Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
Actinidia11451 Actinidia chinensis
Actinidia17655 Actinidia chinensis
Actinidia28992 Actinidia chinensis
Aqoxy2G03968 Aquilegia oxysepala
Aqoxy5G01640 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea
ATR0561G250 Amborella trichopoda
ATR0743G026 Amborella trichopoda
Atru.chr4.1600 Acer truncatum
Atru.chr4.1671 Acer truncatum
AUR62020847 Chenopodium quinoa
AUR62023195 Chenopodium quinoa
AUR62023243 Chenopodium quinoa
CAN.G1565.17 Capsicum annuum
CAN.G625.84 Capsicum annuum
CANSAT54G2538 Cannabis sativa
CANSAT78G0306 Cannabis sativa
Ca_05866_v3 Cicer arietinum L.
Ca_17976_v3 Cicer arietinum L.
Ca_29976_v3 Cicer arietinum L.
CBR_g29388 Chara braunii
Cc07_g08200 Coffea canephora
CDE02G0048 Ceratophyllum demersum
CDE05G0646 Ceratophyllum demersum
CDE09G1075 Ceratophyllum demersum
Cfa007846 Carpinus fangiana
Cfa014954 Carpinus fangiana
Ciclev10004964m.g Citrus clementina
CiPaw.01G118000 Carya illinoinensis
CiPaw.03G068200 Carya illinoinensis
ClCG05G010910 Citrullus lanatus
COL.COLO4_20213 Corchorus olitorius
Cpa.g.sc118.40 Carica papaya
Cpa.g.sc83.32 Carica papaya
CsaV3_2G011170 Cucumis sativus L.
CsaV3_3G021670 Cucumis sativus L.
CSS0022501 Camellia sinensis var. sinensis
CSS0027261 Camellia sinensis var. sinensis
DCAR_025876 Daucus carota
DCAR_030819 Daucus carota
Dinv14873 Davidia involucrata
Dinv27207 Davidia involucrata
Dinv38185 Davidia involucrata
Duzib106G0201 Durio zibethinus
Duzib212G0922 Durio zibethinus
ECA232G1788 Erigeron canadensis
ECA238G4613 Erigeron canadensis
EL10Ac2g04487 Beta vulgaris
Eucgr.F02819 Eucalyptus grandis
Eucgr.H02692 Eucalyptus grandis
FAN06G1641 Fragaria x ananassa
FAN07G1461 Fragaria x ananassa
FAN12G1632 Fragaria x ananassa
FvH4_4g13400 Fragaria vesca
FvH4_7g06071 Fragaria vesca
Glyma.02G247200 Glycine max
Glyma.05G153300 Glycine max
Glyma.08G110600 Glycine max
Glyma.14G069000 Glycine max
Glyma.15G117800 Glycine max
Gohir.A05G279600 Gossypium hirsutum
Gohir.A10G128300 Gossypium hirsutum
Gohir.D05G281200 Gossypium hirsutum
Gohir.D10G137600 Gossypium hirsutum
Gorai.009G294600 Gossypium raimondii
Gorai.011G152800 Gossypium raimondii
GSVIVG01021000001 Vitis vinifera
GSVIVG01030867001 Vitis vinifera
HanXRQChr09g0262291 Helianthus annuus
HanXRQChr15g0484241 Helianthus annuus
Haze_11643 Corylus avellana
Haze_14220 Corylus avellana
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla
HPP92_024243 Vanilla planifolia
Hund16204 Selenicereus undatus
Lalb_Chr07g0186771 Lupinus albus
Lalb_Chr10g0104521 Lupinus albus
Lj2P435T33 Lonicera japonica
Lj4g0001711 Lotus japonicus
Lj6P390T29 Lonicera japonica
LjContig00141g0018818 Lotus japonicus
Lsat_1_v5_gn_2_45661 Lactuca sativa
Lsat_1_v5_gn_4_154701 Lactuca sativa
Manes.03G011500 Manihot esculenta
Manes.03G145100 Manihot esculenta
Manes.15G056100 Manihot esculenta
Mapoly0008s0013 Marchantia polymorpha
MBI08_g18909_MAGBIO Magnolia biondii
MBI11_g07416_MAGBIO Magnolia biondii
MD04G1016300 Malus domestica
MD09G1261100 Malus domestica
MD13G1282300 Malus domestica
Medtr5g079680 Medicago truncatula
Medtr8g085190 Medicago truncatula
MELO3C020294.2 Cucumis melo
MELO3C020354.2 Cucumis melo
Migut.H00265 Erythranthe guttata
Migut.N00416 Erythranthe guttata
MSTRG.21980 Avicennia marina
Nitab4.5_0000697g0020 Nicotiana tabacum
Nitab4.5_0002248g0060 Nicotiana tabacum
Nitab4.5_0004399g0090 Nicotiana tabacum
Nitab4.5_0007828g0040 Nicotiana tabacum
Nn3g18884 Nelumbo nucifera
Oeu025033.1 Olea europaea
Oeu047420.1 Olea europaea
Oeu063463.1 Olea europaea
Peaxi162Scf00003g00001 Petunia axillaris
Peaxi162Scf00013g03225 Petunia axillaris
Peaxi162Scf00047g00110 Petunia axillaris
PGR004G2154 Punica granatum
PGSC0003DMG400026424 Solanum tuberosum
Phvul.003G050200 Phaseolus vulgaris
Phvul.008G233700 Phaseolus vulgaris
Potri.001G318600 Populus trichocarpa
Potri.004G088000 Populus trichocarpa
Potri.017G058200 Populus trichocarpa
Prupe.1G163000 Prunus persica
Prupe.3G158400 Prunus persica
Psat2g041040 Pisum sativum
Psat7g073000 Pisum sativum
PSO017G6634 Papaver somniferum
QL06p026437 Quercus lobata
QL11p004173 Quercus lobata
RcHm_v2.0_Chr1g0333501 Rosa chinensis
RcHm_v2.0_Chr1g0334211 Rosa chinensis
RcHm_v2.0_Chr4g0413771 Rosa chinensis
RcHm_v2.0_Chr7g0221661 Rosa chinensis
Rhsim02G0061200 Rhododendron simsii
Rhsim08G0085800 Rhododendron simsii
RhsimUnG0035800 Rhododendron simsii
Sabra04G0058600 Salix brachista
Sabra16G0201600 Salix brachista
Sabra17G0051800 Salix brachista
SalBow3G4435 Salvia bowleyana
Sc11g0008610 Simmondsia chinensis
Sc13g0000310 Simmondsia chinensis
Sed0001983 Sechium edule
Sed0014224 Sechium edule
SEGI_05374 Sequoiadendron giganteum
SEGI_20207 Sequoiadendron giganteum
SGA_v2.0_scaffold149G36490 Striga asiatica
SGA_v2.0_scaffold31G12582 Striga asiatica
SHI01026 Sapria himalayana
SHI19441 Sapria himalayana
Solyc02g091090.4 Solanum lycopersicum
Solyc09g092210.4 Solanum lycopersicum
Sopen02g035740 Solanum pennellii
Sopen09g035130 Solanum pennellii
TAR633G2403 Trochodendron aralioides
TAR636G2161 Trochodendron aralioides
Thecc.04G196500 Theobroma cacao
Thecc.10G175300 Theobroma cacao
TPR.G11799 Trifolium pratense
TPR.G11942 Trifolium pratense
TPR.G3499 Trifolium pratense
unitig_45.g31537 Utricularia gibba
unitig_45.g31538 Utricularia gibba
unitig_578.g16512 Utricularia gibba
unitig_578.g16513 Utricularia gibba
vmacro15560 Vaccinium macrocarpon
VMungo0251G2499 Vigna mungo

User provided reference genes

Program Settings