Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p40560 Brassica napus
A06p04280 Brassica napus
Aa31LG8G4990 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis
Actinidia35110 Actinidia chinensis
AL1G55300 Arabidopsis lyrata
AL3G31330 Arabidopsis lyrata
Aqoxy3G03975 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C5B8HT Arachis hypogaea
AT1G48635 Arabidopsis thaliana
AT3G18160 Arabidopsis thaliana
ATR0326G049 Amborella trichopoda
Atru.chr9.949 Acer truncatum
AUR62002654 Chenopodium quinoa
AUR62040790 Chenopodium quinoa
BcaB04g18980 Brassica carinata
BcaB04g20791 Brassica carinata
BcaB07g33725 Brassica carinata
BcaC01g03707 Brassica carinata
BcaC08g43072 Brassica carinata
BcaC09g48771 Brassica carinata
BolC3t17231H Brassica oleracea
BolC6t35461H Brassica oleracea
BraA03t13213Z Brassica rapa
BraA06t23631Z Brassica rapa
C03p49370 Brassica napus
C06p03290 Brassica napus
CAN.G1129.31 Capsicum annuum
CAN.G197.13 Capsicum annuum
CANSAT80G1163 Cannabis sativa
CANSAT80G2224 Cannabis sativa
CARHR038280 Cardamine hirsuta
CARHR093480 Cardamine hirsuta
Carub.0001s3778 Capsella rubella
Carub.0003s1787 Capsella rubella
Ca_17220_v3 Cicer arietinum L.
CBR_g38112 Chara braunii
Cc04_g06630 Coffea canephora
CDE02G4061 Ceratophyllum demersum
Cfa024504 Carpinus fangiana
Ciclev10008707m.g Citrus clementina
CiPaw.16G090800 Carya illinoinensis
ClCG06G014470 Citrullus lanatus
COL.COLO4_05870 Corchorus olitorius
Cpa.g.sc3.426 Carica papaya
CsaV3_1G004130 Cucumis sativus L.
CSS0005213 Camellia sinensis var. sinensis
CSS0009925 Camellia sinensis var. sinensis
CSS0012524 Camellia sinensis var. sinensis
CSS0016222 Camellia sinensis var. sinensis
CSS0022680 Camellia sinensis var. sinensis
CSS0032919 Camellia sinensis var. sinensis
CSS0034654 Camellia sinensis var. sinensis
CSS0038011 Camellia sinensis var. sinensis
CSS0040553 Camellia sinensis var. sinensis
CSS0050298 Camellia sinensis var. sinensis
DCAR_011382 Daucus carota
Dinv24643 Davidia involucrata
Dinv29939 Davidia involucrata
Duzib068G1457 Durio zibethinus
Duzib084G0729 Durio zibethinus
Duzib205G0470 Durio zibethinus
ECA240G4334 Erigeron canadensis
ECA246G4025 Erigeron canadensis
EL10Ac8g19603 Beta vulgaris
Eucgr.B00855 Eucalyptus grandis
FAN04G3108 Fragaria x ananassa
FAN08G3349 Fragaria x ananassa
FAN13G0599 Fragaria x ananassa
FAN18G1515 Fragaria x ananassa
FvH4_5g17050 Fragaria vesca
Glyma.05G243700 Glycine max
Glyma.08G051500 Glycine max
Gohir.A09G051300 Gossypium hirsutum
Gohir.D08G140100 Gossypium hirsutum
Gohir.D09G052400 Gossypium hirsutum
Gohir.D13G126266 Gossypium hirsutum
Gorai.004G122400 Gossypium raimondii
Gorai.006G057200 Gossypium raimondii
Gorai.007G186700 Gossypium raimondii
Gorai.008G042300 Gossypium raimondii
Gorai.008G062000 Gossypium raimondii
GSVIVG01008387001 Vitis vinifera
GSVIVG01008394001 Vitis vinifera
HanXRQChr05g0144521 Helianthus annuus
Haze_18790 Corylus avellana
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla
HPP92_008203 Vanilla planifolia
Hund22655 Selenicereus undatus
Lalb_Chr05g0221871 Lupinus albus
Lalb_Chr09g0330521 Lupinus albus
Lalb_Chr16g0387141 Lupinus albus
Lj4g0012439 Lotus japonicus
Lj9A421T102 Lonicera japonica
Lsat_1_v5_gn_3_1001 Lactuca sativa
Manes.06G008500 Manihot esculenta
Mapoly0003s0191 Marchantia polymorpha
MBI10_g07297_MAGBIO Magnolia biondii
MBI16_g47222_MAGBIO Magnolia biondii
MBI16_g47372_MAGBIO Magnolia biondii
MD00G1160600 Malus domestica
MD14G1233700 Malus domestica
Medtr8g106780 Medicago truncatula
MELO3C017339.2 Cucumis melo
Migut.D01447 Erythranthe guttata
MSTRG.4560 Avicennia marina
MSTRG.9285 Avicennia marina
Nitab4.5_0000150g0110 Nicotiana tabacum
Nitab4.5_0001158g0020 Nicotiana tabacum
Nitab4.5_0012369g0030 Nicotiana tabacum
Nitab4.5_0012395g0010 Nicotiana tabacum
Nn3g18057 Nelumbo nucifera
Nn4g24077 Nelumbo nucifera
Oeu017505.1 Olea europaea
Oeu017507.1 Olea europaea
Oeu053224.1 Olea europaea
Os09g0314300 Oryza sativa ssp. japonica
Peaxi162Scf00683g00231 Petunia axillaris
Peaxi162Scf01127g00030 Petunia axillaris
PGR083G2774 Punica granatum
PGSC0003DMG400015821 Solanum tuberosum
PGSC0003DMG400015822 Solanum tuberosum
PGSC0003DMG402005658 Solanum tuberosum
Phvul.002G327400 Phaseolus vulgaris
Potri.012G049700 Populus trichocarpa
Potri.015G041700 Populus trichocarpa
Pp3c20_5170 Physcomitrium patens
Pp3c24_12050 Physcomitrium patens
Pp3c8_16550 Physcomitrium patens
Prupe.5G229900 Prunus persica
Psat0s3278g0200 Pisum sativum
Psat7g003880 Pisum sativum
PSO063G7528 Papaver somniferum
PSO782G2563 Papaver somniferum
QL10p027517 Quercus lobata
RcHm_v2.0_Chr7g0178801 Rosa chinensis
Rhsim07G0079200 Rhododendron simsii
RhsimUnG0064800 Rhododendron simsii
Sabra15G0055400 Salix brachista
Sabra15G0063000 Salix brachista
SalBow1G1036 Salvia bowleyana
Sc12g0007380 Simmondsia chinensis
Sed0007305 Sechium edule
Sed0027899 Sechium edule
SEGI_01637 Sequoiadendron giganteum
SEGI_04696 Sequoiadendron giganteum
SGA_v2.0_scaffold171G38932 Striga asiatica
SMO367G0254 Selaginella moellendorffii
Solyc03g119030.4 Solanum lycopersicum
Solyc12g040480.2 Solanum lycopersicum
Solyc12g040500.2 Solanum lycopersicum
Sopen03g037920 Solanum pennellii
Sopen12g020080 Solanum pennellii
Sopen12g020100 Solanum pennellii
Sp1g35610 Schrenkiella parvula
Sp3g16270 Schrenkiella parvula
TAR622G1360 Trochodendron aralioides
TAR629G1642 Trochodendron aralioides
THA.LOC104820369 Tarenaya hassleriana
THA.LOC104821836 Tarenaya hassleriana
Thecc.03G048800 Theobroma cacao
Thhalv10011573m.g Eutrema salsugineum
Thhalv10020989m.g Eutrema salsugineum
TPR.G12929 Trifolium pratense
TWI81G0085 Tripterygium wilfordii
unitig_0.g802 Utricularia gibba
vmacro16528 Vaccinium macrocarpon
VMungo0251G1482 Vigna mungo
Zm00001eb098030 Zea mays

User provided reference genes

Program Settings