Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p30820 Brassica napus
A09p16610 Brassica napus
Aa31LG2G8930 Aethionema arabicum
Actinidia26919 Actinidia chinensis
Actinidia30520 Actinidia chinensis
AL2G14150 Arabidopsis lyrata
Aqoxy7G02443 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.E1NLAK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G6ALAZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KD19HR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L156KV Arachis hypogaea
AT1G61900 Arabidopsis thaliana
ATR0752G214 Amborella trichopoda
Atru.chr10.2212 Acer truncatum
Atru.chr6.3178 Acer truncatum
AUR62012699 Chenopodium quinoa
AUR62021959 Chenopodium quinoa
BcaB04g20382 Brassica carinata
BcaB07g31294 Brassica carinata
BcaC04g22361 Brassica carinata
BolC1t03866H Brassica oleracea
BolC9t54923H Brassica oleracea
BraA01t03210Z Brassica rapa
BraA09t37297Z Brassica rapa
C01p39150 Brassica napus
C09p20180 Brassica napus
CAN.G404.55 Capsicum annuum
CAN.G569.12 Capsicum annuum
CAN.G720.9 Capsicum annuum
CANSAT56G0962 Cannabis sativa
CANSAT64G1055 Cannabis sativa
CARHR050410 Cardamine hirsuta
Carub.0002s0314 Capsella rubella
Ca_00618_v3 Cicer arietinum L.
Cc09_g01760 Coffea canephora
CDE05G1911 Ceratophyllum demersum
Cfa014403 Carpinus fangiana
Cfa014404 Carpinus fangiana
Ciclev10015200m.g Citrus clementina
Ciclev10015544m.g Citrus clementina
CiPaw.03G160300 Carya illinoinensis
CiPaw.04G116400 Carya illinoinensis
CiPaw.09G090900 Carya illinoinensis
CiPaw.10G070400 Carya illinoinensis
ClCG03G004780 Citrullus lanatus
COL.COLO4_06330 Corchorus olitorius
COL.COLO4_31763 Corchorus olitorius
Cpa.g.sc152.5 Carica papaya
CsaV3_1G010820 Cucumis sativus L.
CSS0000716 Camellia sinensis var. sinensis
CSS0005663 Camellia sinensis var. sinensis
CSS0031894 Camellia sinensis var. sinensis
DCAR_004214 Daucus carota
DCAR_019276 Daucus carota
Dinv05433 Davidia involucrata
Dinv13886 Davidia involucrata
Dinv20046 Davidia involucrata
Duzib192G0723 Durio zibethinus
Duzib235G1244 Durio zibethinus
ECA234G4482 Erigeron canadensis
EL10Ac8g20045 Beta vulgaris
Eucgr.A01709 Eucalyptus grandis
Eucgr.D01317 Eucalyptus grandis
FAN02G0746 Fragaria x ananassa
FAN09G4809 Fragaria x ananassa
FAN10G3223 Fragaria x ananassa
FAN14G5274 Fragaria x ananassa
FAN21G2551 Fragaria x ananassa
FAN21G2930 Fragaria x ananassa
FvH4_3g02240 Fragaria vesca
FvH4_6g43210 Fragaria vesca
Glyma.06G305300 Glycine max
Glyma.12G099200 Glycine max
Glyma.13G205300 Glycine max
Glyma.15G107200 Glycine max
Gohir.A06G148100 Gossypium hirsutum
Gohir.A10G013100 Gossypium hirsutum
Gohir.D06G154000 Gossypium hirsutum
Gohir.D10G013000 Gossypium hirsutum
Gorai.010G180100 Gossypium raimondii
Gorai.011G014700 Gossypium raimondii
GSVIVG01012736001 Vitis vinifera
HanXRQChr03g0090851 Helianthus annuus
HanXRQChr04g0127601 Helianthus annuus
HanXRQChr06g0180881 Helianthus annuus
HanXRQChr06g0180891 Helianthus annuus
HanXRQChr12g0384551 Helianthus annuus
HanXRQChr16g0516161 Helianthus annuus
HanXRQChr17g0557431 Helianthus annuus
Haze_06792 Corylus avellana
Haze_12868 Corylus avellana
Hma1.2p1_0091F.1_g046390 Hydrangea macrophylla
Hma1.2p1_0328F.1_g126910 Hydrangea macrophylla
HPP92_000851 Vanilla planifolia
Hund23472 Selenicereus undatus
Lalb_Chr18g0056311 Lupinus albus
Lalb_Chr19g0135831 Lupinus albus
Lj1C764T13 Lonicera japonica
Lj2A269T54 Lonicera japonica
Lj3g0006704 Lotus japonicus
Lj6g0017819 Lotus japonicus
Lsat_1_v5_gn_4_60640 Lactuca sativa
Lsat_1_v5_gn_7_92161 Lactuca sativa
Manes.16G007800 Manihot esculenta
Manes.17G038605 Manihot esculenta
MBI02_g07155_MAGBIO Magnolia biondii
MBI18_g14749_MAGBIO Magnolia biondii
MD05G1344700 Malus domestica
MD05G1345000 Malus domestica
MD05G1345100 Malus domestica
MD09G1108600 Malus domestica
MD10G1320400 Malus domestica
Medtr2g022990 Medicago truncatula
Medtr4g048040 Medicago truncatula
MELO3C002461.2 Cucumis melo
Migut.M01313 Erythranthe guttata
MSTRG.15984 Avicennia marina
Nitab4.5_0002137g0110 Nicotiana tabacum
Nitab4.5_0004417g0040 Nicotiana tabacum
Nitab4.5_0008201g0030 Nicotiana tabacum
Nitab4.5_0008596g0030 Nicotiana tabacum
Nn1g03546 Nelumbo nucifera
Nn5g29369 Nelumbo nucifera
Oeu011090.1 Olea europaea
Oeu013640.1 Olea europaea
Oeu037362.1 Olea europaea
Oeu051212.1 Olea europaea
Os07g0102300 Oryza sativa ssp. japonica
Peaxi162Scf00007g00923 Petunia axillaris
Peaxi162Scf00262g00127 Petunia axillaris
PGR004G2000 Punica granatum
PGR042G1645 Punica granatum
PGSC0003DMG400028952 Solanum tuberosum
PGSC0003DMG401005053 Solanum tuberosum
PGSC0003DMG401016456 Solanum tuberosum
Phvul.006G150200 Phaseolus vulgaris
Phvul.011G104100 Phaseolus vulgaris
Potri.004G016000 Populus trichocarpa
Potri.011G003000 Populus trichocarpa
Pp3c19_7530 Physcomitrium patens
Prupe.3G217500 Prunus persica
Prupe.4G021700 Prunus persica
Psat1g181200 Pisum sativum
Psat7g199440 Pisum sativum
PSO210G7317 Papaver somniferum
PSO832G3148 Papaver somniferum
QL05p073396 Quercus lobata
QL06p012152 Quercus lobata
QL08p033134 Quercus lobata
RcHm_v2.0_Chr2g0159431 Rosa chinensis
RcHm_v2.0_Chr5g0003311 Rosa chinensis
Rhsim13G0154500 Rhododendron simsii
Sabra04G0008300 Salix brachista
Sabra11G0001100 Salix brachista
SalBow8G4589 Salvia bowleyana
Sc06g0009560 Simmondsia chinensis
Sc17g0007330 Simmondsia chinensis
Sed0003334 Sechium edule
Sed0021959 Sechium edule
SEGI_24144 Sequoiadendron giganteum
SGA_v2.0_scaffold7G03850 Striga asiatica
SHI02184 Sapria himalayana
Solyc02g080500.3 Solanum lycopersicum
Solyc03g031680.3 Solanum lycopersicum
Solyc07g052360.2 Solanum lycopersicum
Sopen02g025190 Solanum pennellii
Sopen03g005550 Solanum pennellii
Sopen07g025990 Solanum pennellii
Sp2g02640 Schrenkiella parvula
TAR624G0751 Trochodendron aralioides
TAR626G1789 Trochodendron aralioides
THA.LOC104818814 Tarenaya hassleriana
Thecc.06G219500 Theobroma cacao
Thhalv10023466m.g Eutrema salsugineum
TPR.G4632 Trifolium pratense
TPR.G9949 Trifolium pratense
TWI36G0494 Tripterygium wilfordii
TWI38G2310 Tripterygium wilfordii
TWI63G1240 Tripterygium wilfordii
TWI75G1513 Tripterygium wilfordii
unitig_37.g12151 Utricularia gibba
vmacro03688 Vaccinium macrocarpon
vmacro22902 Vaccinium macrocarpon
VMungo0540G0083 Vigna mungo
VMungo1127G0183 Vigna mungo
Zm00001eb298090 Zea mays

User provided reference genes

Program Settings