Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p22390 Brassica napus
A09p48020 Brassica napus
Aa31sc33G70 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis
Actinidia13840 Actinidia chinensis
Actinidia29191 Actinidia chinensis
Ah.10g033080 Amaranthus hybridus
AL5G36110 Arabidopsis lyrata
AL5G36120 Arabidopsis lyrata
Aqoxy4G03159 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea
AT3G55000 Arabidopsis thaliana
AT3G55005 Arabidopsis thaliana
ATR0594G132 Amborella trichopoda
Atru.chr12.610 Acer truncatum
AUR62035988 Chenopodium quinoa
AUR62036011 Chenopodium quinoa
AUR62041612 Chenopodium quinoa
BcaB01g00136 Brassica carinata
BcaB02g07705 Brassica carinata
BcaC08g44716 Brassica carinata
BcaNung04652 Brassica carinata
BolC6t37445H Brassica oleracea
BolC8t50631H Brassica oleracea
BraA07t29915Z Brassica rapa
BraA09t40255Z Brassica rapa
C06p22550 Brassica napus
C08p30240 Brassica napus
CAN.G186.31 Capsicum annuum
CANSAT56G1305 Cannabis sativa
CARHR165000 Cardamine hirsuta
CARHR165010 Cardamine hirsuta
Carub.0005s2162 Capsella rubella
Carub.0005s2163 Capsella rubella
Ca_11380_v3 Cicer arietinum L.
CBR_g10977 Chara braunii
Cc09_g02350 Coffea canephora
CDE02G0952 Ceratophyllum demersum
CDE09G0608 Ceratophyllum demersum
Cfa001574 Carpinus fangiana
Ciclev10032445m.g Citrus clementina
CiPaw.01G278000 Carya illinoinensis
CiPaw.02G177500 Carya illinoinensis
ClCG09G020350 Citrullus lanatus
COL.COLO4_23777 Corchorus olitorius
Cpa.g.sc1.281 Carica papaya
CsaV3_5G026080 Cucumis sativus L.
CSS0002243 Camellia sinensis var. sinensis
CSS0011111 Camellia sinensis var. sinensis
CSS0025505 Camellia sinensis var. sinensis
CSS0036351 Camellia sinensis var. sinensis
CSS0046661 Camellia sinensis var. sinensis
DCAR_015251 Daucus carota
DCAR_019150 Daucus carota
Dinv11820 Davidia involucrata
Dinv31376 Davidia involucrata
Duzib114G0791 Durio zibethinus
Duzib128G0096 Durio zibethinus
ECA238G2056 Erigeron canadensis
EL10Ac2g03538 Beta vulgaris
Eucgr.J01137 Eucalyptus grandis
FAN01G2342 Fragaria x ananassa
FAN03G0045 Fragaria x ananassa
FAN06G1180 Fragaria x ananassa
FAN06G2469 Fragaria x ananassa
FAN06G2832 Fragaria x ananassa
FAN10G1795 Fragaria x ananassa
FvH4_7g20520 Fragaria vesca
Glyma.10G294300 Glycine max
Glyma.20G244200 Glycine max
Gohir.A05G343700 Gossypium hirsutum
Gohir.A10G208060 Gossypium hirsutum
Gohir.D04G082100 Gossypium hirsutum
Gohir.D10G216200 Gossypium hirsutum
Gorai.011G241800 Gossypium raimondii
Gorai.012G092700 Gossypium raimondii
GSVIVG01032647001 Vitis vinifera
HanXRQChr07g0200921 Helianthus annuus
HanXRQChr12g0367731 Helianthus annuus
HanXRQChr14g0460861 Helianthus annuus
HanXRQChr17g0557371 Helianthus annuus
Haze_16954 Corylus avellana
HPP92_017944 Vanilla planifolia
HPP92_019786 Vanilla planifolia
Hund22456 Selenicereus undatus
Lalb_Chr02g0144171 Lupinus albus
Lalb_Chr06g0164371 Lupinus albus
Lalb_Chr21g0307521 Lupinus albus
Lj1A928T58 Lonicera japonica
Lj1C926T5 Lonicera japonica
Lj5g0020432 Lotus japonicus
Lj8A94T49 Lonicera japonica
Lsat_1_v5_gn_2_115481 Lactuca sativa
Lsat_1_v5_gn_8_21240 Lactuca sativa
Manes.07G104700 Manihot esculenta
Manes.10G040500 Manihot esculenta
Mapoly0066s0078 Marchantia polymorpha
MCO05G642 Micromonas commoda
MD01G1114200 Malus domestica
MD07G1182100 Malus domestica
Medtr1g116240 Medicago truncatula
MELO3C025490.2 Cucumis melo
Migut.F01787 Erythranthe guttata
Migut.F02015 Erythranthe guttata
MSTRG.27450 Avicennia marina
MSTRG.9196 Avicennia marina
Nitab4.5_0000691g0240 Nicotiana tabacum
Nitab4.5_0000830g0100 Nicotiana tabacum
Nitab4.5_0001248g0030 Nicotiana tabacum
Nitab4.5_0004104g0120 Nicotiana tabacum
Nn2g10608 Nelumbo nucifera
Nn2g12956 Nelumbo nucifera
Nn6g33815 Nelumbo nucifera
Oeu055063.1 Olea europaea
Oeu057248.1 Olea europaea
Os11g0102600 Oryza sativa ssp. japonica
Os12g0102200 Oryza sativa ssp. japonica
Peaxi162Scf00195g00824 Petunia axillaris
Peaxi162Scf01024g00120 Petunia axillaris
PGR044G2197 Punica granatum
PGSC0003DMG400032551 Solanum tuberosum
Phvul.007G005800 Phaseolus vulgaris
Potri.008G046000 Populus trichocarpa
Potri.010G215500 Populus trichocarpa
Pp3c14_5580 Physcomitrium patens
PRCOL_00000040 Prasinoderma coloniale
Prupe.2G220800 Prunus persica
Psat6g240040 Pisum sativum
PSO339G0239 Papaver somniferum
PSO339G2647 Papaver somniferum
PSO384G2137 Papaver somniferum
QL08p057270 Quercus lobata
RcHm_v2.0_Chr1g0364411 Rosa chinensis
RcHm_v2.0_Chr2g0140211 Rosa chinensis
Rhsim02G0133600 Rhododendron simsii
Rhsim09G0154900 Rhododendron simsii
Sabra08G0032300 Salix brachista
Sabra10G0166500 Salix brachista
SalBow3G2899 Salvia bowleyana
Sc20g0002230 Simmondsia chinensis
Sc20g0002240 Simmondsia chinensis
Sed0000226 Sechium edule
Sed0003028 Sechium edule
SEGI_13922 Sequoiadendron giganteum
SEGI_35779 Sequoiadendron giganteum
SGA_v2.0_scaffold329G48849 Striga asiatica
SGA_v2.0_scaffold62G21447 Striga asiatica
SHI42769 Sapria himalayana
SMO356G0399 Selaginella moellendorffii
Solyc04g009550.3 Solanum lycopersicum
Solyc04g049710.3 Solanum lycopersicum
Sopen04g004710 Solanum pennellii
Sopen04g019960 Solanum pennellii
Sp5g07420 Schrenkiella parvula
Sp5g07430 Schrenkiella parvula
TAR623G0696 Trochodendron aralioides
TAR624G0784 Trochodendron aralioides
TAR633G2252 Trochodendron aralioides
THA.LOC104810167 Tarenaya hassleriana
THA.LOC104824242 Tarenaya hassleriana
THA.LOC104825886 Tarenaya hassleriana
Thecc.10G065000 Theobroma cacao
Thhalv10010647m.g Eutrema salsugineum
Thhalv10010676m.g Eutrema salsugineum
TPR.G10390 Trifolium pratense
TWI15G0393 Tripterygium wilfordii
TWI63G0288 Tripterygium wilfordii
unitig_0.g190 Utricularia gibba
VMungo0720G0811 Vigna mungo
Zm00001eb094350 Zea mays
Zm00001eb163130 Zea mays

User provided reference genes

Program Settings