02G221000 Glycine max
Glyma.04G225900 Glycine max
Glyma.06G138900 Glycine max
Glyma.14G188500 Glycine max
Gohir.A08G106300 Gossypium hirsutum
Gohir.A12G244500 Gossypium hirsutum
Gohir.D08G117700 Gossypium hirsutum
Gohir.D12G245400 Gossypium hirsutum
Gorai.004G126200 Gossypium raimondii
Gorai.008G263000 Gossypium raimondii
GSVIVG01038677001 Vitis vinifera
HanXRQChr01g0002691 Helianthus annuus
Haze_00331 Corylus avellana
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla
Lalb_Chr10g0102981 Lupinus albus
Lj1g0017846 Lotus japonicus
Lj1P1031T30 Lonicera japonica
Lj3P891T43 Lonicera japonica
LjContig00155g0012911 Lotus japonicus
LjContig00312_ERROPOS870357g0003416 Lotus japonicus
Lsat_1_v5_gn_6_117240 Lactuca sativa
Manes.01G050300 Manihot esculenta
Manes.05G195800 Manihot esculenta
Mapoly0204s0014 Marchantia polymorpha
MBI12_g37476_MAGBIO Magnolia biondii
MD01G1231200 Malus domestica
MD07G1303200 Malus domestica
Medtr3g093320 Medicago truncatula
Medtr5g068660 Medicago truncatula
MELO3C024844.2 Cucumis melo
Migut.F00125 Erythranthe guttata
Migut.F00969 Erythranthe guttata
MSTRG.26954 Avicennia marina
Nitab4.5_0000021g0160 Nicotiana tabacum
Nitab4.5_0007121g0060 Nicotiana tabacum
Nn3g18745 Nelumbo nucifera
Oeu055424.1 Olea europaea
Oeu061046.1 Olea europaea
Os10g0509100 Oryza sativa ssp. japonica
Peaxi162Scf01026g00258 Petunia axillaris
PGSC0003DMG400000574 Solanum tuberosum
Phvul.008G188100 Phaseolus vulgaris
Phvul.009G040000 Phaseolus vulgaris
Potri.012G004900 Populus trichocarpa
Potri.015G000900 Populus trichocarpa
PRCOL_00007052 Prasinoderma coloniale
Prupe.2G321900 Prunus persica
Psat2g060520 Pisum sativum
Psat5g071200 Pisum sativum
Psat7g096840 Pisum sativum
QL09p006015 Quercus lobata
RcHm_v2.0_Chr1g0383281 Rosa chinensis
RcHm_v2.0_Chr4g0433201 Rosa chinensis
Rhsim09G0211000 Rhododendron simsii
SalBow2G1279 Salvia bowleyana
SalBow4G0874 Salvia bowleyana
Sc19g0000390 Simmondsia chinensis
Sed0002848 Sechium edule
Sed0024142 Sechium edule
SEGI_20417 Sequoiadendron giganteum
SGA_v2.0_scaffold18G08494 Striga asiatica
SGA_v2.0_scaffold44G16872 Striga asiatica
SMO351G0342 Selaginella moellendorffii
Solyc03g079970.1 Solanum lycopersicum
Sopen03g021700 Solanum pennellii
Sp2g22770 Schrenkiella parvula
Sp5g12560 Schrenkiella parvula
TAR629G0239 Trochodendron aralioides
THA.LOC104799676 Tarenaya hassleriana
THA.LOC104803315 Tarenaya hassleriana
THA.LOC104814957 Tarenaya hassleriana
Thecc.03G211800 Theobroma cacao
Thhalv10005081m.g Eutrema salsugineum
Thhalv10010801m.g Eutrema salsugineum
TPR.G27918 Trifolium pratense
TPR.G35910 Trifolium pratense
TWI23G0412 Tripterygium wilfordii
TWI39G0024 Tripterygium wilfordii
unitig_37.g11998 Utricularia gibba
unitig_92.g28236 Utricularia gibba
vmacro10172 Vaccinium macrocarpon
VMungo0647G0407 Vigna mungo
VMungo1309G2317 Vigna mungo
Zm00001eb043850 Zea mays
Zm00001eb220600 Zea mays

User provided reference genes

Program Settings