Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p22480 Brassica napus
Aa31LG5G19580 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.942 Anthoceros agrestis
Actinidia13926 Actinidia chinensis
Actinidia33937 Actinidia chinensis
AL1G53000 Arabidopsis lyrata
AL4G37660 Arabidopsis lyrata
Aqoxy3G02946 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0XLH38 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WVY9VA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y6I58B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZTR0B0 Arachis hypogaea
AT1G45248 Arabidopsis thaliana
AT2G40020 Arabidopsis thaliana
ATR0618G177 Amborella trichopoda
Atru.chr12.10 Acer truncatum
AUR62040493 Chenopodium quinoa
AUR62043156 Chenopodium quinoa
BcaB01g03596 Brassica carinata
BcaB02g09060 Brassica carinata
BcaC01g05445 Brassica carinata
BcaC03g15045 Brassica carinata
BolC2t08666H Brassica oleracea
BolC3t15048H Brassica oleracea
BraA03t11475Z Brassica rapa
C03p26630 Brassica napus
CAN.G372.4 Capsicum annuum
CANSAT56G0859 Cannabis sativa
CANSAT56G1147 Cannabis sativa
CARHR134980 Cardamine hirsuta
Carub.0001s3571 Capsella rubella
Carub.0004s2218 Capsella rubella
Ca_05949_v3 Cicer arietinum L.
Ca_10064_v3 Cicer arietinum L.
Cc02_g06750 Coffea canephora
Cc02_g06760 Coffea canephora
Cfa001348 Carpinus fangiana
Ciclev10033546m.g Citrus clementina
CiPaw.16G099300 Carya illinoinensis
CiPaw.16G099400 Carya illinoinensis
ClCG11G006260 Citrullus lanatus
COL.COLO4_25628 Corchorus olitorius
Cpa.g.sc19.211 Carica papaya
CsaV3_6G001730 Cucumis sativus L.
DCAR_024837 Daucus carota
DCAR_032142 Daucus carota
Dinv34408 Davidia involucrata
ECA233G1951 Erigeron canadensis
ECA238G3711 Erigeron canadensis
EL10Ac7g16532 Beta vulgaris
FAN01G2469 Fragaria x ananassa
FAN03G1065 Fragaria x ananassa
FAN06G1003 Fragaria x ananassa
FAN15G2203 Fragaria x ananassa
FAN20G0701 Fragaria x ananassa
FvH4_2g13151 Fragaria vesca
FvH4_7g23100 Fragaria vesca
FvH4_7g24210 Fragaria vesca
Glyma.02G255900 Glycine max
Glyma.06G220600 Glycine max
Glyma.10G159300 Glycine max
Glyma.11G178502 Glycine max
Glyma.16G123400 Glycine max
Glyma.18G211600 Glycine max
Glyma.20G229400 Glycine max
Gohir.A10G234000 Gossypium hirsutum
Gohir.D10G246300 Gossypium hirsutum
Gorai.011G284000 Gossypium raimondii
GSVIVG01032854001 Vitis vinifera
GSVIVG01036658001 Vitis vinifera
HanXRQChr07g0202561 Helianthus annuus
HanXRQChr12g0367471 Helianthus annuus
Haze_17206 Corylus avellana
Haze_18961 Corylus avellana
Haze_25248 Corylus avellana
Hund20200 Selenicereus undatus
Lalb_Chr02g0148591 Lupinus albus
Lalb_Chr10g0105101 Lupinus albus
Lj5g0023773 Lotus japonicus
Lj5g0025792 Lotus japonicus
LjContig00357g0022557 Lotus japonicus
Lsat_1_v5_gn_2_121281 Lactuca sativa
Lsat_1_v5_gn_8_31300 Lactuca sativa
Manes.07G127600 Manihot esculenta
Manes.10G014600 Manihot esculenta
Manes.10G014800 Manihot esculenta
Manes.10G015100 Manihot esculenta
MBI14_g22157_MAGBIO Magnolia biondii
MD01G1149600 Malus domestica
MD17G1067400 Malus domestica
Medtr1g014445 Medicago truncatula
Medtr1g081780 Medicago truncatula
Medtr1g111690 Medicago truncatula
Medtr1g111700 Medicago truncatula
Medtr5g082250 Medicago truncatula
Medtr6g033440 Medicago truncatula
MELO3C029900.2 Cucumis melo
Migut.F00696 Erythranthe guttata
MSTRG.8320 Avicennia marina
Nitab4.5_0000802g0100 Nicotiana tabacum
Nitab4.5_0000802g0120 Nicotiana tabacum
Nitab4.5_0000802g0130 Nicotiana tabacum
Nitab4.5_0005628g0020 Nicotiana tabacum
Nitab4.5_0005628g0030 Nicotiana tabacum
Nitab4.5_0005628g0040 Nicotiana tabacum
Nn2g11433 Nelumbo nucifera
Oeu025174.1 Olea europaea
Os09g0114700 Oryza sativa ssp. japonica
Peaxi162Scf01313g00024 Petunia axillaris
Peaxi162Scf01313g00025 Petunia axillaris
PGR142G2831 Punica granatum
PGR142G2970 Punica granatum
Phvul.007G184700 Phaseolus vulgaris
Phvul.008G225200 Phaseolus vulgaris
Potri.003G104800 Populus trichocarpa
Potri.010G190800 Populus trichocarpa
Prupe.2G247900 Prunus persica
Psat0s288g0040 Pisum sativum
Psat6g147880 Pisum sativum
PSO013G0071 Papaver somniferum
PSO339G3794 Papaver somniferum
PSO339G5625 Papaver somniferum
PSO384G0199 Papaver somniferum
PSO384G4516 Papaver somniferum
PSO832G0699 Papaver somniferum
QL03p000409 Quercus lobata
QL03p072741 Quercus lobata
QL05p066700 Quercus lobata
QL05p072246 Quercus lobata
QL08p006117 Quercus lobata
QL08p063014 Quercus lobata
QL08p063018 Quercus lobata
QL11p005716 Quercus lobata
QL12p030804 Quercus lobata
RcHm_v2.0_Chr1g0369781 Rosa chinensis
RcHm_v2.0_Chr6g0274431 Rosa chinensis
Sabra03G0071800 Salix brachista
SalBow3G2112 Salvia bowleyana
SalBow6G7137 Salvia bowleyana
Sc07g0006300 Simmondsia chinensis
Sed0005546 Sechium edule
SEGI_11125 Sequoiadendron giganteum
SGA_v2.0_scaffold60G21017 Striga asiatica
Solyc06g030540.4 Solanum lycopersicum
Sopen06g008590 Solanum pennellii
Sp4g22330 Schrenkiella parvula
TAR623G1110 Trochodendron aralioides
TAR633G0389 Trochodendron aralioides
THA.LOC104824311 Tarenaya hassleriana
Thecc.10G022800 Theobroma cacao
Thhalv10017194m.g Eutrema salsugineum
TPR.G19854 Trifolium pratense
TPR.G25695 Trifolium pratense
TPR.G25724 Trifolium pratense
TPR.G2715 Trifolium pratense
TWI53G0395 Tripterygium wilfordii
unitig_0.g237 Utricularia gibba
unitig_60.g25678 Utricularia gibba
vmacro06983 Vaccinium macrocarpon
VMungo0720G2983 Vigna mungo
Zm00001eb050100 Zea mays
Zm00001eb050110 Zea mays
Zm00001eb316030 Zea mays

User provided reference genes

Program Settings