Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p14610 Brassica napus
A03p54280 Brassica napus
A05p37260 Brassica napus
Aa31LG6G6610 Aethionema arabicum
Aa31sc172G10 Aethionema arabicum
Actinidia32452 Actinidia chinensis
Actinidia38845 Actinidia chinensis
AL3G23720 Arabidopsis lyrata
AL7G30050 Arabidopsis lyrata
Aqoxy6G01615 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4R894K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D9WPRA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z4U2NE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z77BB1 Arachis hypogaea
AT3G12090 Arabidopsis thaliana
AT4G23410 Arabidopsis thaliana
ATR0314G027 Amborella trichopoda
Atru.chr12.728 Acer truncatum
AUR62035546 Chenopodium quinoa
AUR62037538 Chenopodium quinoa
BcaB06g25546 Brassica carinata
BcaC05g29291 Brassica carinata
BcaC09g48212 Brassica carinata
BcaC09g51003 Brassica carinata
BcaNung00973 Brassica carinata
BcaNung00974 Brassica carinata
BcaNung01441 Brassica carinata
BcaNung06702 Brassica carinata
BolC1t01739H Brassica oleracea
BolC1t05265H Brassica oleracea
BolC5t34240H Brassica oleracea
BolC7t45767H Brassica oleracea
BraA01t01402Z Brassica rapa
BraA01t04138Z Brassica rapa
BraA03t14490Z Brassica rapa
BraA05t22522Z Brassica rapa
C01p18110 Brassica napus
C05p55730 Brassica napus
C07p52660 Brassica napus
CAN.G29.7 Capsicum annuum
CANSAT56G0810 Cannabis sativa
CARHR086650 Cardamine hirsuta
CARHR230750 Cardamine hirsuta
Carub.0003s1143 Capsella rubella
Carub.0007s1778 Capsella rubella
Ca_10578_v3 Cicer arietinum L.
Ca_27247_v3 Cicer arietinum L.
Cc02_g11500 Coffea canephora
CDE09G0623 Ceratophyllum demersum
Cfa001609 Carpinus fangiana
Ciclev10032346m.g Citrus clementina
CiPaw.01G274500 Carya illinoinensis
ClCG05G020900 Citrullus lanatus
ClCG09G020630 Citrullus lanatus
COL.COLO4_23709 Corchorus olitorius
Cpa.g.c28125.3 Carica papaya
CsaV3_5G025760 Cucumis sativus L.
CsaV3_5G036410 Cucumis sativus L.
CSS0003636 Camellia sinensis var. sinensis
CSS0006653 Camellia sinensis var. sinensis
CSS0049554 Camellia sinensis var. sinensis
DCAR_006454 Daucus carota
Dinv11790 Davidia involucrata
Dinv31335 Davidia involucrata
Duzib106G0406 Durio zibethinus
Duzib114G0396 Durio zibethinus
ECA238G1490 Erigeron canadensis
EL10Ac4g08866 Beta vulgaris
Eucgr.G02818 Eucalyptus grandis
Eucgr.J01104 Eucalyptus grandis
FAN01G1124 Fragaria x ananassa
FAN03G1466 Fragaria x ananassa
FAN06G4304 Fragaria x ananassa
FAN10G4123 Fragaria x ananassa
FvH4_7g19800 Fragaria vesca
FvH4_7g19830 Fragaria vesca
Glyma.02G063700 Glycine max
Glyma.10G212400 Glycine max
Glyma.16G145400 Glycine max
Glyma.20G178700 Glycine max
Gohir.A05G413200 Gossypium hirsutum
Gohir.D04G002900 Gossypium hirsutum
Gorai.012G004000 Gossypium raimondii
GSVIVG01016305001 Vitis vinifera
HanXRQChr08g0219641 Helianthus annuus
HanXRQChr11g0323231 Helianthus annuus
HanXRQChr14g0457231 Helianthus annuus
Haze_16913 Corylus avellana
Hma1.2p1_1203F.1_g266940 Hydrangea macrophylla
HPP92_006754 Vanilla planifolia
HPP92_012049 Vanilla planifolia
HPP92_025090 Vanilla planifolia
Hund06852 Selenicereus undatus
Lalb_Chr01g0010111 Lupinus albus
Lalb_Chr02g0141991 Lupinus albus
Lalb_Chr02g0142041 Lupinus albus
Lalb_Chr06g0162241 Lupinus albus
Lj1C918T7 Lonicera japonica
Lj2g0026181 Lotus japonicus
Lj5g0000955 Lotus japonicus
Lsat_1_v5_gn_2_113641 Lactuca sativa
Lsat_1_v5_gn_8_19961 Lactuca sativa
Manes.07G104000 Manihot esculenta
Manes.10G044500 Manihot esculenta
MBI19_g10816_MAGBIO Magnolia biondii
MD01G1110500 Malus domestica
MD07G1176400 Malus domestica
Medtr1g095530 Medicago truncatula
Medtr6g033335 Medicago truncatula
MELO3C002899.2 Cucumis melo
MELO3C012439.2 Cucumis melo
Migut.F01998 Erythranthe guttata
MSTRG.27462 Avicennia marina
MSTRG.9180 Avicennia marina
Nitab4.5_0000233g0100 Nicotiana tabacum
Nitab4.5_0001352g0030 Nicotiana tabacum
Nn2g10731 Nelumbo nucifera
Nn2g13043 Nelumbo nucifera
Oeu003127.2 Olea europaea
Oeu007398.1 Olea europaea
Oeu033852.1 Olea europaea
Os01g0977100 Oryza sativa ssp. japonica
Os05g0126100 Oryza sativa ssp. japonica
Peaxi162Scf00272g00049 Petunia axillaris
PGR044G1410 Punica granatum
PGR142G2778 Punica granatum
PGSC0003DMG400005358 Solanum tuberosum
Phvul.004G071900 Phaseolus vulgaris
Phvul.007G093400 Phaseolus vulgaris
Potri.008G041600 Populus trichocarpa
Potri.010G220300 Populus trichocarpa
Prupe.2G215300 Prunus persica
Psat1g100040 Pisum sativum
Psat6g185360 Pisum sativum
PSO063G6639 Papaver somniferum
PSO339G1668 Papaver somniferum
PSO339G2809 Papaver somniferum
PSO384G3839 Papaver somniferum
QL08p056411 Quercus lobata
QL08p056480 Quercus lobata
RcHm_v2.0_Chr1g0363771 Rosa chinensis
RcHm_v2.0_Chr1g0363801 Rosa chinensis
Rhsim03G0124400 Rhododendron simsii
Rhsim09G0153100 Rhododendron simsii
Sabra08G0028500 Salix brachista
Sabra10G0170100 Salix brachista
SalBow4G1544 Salvia bowleyana
Sc06g0001770 Simmondsia chinensis
Sed0006983 Sechium edule
Sed0025127 Sechium edule
SGA_v2.0_scaffold62G21417 Striga asiatica
Solyc04g049080.4 Solanum lycopersicum
Sopen04g018500 Solanum pennellii
Sp3g10320 Schrenkiella parvula
Sp7g21320 Schrenkiella parvula
TAR369G1061 Trochodendron aralioides
TAR636G2185 Trochodendron aralioides
TAR636G2739 Trochodendron aralioides
THA.LOC104813022 Tarenaya hassleriana
THA.LOC104814598 Tarenaya hassleriana
THA.LOC104819146 Tarenaya hassleriana
Thecc.10G070900 Theobroma cacao
Thhalv10021277m.g Eutrema salsugineum
Thhalv10025936m.g Eutrema salsugineum
TPR.G36651 Trifolium pratense
TPR.G3930 Trifolium pratense
TWI63G1689 Tripterygium wilfordii
unitig_46.g18432 Utricularia gibba
vmacro04880 Vaccinium macrocarpon
VMungo0464G0372 Vigna mungo
VMungo0720G2718 Vigna mungo
Zm00001eb265260 Zea mays
Zm00001eb295330 Zea mays
Zm00001eb295340 Zea mays
Zm00001eb355030 Zea mays
Zm00001eb362070 Zea mays

User provided reference genes

Program Settings