Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p39630 Brassica napus
A05p35420 Brassica napus
Aa31LG8G1190 Aethionema arabicum
Actinidia26033 Actinidia chinensis
Actinidia32177 Actinidia chinensis
Actinidia39085 Actinidia chinensis
Ah.08g216670 Amaranthus hybridus
AL3G26190 Arabidopsis lyrata
Aqoxy7G04104 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.BWR49H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R6GQUS Arachis hypogaea
AT3G13990 Arabidopsis thaliana
ATR0598G154 Amborella trichopoda
ATR0598G277 Amborella trichopoda
Atru.chr1.3908 Acer truncatum
AUR62001498 Chenopodium quinoa
AUR62009872 Chenopodium quinoa
BcaB04g20964 Brassica carinata
BcaB06g25412 Brassica carinata
BcaC05g29131 Brassica carinata
BolC1t05009H Brassica oleracea
BolC5t34039H Brassica oleracea
BraA01t04004Z Brassica rapa
BraA05t22352Z Brassica rapa
C01p50590 Brassica napus
C03p25480 Brassica napus
C05p53660 Brassica napus
C06p53980 Brassica napus
CAN.G111.47 Capsicum annuum
CAN.G1387.2 Capsicum annuum
CAN.G1645.14 Capsicum annuum
CAN.G791.2 Capsicum annuum
CANSAT56G1268 Cannabis sativa
CARHR044540 Cardamine hirsuta
CARHR044550 Cardamine hirsuta
CARHR044560 Cardamine hirsuta
Carub.0003s1357 Capsella rubella
Ca_05011_v3 Cicer arietinum L.
Cc04_g01450 Coffea canephora
CDE06G2581 Ceratophyllum demersum
Cfa003544 Carpinus fangiana
Ciclev10024871m.g Citrus clementina
CiPaw.01G220700 Carya illinoinensis
CiPaw.02G136800 Carya illinoinensis
ClCG07G013980 Citrullus lanatus
COL.COLO4_30777 Corchorus olitorius
Cpa.g.sc25.101 Carica papaya
CsaV3_3G043560 Cucumis sativus L.
CSS0015138 Camellia sinensis var. sinensis
Dinv04026 Davidia involucrata
Duzib160G0723 Durio zibethinus
Duzib192G0474 Durio zibethinus
Duzib235G1186 Durio zibethinus
ECA232G4272 Erigeron canadensis
EL10Ac7g16396 Beta vulgaris
Eucgr.F03171 Eucalyptus grandis
FAN02G1223 Fragaria x ananassa
FAN05G1075 Fragaria x ananassa
FAN09G2590 Fragaria x ananassa
FAN14G5417 Fragaria x ananassa
FvH4_6g34480 Fragaria vesca
Glyma.07G036600 Glycine max
Glyma.16G006000 Glycine max
Gohir.A10G052800 Gossypium hirsutum
Gohir.D05G139650 Gossypium hirsutum
Gohir.D10G054600 Gossypium hirsutum
Gorai.011G058000 Gossypium raimondii
GSVIVG01016781001 Vitis vinifera
HanXRQChr09g0276761 Helianthus annuus
Haze_16016 Corylus avellana
Hma1.2p1_0291F.1_g115210 Hydrangea macrophylla
Hma1.2p1_0496F.1_g166170 Hydrangea macrophylla
HPP92_009654 Vanilla planifolia
HPP92_019328 Vanilla planifolia
Hund05746 Selenicereus undatus
Hund18691 Selenicereus undatus
Lalb_Chr01g0013561 Lupinus albus
Lalb_Chr04g0261091 Lupinus albus
Lalb_Chr04g0263361 Lupinus albus
Lalb_Chr25g0281161 Lupinus albus
Lj3g0020734 Lotus japonicus
Lj5A38T42 Lonicera japonica
Lj5C38T16 Lonicera japonica
Lj9A522G68 Lonicera japonica
Lsat_1_v5_gn_4_93840 Lactuca sativa
Manes.04G143100 Manihot esculenta
Manes.11G021900 Manihot esculenta
MBI19_g19956_MAGBIO Magnolia biondii
MBI19_g20410_MAGBIO Magnolia biondii
MD09G1185800 Malus domestica
MD17G1170400 Malus domestica
Medtr8g019650 Medicago truncatula
MELO3C025812.2 Cucumis melo
Migut.I01062 Erythranthe guttata
MSTRG.22553 Avicennia marina
MSTRG.27111 Avicennia marina
Nitab4.5_0000189g0240 Nicotiana tabacum
Nitab4.5_0002879g0100 Nicotiana tabacum
Nitab4.5_0003670g0020 Nicotiana tabacum
Nn6g35587 Nelumbo nucifera
Nn8g38722 Nelumbo nucifera
Oeu007568.1 Olea europaea
Oeu007569.1 Olea europaea
Oeu058720.1 Olea europaea
Os03g0411000 Oryza sativa ssp. japonica
Os06g0206100 Oryza sativa ssp. japonica
Peaxi162Scf00038g01825 Petunia axillaris
Peaxi162Scf00177g00416 Petunia axillaris
PGR119G2563 Punica granatum
Phvul.010G132600 Phaseolus vulgaris
Potri.001G170700 Populus trichocarpa
Potri.003G063300 Populus trichocarpa
Prupe.3G043500 Prunus persica
Psat0s12982g0040 Pisum sativum
Psat4g117680 Pisum sativum
Psat4g183320 Pisum sativum
Psat5g275800 Pisum sativum
Psat6g221240 Pisum sativum
Psat7g060320 Pisum sativum
Psat7g060400 Pisum sativum
Psat7g060480 Pisum sativum
PSO210G0025 Papaver somniferum
PSO210G2002 Papaver somniferum
QL05p008292 Quercus lobata
RcHm_v2.0_Chr2g0144801 Rosa chinensis
Rhsim08G0237300 Rhododendron simsii
Rhsim12G0209100 Rhododendron simsii
RhsimUnG0003800 Rhododendron simsii
RhsimUnG0003900 Rhododendron simsii
RhsimUnG0067200 Rhododendron simsii
RhsimUnG0067300 Rhododendron simsii
Sabra01G0140500 Salix brachista
SalBow6G5309 Salvia bowleyana
Sc12g0010510 Simmondsia chinensis
Sed0000839 Sechium edule
Sed0008578 Sechium edule
SGA_v2.0_scaffold122G33330 Striga asiatica
SGA_v2.0_scaffold71G23865 Striga asiatica
Solyc12g049230.2 Solanum lycopersicum
Sopen12g023680 Solanum pennellii
Sp1g40630 Schrenkiella parvula
Sp3g12240 Schrenkiella parvula
TAR371G0531 Trochodendron aralioides
TAR383G0937 Trochodendron aralioides
TAR624G0141 Trochodendron aralioides
TAR626G0841 Trochodendron aralioides
THA.LOC104810364 Tarenaya hassleriana
THA.LOC104815628 Tarenaya hassleriana
Thecc.06G118000 Theobroma cacao
Thhalv10011240m.g Eutrema salsugineum
TPR.G16457 Trifolium pratense
TWI31G0700 Tripterygium wilfordii
TWI79G0584 Tripterygium wilfordii
unitig_32.g11537 Utricularia gibba
unitig_748.g7593 Utricularia gibba
vmacro17052 Vaccinium macrocarpon
VMungo0331G0816 Vigna mungo
Zm00001eb019770 Zea mays
Zm00001eb030330 Zea mays
Zm00001eb097760 Zea mays
Zm00001eb229110 Zea mays
Zm00001eb235190 Zea mays
Zm00001eb278740 Zea mays
Zm00001eb373630 Zea mays
Zm00001eb388710 Zea mays

User provided reference genes

Program Settings