Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p10490 Brassica napus
A08p00830 Brassica napus
Aa31LG10G15430 Aethionema arabicum
Aa31LG1G18480 Aethionema arabicum
Aa31LG1G18490 Aethionema arabicum
Aa31LG1G18500 Aethionema arabicum
Aa31LG1G18510 Aethionema arabicum
Aa31LG2G10060 Aethionema arabicum
Aa31LG5G8520 Aethionema arabicum
Aa31LG9G17690 Aethionema arabicum
Actinidia22883 Actinidia chinensis
Actinidia32996 Actinidia chinensis
Ah.04g162800 Amaranthus hybridus
Ah.06g191370 Amaranthus hybridus
AL2G22840 Arabidopsis lyrata
AL3G42470 Arabidopsis lyrata
AL3G42480 Arabidopsis lyrata
AL5G44480 Arabidopsis lyrata
AL6G17260 Arabidopsis lyrata
AL7G45860 Arabidopsis lyrata
Aqoxy2G03712 Aquilegia oxysepala
Aqoxy3G04352 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea
AT1G65710 Arabidopsis thaliana
AT5G37010 Arabidopsis thaliana
ATR0124G054 Amborella trichopoda
Atru.chr1.2190 Acer truncatum
AUR62010625 Chenopodium quinoa
AUR62010626 Chenopodium quinoa
AUR62017269 Chenopodium quinoa
BcaB04g16989 Brassica carinata
BcaB05g23170 Brassica carinata
BcaB05g24123 Brassica carinata
BcaB06g27061 Brassica carinata
BcaB07g34060 Brassica carinata
BcaC01g01477 Brassica carinata
BcaC02g09547 Brassica carinata
BolC3t21550H Brassica oleracea
BolC4t25981H Brassica oleracea
BraA08t32141Z Brassica rapa
C03p92420 Brassica napus
C04p43990 Brassica napus
CAN.G304.8 Capsicum annuum
CAN.G809.93 Capsicum annuum
CANSAT78G1023 Cannabis sativa
CARHR057540 Cardamine hirsuta
CARHR216000 Cardamine hirsuta
Carub.0002s1153 Capsella rubella
Carub.0007s3228 Capsella rubella
Ca_05735_v3 Cicer arietinum L.
Ca_15099_v3 Cicer arietinum L.
Cc07_g12620 Coffea canephora
CDE04G0398 Ceratophyllum demersum
CDE07G0419 Ceratophyllum demersum
CDE08G0767 Ceratophyllum demersum
Ciclev10011149m.g Citrus clementina
CiPaw.03G010000 Carya illinoinensis
ClCG01G008410 Citrullus lanatus
COL.COLO4_13440 Corchorus olitorius
Cpa.g.sc108.20 Carica papaya
CsaV3_5G024360 Cucumis sativus L.
CSS0049356 Camellia sinensis var. sinensis
DCAR_014135 Daucus carota
Dinv19094 Davidia involucrata
Dinv28269 Davidia involucrata
Duzib138G1939 Durio zibethinus
ECA232G0457 Erigeron canadensis
ECA238G3337 Erigeron canadensis
EL10Ac4g08850 Beta vulgaris
Eucgr.J01649 Eucalyptus grandis
FAN04G0804 Fragaria x ananassa
FAN08G2134 Fragaria x ananassa
FAN18G0662 Fragaria x ananassa
FAN18G1276 Fragaria x ananassa
FvH4_5g39710 Fragaria vesca
Glyma.02G239000 Glycine max
Glyma.11G202800 Glycine max
Glyma.14G207900 Glycine max
Glyma.18G048000 Glycine max
Gohir.A11G170300 Gossypium hirsutum
Gohir.D11G177300 Gossypium hirsutum
Gorai.007G189400 Gossypium raimondii
GSVIVG01033197001 Vitis vinifera
HanXRQChr09g0258951 Helianthus annuus
HanXRQChr12g0365641 Helianthus annuus
HanXRQChr14g0443551 Helianthus annuus
Haze_14040 Corylus avellana
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla
HPP92_013140 Vanilla planifolia
Hund22224 Selenicereus undatus
Lalb_Chr10g0103871 Lupinus albus
Lalb_Chr10g0103891 Lupinus albus
Lalb_Chr18g0053951 Lupinus albus
Lj2A509T28 Lonicera japonica
Lj6g0018352 Lotus japonicus
LjContig00141g0025814 Lotus japonicus
Lsat_1_v5_gn_2_72041 Lactuca sativa
Lsat_1_v5_gn_8_114961 Lactuca sativa
Manes.01G125700 Manihot esculenta
Manes.02G083300 Manihot esculenta
MBI06_g17214_MAGBIO Magnolia biondii
MD12G1074700 Malus domestica
MD14G1072800 Malus domestica
Medtr3g063210 Medicago truncatula
Medtr5g076140 Medicago truncatula
MELO3C023611.2 Cucumis melo
MELO3C025107.2 Cucumis melo
Migut.K01203 Erythranthe guttata
MSTRG.15619 Avicennia marina
MSTRG.3665 Avicennia marina
Nitab4.5_0000483g0170 Nicotiana tabacum
Nitab4.5_0002297g0070 Nicotiana tabacum
Nitab4.5_0008083g0010 Nicotiana tabacum
Nitab4.5_0012787g0030 Nicotiana tabacum
Nn4g24993 Nelumbo nucifera
Nn4g24995 Nelumbo nucifera
Oeu012502.2 Olea europaea
Oeu012503.1 Olea europaea
Oeu030973.1 Olea europaea
Oeu041416.1 Olea europaea
Oeu060824.1 Olea europaea
Os02g0638200 Oryza sativa ssp. japonica
Os04g0528600 Oryza sativa ssp. japonica
Peaxi162Scf00344g00199 Petunia axillaris
Peaxi162Scf00559g00031 Petunia axillaris
Peaxi162Scf00784g00029 Petunia axillaris
PGR042G3398 Punica granatum
PGSC0003DMG400019727 Solanum tuberosum
PGSC0003DMG400021472 Solanum tuberosum
PGSC0003DMG402019715 Solanum tuberosum
Phvul.006G083400 Phaseolus vulgaris
Phvul.008G243000 Phaseolus vulgaris
Potri.012G145200 Populus trichocarpa
Potri.015G147900 Populus trichocarpa
Prupe.7G058700 Prunus persica
Prupe.7G058800 Prunus persica
Psat2g048640 Pisum sativum
Psat3g059240 Pisum sativum
Psat5g144840 Pisum sativum
Psat7g004680 Pisum sativum
PSO063G2224 Papaver somniferum
PSO782G2347 Papaver somniferum
QL02p055515 Quercus lobata
QL02p056567 Quercus lobata
RcHm_v2.0_Chr7g0242011 Rosa chinensis
Rhsim10G0186600 Rhododendron simsii
Sabra12G0109200 Salix brachista
Sabra15G0156700 Salix brachista
Sabra16G0322400 Salix brachista
Sabra16G0322500 Salix brachista
SalBow5G4136 Salvia bowleyana
Sc20g0000860 Simmondsia chinensis
Sed0021341 Sechium edule
SEGI_22138 Sequoiadendron giganteum
SGA_v2.0_scaffold199G41250 Striga asiatica
Solyc02g036460.3 Solanum lycopersicum
Solyc02g081440.4 Solanum lycopersicum
Sopen02g011820 Solanum pennellii
Sopen02g026080 Solanum pennellii
Sp5g20650 Schrenkiella parvula
Sp7g05490 Schrenkiella parvula
TAR629G1700 Trochodendron aralioides
TAR629G2443 Trochodendron aralioides
THA.LOC104805668 Tarenaya hassleriana
Thecc.04G056400 Theobroma cacao
Thhalv10018248m.g Eutrema salsugineum
Thhalv10018468m.g Eutrema salsugineum
TPR.G15394 Trifolium pratense
TPR.G37433 Trifolium pratense
TWI74G0163 Tripterygium wilfordii
TWI77G0024 Tripterygium wilfordii
unitig_0.g1678 Utricularia gibba
unitig_748.g7017 Utricularia gibba
unitig_748.g8624 Utricularia gibba
vmacro20445 Vaccinium macrocarpon
VMungo0540G0009 Vigna mungo
VMungo0647G0124 Vigna mungo
VMungo1215G2457 Vigna mungo
VMungo1383G0923 Vigna mungo
Zm00001eb075920 Zea mays
Zm00001eb185660 Zea mays
Zm00001eb427110 Zea mays

User provided reference genes

Program Settings