Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p14360 Brassica napus
A08p20650 Brassica napus
Aa31LG3G10880 Aethionema arabicum
Aa31LG5G12020 Aethionema arabicum
Actinidia03605 Actinidia chinensis
Actinidia30523 Actinidia chinensis
Ah.04g165930 Amaranthus hybridus
AL7G25880 Arabidopsis lyrata
AL8G30440 Arabidopsis lyrata
Aqoxy1G02145 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.M63A4X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZA7LVM Arachis hypogaea
AT4G26960 Arabidopsis thaliana
AT5G54970 Arabidopsis thaliana
ATR0794G061 Amborella trichopoda
Atru.chr6.3183 Acer truncatum
Atru.chr6.3184 Acer truncatum
AUR62012711 Chenopodium quinoa
AUR62015784 Chenopodium quinoa
AUR62020433 Chenopodium quinoa
BcaB01g04337 Brassica carinata
BcaB01g04338 Brassica carinata
BcaB03g12516 Brassica carinata
BcaC01g06332 Brassica carinata
BcaC07g38259 Brassica carinata
BolC3t14094H Brassica oleracea
BolC8t48684H Brassica oleracea
BraA03t10733Z Brassica rapa
BraA08t34019Z Brassica rapa
C03p16740 Brassica napus
C08p10050 Brassica napus
CANSAT64G0797 Cannabis sativa
CARHR234560 Cardamine hirsuta
CARHR268310 Cardamine hirsuta
Carub.0007s1391 Capsella rubella
Carub.0008s1526 Capsella rubella
Ca_01601_v3 Cicer arietinum L.
Ca_22861_v3 Cicer arietinum L.
Cc05_g04620 Coffea canephora
Cfa000218 Carpinus fangiana
Cfa014400 Carpinus fangiana
Ciclev10017196m.g Citrus clementina
CiPaw.03G160000 Carya illinoinensis
ClCG00G003290 Citrullus lanatus
ClCG02G001930 Citrullus lanatus
ClCG02G008700 Citrullus lanatus
COL.COLO4_27711 Corchorus olitorius
Cpa.g.sc12.298 Carica papaya
CsaV3_7G003580 Cucumis sativus L.
CSS0017183 Camellia sinensis var. sinensis
DCAR_024934 Daucus carota
Dinv39711 Davidia involucrata
Duzib213G1052 Durio zibethinus
Duzib248G0799 Durio zibethinus
Duzib251G0280 Durio zibethinus
ECA236G3422 Erigeron canadensis
ECA240G1365 Erigeron canadensis
Eucgr.K00797 Eucalyptus grandis
FAN02G4350 Fragaria x ananassa
FAN05G1963 Fragaria x ananassa
FAN09G1954 Fragaria x ananassa
FAN10G4171 Fragaria x ananassa
FAN14G0586 Fragaria x ananassa
FAN21G2105 Fragaria x ananassa
FAN25G2989 Fragaria x ananassa
FvH4_3g02050 Fragaria vesca
FvH4_6g43180 Fragaria vesca
Glyma.12G193700 Glycine max
Glyma.13G082350 Glycine max
Glyma.13G082600 Glycine max
Glyma.13G308800 Glycine max
Glyma.14G163600 Glycine max
Gohir.A01G080300 Gossypium hirsutum
Gohir.A04G144600 Gossypium hirsutum
Gohir.A12G157600 Gossypium hirsutum
Gohir.D01G067500 Gossypium hirsutum
Gohir.D04G189100 Gossypium hirsutum
Gohir.D12G159800 Gossypium hirsutum
Gorai.002G089400 Gossypium raimondii
Gorai.008G173500 Gossypium raimondii
Gorai.012G184400 Gossypium raimondii
HanXRQChr03g0069481 Helianthus annuus
HanXRQChr16g0504931 Helianthus annuus
Haze_06802 Corylus avellana
Haze_12865 Corylus avellana
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla
Lalb_Chr19g0135871 Lupinus albus
Lalb_Chr24g0393181 Lupinus albus
Lj1g0009560 Lotus japonicus
Lj3g0008615 Lotus japonicus
Lj4g0016348 Lotus japonicus
Lsat_1_v5_gn_7_92201 Lactuca sativa
Lsat_1_v5_gn_9_106500 Lactuca sativa
Manes.03G130000 Manihot esculenta
Manes.13G070200 Manihot esculenta
Manes.15G071300 Manihot esculenta
MBI02_g21879_MAGBIO Magnolia biondii
MD09G1108900 Malus domestica
MD17G1096900 Malus domestica
Medtr2g088320 Medicago truncatula
Medtr8g468940 Medicago truncatula
Medtr8g468960 Medicago truncatula
MELO3C018817.2 Cucumis melo
Migut.H01572 Erythranthe guttata
Migut.M01320 Erythranthe guttata
MSTRG.7209 Avicennia marina
Nn1g03511 Nelumbo nucifera
Oeu002741.1 Olea europaea
Oeu033961.1 Olea europaea
Oeu041920.1 Olea europaea
Os04g0624701 Oryza sativa ssp. japonica
Os06g0679600 Oryza sativa ssp. japonica
PGR083G1220 Punica granatum
PGSC0003DMG400016451 Solanum tuberosum
PGSC0003DMG400016452 Solanum tuberosum
Phvul.005G115200 Phaseolus vulgaris
Phvul.008G166200 Phaseolus vulgaris
Phvul.008G166300 Phaseolus vulgaris
Phvul.008G166400 Phaseolus vulgaris
Potri.006G052300 Populus trichocarpa
Prupe.3G217200 Prunus persica
Psat5g264000 Pisum sativum
PSO541G0095 Papaver somniferum
QL02p054616 Quercus lobata
QL05p073115 Quercus lobata
QL05p073125 Quercus lobata
QL07p015665 Quercus lobata
QL08p033081 Quercus lobata
RcHm_v2.0_Chr2g0159281 Rosa chinensis
RcHm_v2.0_Chr5g0002951 Rosa chinensis
Rhsim06G0162600 Rhododendron simsii
SalBow8G3401 Salvia bowleyana
Sc16g0005970 Simmondsia chinensis
Sed0010410 Sechium edule
Sed0017095 Sechium edule
Sed0017131 Sechium edule
Sed0025347 Sechium edule
SEGI_01426 Sequoiadendron giganteum
SGA_v2.0_scaffold4G01914 Striga asiatica
SGA_v2.0_scaffold7G03838 Striga asiatica
Solyc02g080550.1 Solanum lycopersicum
Solyc02g080560.1 Solanum lycopersicum
Sopen02g025250 Solanum pennellii
Sopen02g025260 Solanum pennellii
Sp1g13240 Schrenkiella parvula
Sp6g16920 Schrenkiella parvula
Sp7g24900 Schrenkiella parvula
TAR626G0532 Trochodendron aralioides
TAR627G0987 Trochodendron aralioides
TAR629G1636 Trochodendron aralioides
THA.LOC104813425 Tarenaya hassleriana
THA.LOC104817668 Tarenaya hassleriana
Thecc.02G314700 Theobroma cacao
Thecc.07G035100 Theobroma cacao
Thhalv10015018m.g Eutrema salsugineum
TPR.G4189 Trifolium pratense
TWI18G0787 Tripterygium wilfordii
TWI75G1275 Tripterygium wilfordii
unitig_0.g942 Utricularia gibba
unitig_744.g24521 Utricularia gibba
VMungo0647G2151 Vigna mungo
VMungo1080G0246 Vigna mungo
Zm00001eb070220 Zea mays
Zm00001eb273730 Zea mays
Zm00001eb431260 Zea mays

User provided reference genes

Program Settings