Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p10340 Brassica napus
A10p19170 Brassica napus
Aa31LG1G13870 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4022 Anthoceros agrestis
Actinidia29778 Actinidia chinensis
Actinidia37961 Actinidia chinensis
Ah.07g202860 Amaranthus hybridus
Ah.13g073410 Amaranthus hybridus
AL6G32440 Arabidopsis lyrata
Aqoxy6G01859 Aquilegia oxysepala
Aqoxy7G00805 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.456QL1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N7I05Z Arachis hypogaea
AT5G20890 Arabidopsis thaliana
ATR0049G084 Amborella trichopoda
Atru.chr13.180 Acer truncatum
AUR62002414 Chenopodium quinoa
AUR62023775 Chenopodium quinoa
BcaB05g22804 Brassica carinata
BcaB08g37325 Brassica carinata
BcaC03g13811 Brassica carinata
BcaC04g19481 Brassica carinata
BcaNung05758 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p01290 Brassica napus
BolC2t07080H Brassica oleracea
BolC3t13657H Brassica oleracea
BolC9t58390H Brassica oleracea
BraA02t05601Z Brassica rapa
BraA03t10345Z Brassica rapa
BraA10t43992Z Brassica rapa
C02p10490 Brassica napus
C03p11870 Brassica napus
C09p55210 Brassica napus
CAN.G1001.51 Capsicum annuum
CAN.G1432.19 Capsicum annuum
CAN.G546.19 Capsicum annuum
CARHR191960 Cardamine hirsuta
Carub.0006s1918 Capsella rubella
Ca_05203_v3 Cicer arietinum L.
Ca_07625_v3 Cicer arietinum L.
CBR_g20448 Chara braunii
Cc01_g07800 Coffea canephora
Cc10_g11400 Coffea canephora
CDE09G0059 Ceratophyllum demersum
Cfa014030 Carpinus fangiana
Cfa026985 Carpinus fangiana
Ciclev10000836m.g Citrus clementina
CiPaw.07G141600 Carya illinoinensis
CiPaw.08G070800 Carya illinoinensis
ClCG11G001640 Citrullus lanatus
COL.COLO4_26052 Corchorus olitorius
Cpa.g.sc26.235 Carica papaya
Cre09.g416750 Chlamydomonas reinhardtii
CsaV3_2G001340 Cucumis sativus L.
CSS0001931 Camellia sinensis var. sinensis
CSS0037161 Camellia sinensis var. sinensis
DCAR_009520 Daucus carota
Dinv31912 Davidia involucrata
Dinv32530 Davidia involucrata
Dinv39570 Davidia involucrata
Duzib041G0210 Durio zibethinus
Duzib093G1085 Durio zibethinus
Duzib116G0529 Durio zibethinus
Duzib133G0408 Durio zibethinus
ECA240G2245 Erigeron canadensis
EL10Ac3g06108 Beta vulgaris
Eucgr.F01711 Eucalyptus grandis
Eucgr.F03537 Eucalyptus grandis
FAN15G3656 Fragaria x ananassa
FAN20G0278 Fragaria x ananassa
FAN27G1567 Fragaria x ananassa
FvH4_2g37790 Fragaria vesca
Glyma.11G185500 Glycine max
Glyma.12G087300 Glycine max
Gohir.A05G181500 Gossypium hirsutum
Gohir.A05G255100 Gossypium hirsutum
Gohir.D05G184500 Gossypium hirsutum
Gohir.D05G256700 Gossypium hirsutum
Gorai.009G190000 Gossypium raimondii
Gorai.009G268200 Gossypium raimondii
GSVIVG01008708001 Vitis vinifera
HanXRQChr02g0048731 Helianthus annuus
HanXRQChr05g0150641 Helianthus annuus
HanXRQChr05g0150651 Helianthus annuus
Haze_22737 Corylus avellana
Haze_26336 Corylus avellana
Hma1.2p1_0149F.1_g066520 Hydrangea macrophylla
Hma1.2p1_1100F.1_g257110 Hydrangea macrophylla
Hma1.2p1_1100F.1_g257140 Hydrangea macrophylla
HPP92_017262 Vanilla planifolia
HPP92_017263 Vanilla planifolia
Hund12360 Selenicereus undatus
Lalb_Chr03g0043101 Lupinus albus
Lalb_Chr19g0124741 Lupinus albus
Lj1g0004523 Lotus japonicus
Lj4A877T44 Lonicera japonica
Lj4A930T44 Lonicera japonica
Lj6g0017523 Lotus japonicus
Lsat_1_v5_gn_3_23880 Lactuca sativa
Lsat_1_v5_gn_5_47521 Lactuca sativa
Manes.05G141000 Manihot esculenta
Manes.18G007600 Manihot esculenta
Mapoly0071s0007 Marchantia polymorpha
MBI08_g05384_MAGBIO Magnolia biondii
MCO14G488 Micromonas commoda
MD08G1005100 Malus domestica
MD15G1004500 Malus domestica
Medtr7g067470 Medicago truncatula
Medtr7g113470 Medicago truncatula
MELO3C004636.2 Cucumis melo
Migut.C00506 Erythranthe guttata
MSTRG.22358 Avicennia marina
MSTRG.24226 Avicennia marina
Nitab4.5_0000329g0270 Nicotiana tabacum
Nitab4.5_0001163g0130 Nicotiana tabacum
Nitab4.5_0005092g0060 Nicotiana tabacum
Nitab4.5_0012306g0010 Nicotiana tabacum
Nn1g03634 Nelumbo nucifera
Nn2g11831 Nelumbo nucifera
Nn4g25474 Nelumbo nucifera
Nn5g30892 Nelumbo nucifera
Nn6g31844 Nelumbo nucifera
Os03g0619400 Oryza sativa ssp. japonica
Os05g0556700 Oryza sativa ssp. japonica
Peaxi162Scf00892g00123 Petunia axillaris
PGR083G0799 Punica granatum
PGSC0003DMG400007622 Solanum tuberosum
PGSC0003DMG400012727 Solanum tuberosum
PGSC0003DMG400019637 Solanum tuberosum
Phvul.011G092200 Phaseolus vulgaris
Potri.001G341100 Populus trichocarpa
Potri.006G128600 Populus trichocarpa
Pp3c5_16830 Physcomitrium patens
Pp3c6_15940 Physcomitrium patens
PRCOL_00000789 Prasinoderma coloniale
Prupe.1G357200 Prunus persica
Psat3g130480 Pisum sativum
PSO541G0609 Papaver somniferum
PSO675G6493 Papaver somniferum
QL02p013553 Quercus lobata
RcHm_v2.0_Chr6g0303921 Rosa chinensis
Rhsim04G0232000 Rhododendron simsii
Rhsim06G0057200 Rhododendron simsii
RhsimUnG0194000 Rhododendron simsii
SalBow6G3216 Salvia bowleyana
Sc09g0003140 Simmondsia chinensis
Sed0016101 Sechium edule
Sed0026774 Sechium edule
SEGI_28270 Sequoiadendron giganteum
SGA_v2.0_scaffold25G11193 Striga asiatica
SGA_v2.0_scaffold275G46553 Striga asiatica
SMO116G0467 Selaginella moellendorffii
Solyc11g069000.2 Solanum lycopersicum
Sopen08g014310 Solanum pennellii
Sopen11g027710 Solanum pennellii
Sp6g23630 Schrenkiella parvula
TAR381G1660 Trochodendron aralioides
TAR625G1357 Trochodendron aralioides
THA.LOC104800468 Tarenaya hassleriana
THA.LOC104816947 Tarenaya hassleriana
THA.LOC104826462 Tarenaya hassleriana
Thecc.08G054800 Theobroma cacao
Thhalv10013239m.g Eutrema salsugineum
TPR.G31895 Trifolium pratense
TPR.G4726 Trifolium pratense
TWI36G1689 Tripterygium wilfordii
TWI56G0512 Tripterygium wilfordii
unitig_744.g24606 Utricularia gibba
vmacro19453 Vaccinium macrocarpon
VMungo1127G1082 Vigna mungo
Zm00001eb127430 Zea mays
Zm00001eb130780 Zea mays
Zm00001eb210250 Zea mays
Zm00001eb333890 Zea mays

User provided reference genes

Program Settings