Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A10p30370 Brassica napus
Aa31LG11G6950 Aethionema arabicum
Aa31sc206G30 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1610 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.1724 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1392 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3440 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.473 Anthoceros agrestis
Actinidia03786 Actinidia chinensis
Actinidia25277 Actinidia chinensis
Actinidia29891 Actinidia chinensis
Actinidia39745 Actinidia chinensis
Ah.09g228420 Amaranthus hybridus
AL6G15840 Arabidopsis lyrata
Aqoxy2G03855 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.H1EJ8W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TIR1N2 Arachis hypogaea
AT5G05920 Arabidopsis thaliana
ATR0789G091 Amborella trichopoda
Atru.chr7.1532 Acer truncatum
AUR62003036 Chenopodium quinoa
AUR62007842 Chenopodium quinoa
AUR62027470 Chenopodium quinoa
AUR62030112 Chenopodium quinoa
AUR62031232 Chenopodium quinoa
BcaB05g21688 Brassica carinata
BcaC06g32302 Brassica carinata
BolC2t06219H Brassica oleracea
BolC9t59847H Brassica oleracea
BraA02t04865Z Brassica rapa
BraA10t45083Z Brassica rapa
C09p70810 Brassica napus
CAN.G1014.11 Capsicum annuum
CAN.G744.9 Capsicum annuum
CANSAT11G0575 Cannabis sativa
CARHR207300 Cardamine hirsuta
Carub.0006s0480 Capsella rubella
Ca_14076_v3 Cicer arietinum L.
Ca_18171_v3 Cicer arietinum L.
CBR_g31495 Chara braunii
Cc06_g10990 Coffea canephora
CDE02G3953 Ceratophyllum demersum
CDE04G2922 Ceratophyllum demersum
Cfa003130 Carpinus fangiana
Ciclev10008698m.g Citrus clementina
CiPaw.03G219400 Carya illinoinensis
CiPaw.12G022300 Carya illinoinensis
ClCG01G007700 Citrullus lanatus
COL.COLO4_19342 Corchorus olitorius
Cpa.g.sc19.251 Carica papaya
Cre01.g018950 Chlamydomonas reinhardtii
Cre08.g369800 Chlamydomonas reinhardtii
CsaV3_5G024780 Cucumis sativus L.
CSS0022162 Camellia sinensis var. sinensis
DCAR_012005 Daucus carota
Dinv36734 Davidia involucrata
Dinv42291 Davidia involucrata
Duzib114G0142 Durio zibethinus
ECA233G2252 Erigeron canadensis
ECA236G1557 Erigeron canadensis
EL10Ac6g14643 Beta vulgaris
Eucgr.C00926 Eucalyptus grandis
FAN19G3030 Fragaria x ananassa
FAN23G1990 Fragaria x ananassa
FAN26G0736 Fragaria x ananassa
FAN26G2529 Fragaria x ananassa
FAN28G1160 Fragaria x ananassa
FvH4_1g06830 Fragaria vesca
Glyma.07G127600 Glycine max
Gohir.A10G194500 Gossypium hirsutum
Gohir.A10G194600 Gossypium hirsutum
Gohir.D10G201600 Gossypium hirsutum
Gohir.D10G201700 Gossypium hirsutum
Gorai.011G226300 Gossypium raimondii
Gorai.011G226400 Gossypium raimondii
GSVIVG01008468001 Vitis vinifera
HanXRQChr04g0112631 Helianthus annuus
HanXRQChr04g0126441 Helianthus annuus
HanXRQChr09g0263461 Helianthus annuus
HanXRQChr13g0409461 Helianthus annuus
HanXRQChr13g0409471 Helianthus annuus
Haze_25874 Corylus avellana
Haze_27186 Corylus avellana
Hma1.2p1_0663F.1_g198701 Hydrangea macrophylla
Hma1.2p1_1074F.1_g254310 Hydrangea macrophylla
HPP92_001732 Vanilla planifolia
HPP92_011031 Vanilla planifolia
HPP92_014582 Vanilla planifolia
HPP92_016636 Vanilla planifolia
HPP92_016662 Vanilla planifolia
HPP92_016663 Vanilla planifolia
Hund18418 Selenicereus undatus
Hund18419 Selenicereus undatus
Lalb_Chr24g0393931 Lupinus albus
Lj1g0019759 Lotus japonicus
Lsat_1_v5_gn_8_88021 Lactuca sativa
Lsat_1_v5_gn_8_88081 Lactuca sativa
Manes.15G104600 Manihot esculenta
Mapoly0001s0219 Marchantia polymorpha
MBI04_g06223_MAGBIO Magnolia biondii
MCO16G096 Micromonas commoda
MD02G1073000 Malus domestica
MD15G1202800 Malus domestica
Medtr8g079080 Medicago truncatula
MELO3C005126.2 Cucumis melo
MELO3C025268.2 Cucumis melo
Migut.J00439 Erythranthe guttata
MSTRG.19533 Avicennia marina
Nitab4.5_0002695g0050 Nicotiana tabacum
Nitab4.5_0007963g0020 Nicotiana tabacum
Nn4g24829 Nelumbo nucifera
Nn4g24830 Nelumbo nucifera
Nn6g35409 Nelumbo nucifera
Oeu052128.1 Olea europaea
Oeu056107.1 Olea europaea
Oeu062208.1 Olea europaea
Oeu062209.1 Olea europaea
Oeu062211.1 Olea europaea
Oeu062213.1 Olea europaea
Os03g0740600 Oryza sativa ssp. japonica
Os09g0421100 Oryza sativa ssp. japonica
Peaxi162Scf00178g01719 Petunia axillaris
Peaxi162Scf00287g00176 Petunia axillaris
PGR142G0935 Punica granatum
Phvul.004G172700 Phaseolus vulgaris
Potri.003G186900 Populus trichocarpa
Pp3c1_32420 Physcomitrium patens
Pp3c2_9490 Physcomitrium patens
PRCOL_00001978 Prasinoderma coloniale
Prupe.7G214500 Prunus persica
Psat7g081120 Pisum sativum
PSO210G0074 Papaver somniferum
PSO210G7296 Papaver somniferum
PSO596G0001 Papaver somniferum
QL02p063435 Quercus lobata
RcHm_v2.0_Chr2g0092611 Rosa chinensis
RcHm_v2.0_Chr6g0296851 Rosa chinensis
Rhsim03G0234600 Rhododendron simsii
Sabra03G0136900 Salix brachista
SalBow6G4427 Salvia bowleyana
Sc14g0000820 Simmondsia chinensis
Sed0017389 Sechium edule
Sed0022999 Sechium edule
SEGI_08410 Sequoiadendron giganteum
SGA_v2.0_scaffold439G51638 Striga asiatica
SGA_v2.0_scaffold439G51649 Striga asiatica
SGA_v2.0_scaffold62G21577 Striga asiatica
SHI02807 Sapria himalayana
SMO337G0022 Selaginella moellendorffii
Solyc02g080790.4 Solanum lycopersicum
Solyc02g080800.4 Solanum lycopersicum
Sopen02g025480 Solanum pennellii
Sopen02g025490 Solanum pennellii
Sp6g36980 Schrenkiella parvula
TAR636G0014 Trochodendron aralioides
THA.LOC104816571 Tarenaya hassleriana
THA.LOC104826863 Tarenaya hassleriana
Thecc.10G003500 Theobroma cacao
Thhalv10013870m.g Eutrema salsugineum
TPR.G38463 Trifolium pratense
TPR.G9556 Trifolium pratense
TWI09G1015 Tripterygium wilfordii
TWI12G1142 Tripterygium wilfordii
unitig_27.g24734 Utricularia gibba
vmacro00113 Vaccinium macrocarpon
vmacro06273 Vaccinium macrocarpon
VMungo0464G2175 Vigna mungo
VMungo0647G1164 Vigna mungo
Zm00001eb085620 Zea mays
Zm00001eb215220 Zea mays

User provided reference genes

Program Settings