Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p10750 Brassica napus
A05p34240 Brassica napus
A10p11290 Brassica napus
Aa31LG3G10040 Aethionema arabicum
Aa31LG8G2430 Aethionema arabicum
Actinidia18775 Actinidia chinensis
Actinidia35242 Actinidia chinensis
Ah.04g164710 Amaranthus hybridus
AL3G27630 Arabidopsis lyrata
AL8G28980 Arabidopsis lyrata
Aqoxy1G02343 Aquilegia oxysepala
Aqoxy4G00711 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.D71PUX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F1NYBZ Arachis hypogaea
AT3G15240 Arabidopsis thaliana
AT5G53900 Arabidopsis thaliana
ATR1094G020 Amborella trichopoda
Atru.chr2.2431 Acer truncatum
AUR62019456 Chenopodium quinoa
AUR62036174 Chenopodium quinoa
BcaB05g22084 Brassica carinata
BcaB06g29547 Brassica carinata
BcaC03g14375 Brassica carinata
BcaC09g48480 Brassica carinata
BolC2t07918H Brassica oleracea
BolC5t33885H Brassica oleracea
BolC9t57273H Brassica oleracea
BraA02t06136Z Brassica rapa
BraA05t22244Z Brassica rapa
BraA10t43221Z Brassica rapa
C02p17870 Brassica napus
C05p52000 Brassica napus
C09p43910 Brassica napus
CAN.G162.40 Capsicum annuum
CANSAT56G0549 Cannabis sativa
CANSAT56G3346 Cannabis sativa
CARHR090220 Cardamine hirsuta
CARHR267020 Cardamine hirsuta
Carub.0003s1489 Capsella rubella
Carub.0008s1420 Capsella rubella
Ca_03517_v3 Cicer arietinum L.
Ca_03524_v3 Cicer arietinum L.
Cc05_g11820 Coffea canephora
CDE05G0758 Ceratophyllum demersum
Cfa020563 Carpinus fangiana
Ciclev10008806m.g Citrus clementina
CiPaw.11G171600 Carya illinoinensis
CiPaw.12G119900 Carya illinoinensis
ClCG11G017910 Citrullus lanatus
COL.COLO4_36706 Corchorus olitorius
Cpa.g.c43713 Carica papaya
CsaV3_4G033540 Cucumis sativus L.
CSS0005710 Camellia sinensis var. sinensis
CSS0014920 Camellia sinensis var. sinensis
CSS0018356 Camellia sinensis var. sinensis
DCAR_019566 Daucus carota
Dinv14933 Davidia involucrata
Dinv20192 Davidia involucrata
Duzib170G0308 Durio zibethinus
Duzib213G0312 Durio zibethinus
Duzib268G0972 Durio zibethinus
Duzib268G1447 Durio zibethinus
ECA234G2098 Erigeron canadensis
ECA240G3101 Erigeron canadensis
EL10Ac4g08223 Beta vulgaris
Eucgr.F03300 Eucalyptus grandis
FAN11G2636 Fragaria x ananassa
FAN16G0887 Fragaria x ananassa
FAN21G3771 Fragaria x ananassa
FAN25G0658 Fragaria x ananassa
FvH4_3g19620 Fragaria vesca
Glyma.06G238400 Glycine max
Glyma.12G163053 Glycine max
Glyma.12G226200 Glycine max
Glyma.13G274700 Glycine max
Gohir.A01G061600 Gossypium hirsutum
Gohir.A04G034100 Gossypium hirsutum
Gohir.D01G048200 Gossypium hirsutum
Gohir.D05G349100 Gossypium hirsutum
Gorai.002G068000 Gossypium raimondii
Gorai.009G379000 Gossypium raimondii
GSVIVG01014299001 Vitis vinifera
HanXRQChr10g0302671 Helianthus annuus
HanXRQChr12g0361151 Helianthus annuus
HanXRQChr12g0364051 Helianthus annuus
Haze_09449 Corylus avellana
Hma1.2p1_0387F.1_g141970 Hydrangea macrophylla
HPP92_012426 Vanilla planifolia
HPP92_014194 Vanilla planifolia
HPP92_026450 Vanilla planifolia
Hund22865 Selenicereus undatus
Lalb_Chr03g0030741 Lupinus albus
Lalb_Chr19g0134141 Lupinus albus
Lalb_Chr20g0109551 Lupinus albus
Lj1A840T51 Lonicera japonica
Lj3g0000525 Lotus japonicus
Lj3g0001154 Lotus japonicus
Lsat_1_v5_gn_5_128181 Lactuca sativa
Lsat_1_v5_gn_9_98881 Lactuca sativa
Manes.15G089000 Manihot esculenta
MBI18_g42039_MAGBIO Magnolia biondii
MD03G1230900 Malus domestica
MD11G1252200 Malus domestica
Medtr2g078750 Medicago truncatula
MELO3C025601.2 Cucumis melo
Migut.H01952 Erythranthe guttata
MSTRG.12896 Avicennia marina
MSTRG.14355 Avicennia marina
Nitab4.5_0002330g0070 Nicotiana tabacum
Nitab4.5_0005232g0020 Nicotiana tabacum
Nitab4.5_0006003g0010 Nicotiana tabacum
Nitab4.5_0007216g0010 Nicotiana tabacum
Nn1g04168 Nelumbo nucifera
Nn1g06457 Nelumbo nucifera
Oeu019304.1 Olea europaea
Oeu025363.1 Olea europaea
Oeu037368.2 Olea europaea
Oeu051080.1 Olea europaea
Os11g0446000 Oryza sativa ssp. japonica
Peaxi162Scf00069g01733 Petunia axillaris
PGR031G3595 Punica granatum
PGSC0003DMG400012407 Solanum tuberosum
Phvul.005G074200 Phaseolus vulgaris
Phvul.011G165100 Phaseolus vulgaris
Potri.001G397800 Populus trichocarpa
Potri.011G116400 Populus trichocarpa
Prupe.2G207300 Prunus persica
Prupe.4G176900 Prunus persica
Psat5g242000 Pisum sativum
PSO541G3729 Papaver somniferum
PSO675G1360 Papaver somniferum
QL08p022567 Quercus lobata
RcHm_v2.0_Chr5g0032811 Rosa chinensis
Rhsim04G0022400 Rhododendron simsii
Sabra11G0102000 Salix brachista
SalBow7G3611 Salvia bowleyana
Sc16g0007140 Simmondsia chinensis
Sed0017133 Sechium edule
SEGI_01970 Sequoiadendron giganteum
SGA_v2.0_scaffold70G23685 Striga asiatica
SMO137G0196 Selaginella moellendorffii
Solyc07g062950.4 Solanum lycopersicum
Sopen07g031140 Solanum pennellii
Sp3g13440 Schrenkiella parvula
Sp6g15960 Schrenkiella parvula
TAR624G1297 Trochodendron aralioides
TAR626G0865 Trochodendron aralioides
TAR626G1901 Trochodendron aralioides
TAR627G0630 Trochodendron aralioides
TAR627G1086 Trochodendron aralioides
THA.LOC104811873 Tarenaya hassleriana
THA.LOC104818088 Tarenaya hassleriana
Thecc.07G095300 Theobroma cacao
Thhalv10013822m.g Eutrema salsugineum
Thhalv10020987m.g Eutrema salsugineum
TPR.G39821 Trifolium pratense
TWI38G0429 Tripterygium wilfordii
TWI38G1311 Tripterygium wilfordii
unitig_0.g2265 Utricularia gibba
vmacro09525 Vaccinium macrocarpon
VMungo1080G0436 Vigna mungo
VMungo1127G0098 Vigna mungo
Zm00001eb150820 Zea mays
Zm00001eb369540 Zea mays

User provided reference genes

Program Settings