Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p03360 Brassica napus
A03p07540 Brassica napus
A03p32980 Brassica napus
A10p23020 Brassica napus
Aa31LG11G13580 Aethionema arabicum
Aa31LG5G13000 Aethionema arabicum
Actinidia15868 Actinidia chinensis
Actinidia36309 Actinidia chinensis
Ah.10g037550 Amaranthus hybridus
Ah.16g101950 Amaranthus hybridus
AL3G11860 Arabidopsis lyrata
AL6G26910 Arabidopsis lyrata
Aqoxy3G00366 Aquilegia oxysepala
Aqoxy3G03921 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea
AT3G02500 Arabidopsis thaliana
AT5G16030 Arabidopsis thaliana
ATR0686G091 Amborella trichopoda
Atru.chr8.826 Acer truncatum
BcaB01g05008 Brassica carinata
BcaB08g36881 Brassica carinata
BcaC01g04442 Brassica carinata
BcaC01g04556 Brassica carinata
BcaC03g18465 Brassica carinata
BcaC04g18914 Brassica carinata
BcaNung02220 Brassica carinata
BolC2t06735H Brassica oleracea
BolC3t13373H Brassica oleracea
BolC3t16277H Brassica oleracea
BolC9t58946H Brassica oleracea
BraA02t05307Z Brassica rapa
BraA03t10082Z Brassica rapa
BraA03t12466Z Brassica rapa
BraA10t44371Z Brassica rapa
C02p08130 Brassica napus
C03p08770 Brassica napus
C03p40110 Brassica napus
C09p60990 Brassica napus
CAN.G144.13 Capsicum annuum
CAN.G23.16 Capsicum annuum
CAN.G358.137 Capsicum annuum
CANSAT64G2567 Cannabis sativa
CARHR076500 Cardamine hirsuta
CARHR197280 Cardamine hirsuta
Carub.0003s0161 Capsella rubella
Carub.0006s1422 Capsella rubella
Cc07_g09010 Coffea canephora
Cfa007945 Carpinus fangiana
Ciclev10012140m.g Citrus clementina
CiPaw.03G059700 Carya illinoinensis
CiPaw.04G040400 Carya illinoinensis
ClCG05G012070 Citrullus lanatus
ClCG11G005360 Citrullus lanatus
COL.COLO4_16191 Corchorus olitorius
Cpa.g.sc179.25 Carica papaya
CsaV3_3G020330 Cucumis sativus L.
CsaV3_5G039140 Cucumis sativus L.
CSS0000095 Camellia sinensis var. sinensis
CSS0011812 Camellia sinensis var. sinensis
CSS0030087 Camellia sinensis var. sinensis
DCAR_017217 Daucus carota
Dinv33929 Davidia involucrata
Dinv34848 Davidia involucrata
Duzib133G1448 Durio zibethinus
ECA246G2173 Erigeron canadensis
EL10Ac2g04606 Beta vulgaris
Eucgr.F02480 Eucalyptus grandis
FAN02G0751 Fragaria x ananassa
FAN05G3990 Fragaria x ananassa
FAN14G2637 Fragaria x ananassa
FvH4_6g45350 Fragaria vesca
Glyma.08G256900 Glycine max
Glyma.13G046900 Glycine max
Glyma.18G281000 Glycine max
Glyma.19G045400 Glycine max
Gohir.A07G071400 Gossypium hirsutum
Gohir.A11G162400 Gossypium hirsutum
Gohir.D07G075900 Gossypium hirsutum
Gohir.D11G168666 Gossypium hirsutum
Gorai.001G080100 Gossypium raimondii
Gorai.007G180200 Gossypium raimondii
GSVIVG01036443001 Vitis vinifera
HanXRQChr12g0376561 Helianthus annuus
Haze_14129 Corylus avellana
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla
Hund13733 Selenicereus undatus
Lalb_Chr06g0174671 Lupinus albus
Lalb_Chr10g0092251 Lupinus albus
Lj1g0022779 Lotus japonicus
Lj2g0026691 Lotus japonicus
Lj4A194T37 Lonicera japonica
Lsat_1_v5_gn_3_80201 Lactuca sativa
Manes.01G108300 Manihot esculenta
MBI09_g05206_MAGBIO Magnolia biondii
MD09G1084800 Malus domestica
MD17G1074300 Malus domestica
Medtr6g017240 Medicago truncatula
Medtr7g018370 Medicago truncatula
MELO3C022089.2 Cucumis melo
MELO3C023762.2 Cucumis melo
Migut.H00200 Erythranthe guttata
Migut.L00303 Erythranthe guttata
MSTRG.23562 Avicennia marina
MSTRG.3576 Avicennia marina
Nitab4.5_0000628g0180 Nicotiana tabacum
Nitab4.5_0004118g0100 Nicotiana tabacum
Nitab4.5_0007207g0030 Nicotiana tabacum
Nitab4.5_0008781g0030 Nicotiana tabacum
Nn3g17760 Nelumbo nucifera
Nn4g23746 Nelumbo nucifera
Oeu030758.1 Olea europaea
Oeu052991.1 Olea europaea
Oeu052993.1 Olea europaea
Peaxi162Scf00501g00012 Petunia axillaris
Peaxi162Scf01327g00136 Petunia axillaris
PGR004G1179 Punica granatum
PGR042G3608 Punica granatum
PGSC0003DMG400024185 Solanum tuberosum
Phvul.004G062900 Phaseolus vulgaris
Phvul.008G020100 Phaseolus vulgaris
Potri.004G102200 Populus trichocarpa
Potri.017G112600 Populus trichocarpa
Prupe.3G239700 Prunus persica
Psat1g012960 Pisum sativum
Psat3g190400 Pisum sativum
PSO017G3409 Papaver somniferum
PSO478G2162 Papaver somniferum
QL02p052558 Quercus lobata
RcHm_v2.0_Chr2g0163131 Rosa chinensis
RcHm_v2.0_Chr4g0404491 Rosa chinensis
Sabra04G0078200 Salix brachista
Sabra17G0093300 Salix brachista
SalBow3G2364 Salvia bowleyana
SalBow3G3548 Salvia bowleyana
SalBow5G1629 Salvia bowleyana
Sc11g0008220 Simmondsia chinensis
Sed0005383 Sechium edule
Sed0007454 Sechium edule
Sed0007873 Sechium edule
SGA_v2.0_scaffold33G13429 Striga asiatica
SGA_v2.0_scaffold49G18089 Striga asiatica
Solyc02g063030.4 Solanum lycopersicum
Solyc02g085750.4 Solanum lycopersicum
Sopen02g014090 Solanum pennellii
Sopen02g030440 Solanum pennellii
Sp6g28100 Schrenkiella parvula
TAR278G0004 Trochodendron aralioides
TAR462G0001 Trochodendron aralioides
THA.LOC104803001 Tarenaya hassleriana
Thecc.04G137500 Theobroma cacao
Thhalv10014096m.g Eutrema salsugineum
TPR.G32452 Trifolium pratense
TPR.G4552 Trifolium pratense
TWI75G1693 Tripterygium wilfordii
TWI79G1555 Tripterygium wilfordii
unitig_32.g11894 Utricularia gibba
vmacro05572 Vaccinium macrocarpon
VMungo0464G1669 Vigna mungo
VMungo1383G2014 Vigna mungo

User provided reference genes

Program Settings