Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p09360 Brassica napus
Aa31LG8G9630 Aethionema arabicum
Actinidia40070 Actinidia chinensis
Actinidia40071 Actinidia chinensis
Ah.04g154270 Amaranthus hybridus
Ah.04g154290 Amaranthus hybridus
AL3G37760 Arabidopsis lyrata
Aqoxy5G00276 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.10U64H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CPLC2W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GN45GV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LP1IUI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q63BAR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SCIL2E Arachis hypogaea
AT3G23160 Arabidopsis thaliana
ATR0559G236 Amborella trichopoda
ATR0680G394 Amborella trichopoda
Atru.chr4.2139 Acer truncatum
AUR62002261 Chenopodium quinoa
AUR62015478 Chenopodium quinoa
BcaB06g26448 Brassica carinata
BolC7t41936H Brassica oleracea
BraA07t28732Z Brassica rapa
C07p14410 Brassica napus
CAN.G793.4 Capsicum annuum
CANSAT78G1340 Cannabis sativa
CARHR099090 Cardamine hirsuta
Carub.0003s2337 Capsella rubella
Ca_05395_v3 Cicer arietinum L.
Ca_09814_v3 Cicer arietinum L.
Cc03_g05100 Coffea canephora
CDE02G1756 Ceratophyllum demersum
CDE05G0995 Ceratophyllum demersum
Cfa008352 Carpinus fangiana
Ciclev10004611m.g Citrus clementina
CiPaw.01G188100 Carya illinoinensis
CiPaw.02G115000 Carya illinoinensis
ClCG00G006790 Citrullus lanatus
ClCG06G006830 Citrullus lanatus
COL.COLO4_15825 Corchorus olitorius
Cpa.g.sc44.92 Carica papaya
CsaV3_2G012960 Cucumis sativus L.
CSS0011433 Camellia sinensis var. sinensis
CSS0046882 Camellia sinensis var. sinensis
DCAR_002336 Daucus carota
DCAR_027291 Daucus carota
DCAR_030735 Daucus carota
Dinv29888 Davidia involucrata
Dinv44655 Davidia involucrata
Duzib052G0569 Durio zibethinus
Duzib151G0100 Durio zibethinus
ECA233G1141 Erigeron canadensis
ECA233G3387 Erigeron canadensis
EL10Ac3g05909 Beta vulgaris
Eucgr.H03141 Eucalyptus grandis
FAN12G0506 Fragaria x ananassa
FAN17G0545 Fragaria x ananassa
FvH4_4g03090 Fragaria vesca
Glyma.10G008200 Glycine max
Glyma.10G188300 Glycine max
Glyma.20G087700 Glycine max
Glyma.20G202500 Glycine max
Gohir.1Z049384 Gossypium hirsutum
Gohir.A02G037002 Gossypium hirsutum
Gohir.A09G224900 Gossypium hirsutum
Gohir.D02G043700 Gossypium hirsutum
Gohir.D09G226700 Gossypium hirsutum
Gorai.005G048100 Gossypium raimondii
Gorai.006G248400 Gossypium raimondii
GSVIVG01027725001 Vitis vinifera
HanXRQChr03g0092251 Helianthus annuus
HanXRQChr13g0425491 Helianthus annuus
Haze_11333 Corylus avellana
Hma1.2p1_0310F.1_g120740 Hydrangea macrophylla
HPP92_008404 Vanilla planifolia
HPP92_008405 Vanilla planifolia
HPP92_022627 Vanilla planifolia
Lalb_Chr03g0037091 Lupinus albus
Lalb_Chr19g0128421 Lupinus albus
Lalb_Chr21g0312381 Lupinus albus
Lj5g0006884 Lotus japonicus
Lj6g0000947 Lotus japonicus
Lj6P660T14 Lonicera japonica
Lj6P660T15 Lonicera japonica
Lsat_1_v5_gn_3_122300 Lactuca sativa
Lsat_1_v5_gn_5_71940 Lactuca sativa
Manes.03G167100 Manihot esculenta
Manes.15G038100 Manihot esculenta
Mapoly0061s0047 Marchantia polymorpha
MBI18_g34564_MAGBIO Magnolia biondii
MD13G1210100 Malus domestica
MD16G1213000 Malus domestica
Medtr1g044135 Medicago truncatula
Medtr1g073890 Medicago truncatula
MELO3C031219.2 Cucumis melo
Migut.G00453 Erythranthe guttata
Migut.N00251 Erythranthe guttata
MSTRG.4115 Avicennia marina
MSTRG.9916 Avicennia marina
Nitab4.5_0000342g0210 Nicotiana tabacum
Nitab4.5_0007234g0010 Nicotiana tabacum
Oeu021425.1 Olea europaea
Os04g0169500 Oryza sativa ssp. japonica
Peaxi162Scf00024g00165 Petunia axillaris
PGR004G1950 Punica granatum
PGSC0003DMG400013707 Solanum tuberosum
PGSC0003DMG400017254 Solanum tuberosum
PGSC0003DMG400046674 Solanum tuberosum
Phvul.007G129200 Phaseolus vulgaris
Phvul.007G272000 Phaseolus vulgaris
Potri.008G164700 Populus trichocarpa
Potri.010G074000 Populus trichocarpa
Pp3c13_14500 Physcomitrium patens
Pp3c21_17200 Physcomitrium patens
Pp3c3_15760 Physcomitrium patens
Prupe.1G034600 Prunus persica
Psat6g105520 Pisum sativum
Psat6g132840 Pisum sativum
PSO210G2818 Papaver somniferum
PSO832G0140 Papaver somniferum
QL06p016611 Quercus lobata
RcHm_v2.0_Chr4g0391361 Rosa chinensis
Rhsim04G0188300 Rhododendron simsii
RhsimUnG0178700 Rhododendron simsii
Sabra08G0125300 Salix brachista
Sabra10G0034500 Salix brachista
SalBow2G0103 Salvia bowleyana
SalBow3G1886 Salvia bowleyana
Sc19g0003490 Simmondsia chinensis
Sed0013172 Sechium edule
SEGI_09659 Sequoiadendron giganteum
SGA_v2.0_scaffold101G29831 Striga asiatica
SGA_v2.0_scaffold79G25664 Striga asiatica
SMO358G0669 Selaginella moellendorffii
Solyc09g089640.2 Solanum lycopersicum
Sopen09g032580 Solanum pennellii
Sp3g20810 Schrenkiella parvula
TAR362G0904 Trochodendron aralioides
TAR365G1213 Trochodendron aralioides
TAR542G0001 Trochodendron aralioides
TAR602G0005 Trochodendron aralioides
THA.LOC104804745 Tarenaya hassleriana
THA.LOC104808608 Tarenaya hassleriana
Thecc.04G249600 Theobroma cacao
Thhalv10020490m.g Eutrema salsugineum
TPR.G15880 Trifolium pratense
TPR.G26444 Trifolium pratense
TWI53G0400 Tripterygium wilfordii
TWI53G0538 Tripterygium wilfordii
unitig_747.g21661 Utricularia gibba
unitig_747.g21662 Utricularia gibba
unitig_748.g8314 Utricularia gibba
vmacro08447 Vaccinium macrocarpon
VMungo0720G0129 Vigna mungo
VMungo0720G1782 Vigna mungo
Zm00001eb088190 Zea mays
Zm00001eb130920 Zea mays
Zm00001eb199450 Zea mays
Zm00001eb232990 Zea mays
Zm00001eb293650 Zea mays
Zm00001eb356230 Zea mays

User provided reference genes

Program Settings