Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p24810 Brassica napus
Aa31LG1G24700 Aethionema arabicum
Aa31LG6G5840 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3525 Anthoceros agrestis
Actinidia07674 Actinidia chinensis
Actinidia39555 Actinidia chinensis
Ah.09g232910 Amaranthus hybridus
AL1G43660 Arabidopsis lyrata
AL4G41580 Arabidopsis lyrata
Aqoxy1G01824 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0JHG5Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QBP2NG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VAF4MI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WT2YK3 Arachis hypogaea
AT1G29820 Arabidopsis thaliana
AT1G29830 Arabidopsis thaliana
AT2G42950 Arabidopsis thaliana
ATR1131G058 Amborella trichopoda
Atru.chr10.1372 Acer truncatum
Atru.chr6.2080 Acer truncatum
AUR62027570 Chenopodium quinoa
AUR62035789 Chenopodium quinoa
BcaB03g12182 Brassica carinata
BcaB06g29273 Brassica carinata
BcaC01g00142 Brassica carinata
BcaC02g07214 Brassica carinata
BNapus_Darmor_BZH_scaffold_64p00180 Brassica napus
BolC3t19880H Brassica oleracea
BolC4t28499H Brassica oleracea
BraA04t18699Z Brassica rapa
BraA08t34436Z Brassica rapa
C03p76240 Brassica napus
C04p69990 Brassica napus
CAN.G2018.1 Capsicum annuum
CANSAT35G0642 Cannabis sativa
CARHR029610 Cardamine hirsuta
CARHR138010 Cardamine hirsuta
Carub.0001s2807 Capsella rubella
Carub.0004s2542 Capsella rubella
Ca_06279_v3 Cicer arietinum L.
Ca_11357_v3 Cicer arietinum L.
Ca_30614_v3 Cicer arietinum L.
Cc05_g09550 Coffea canephora
Cc09_g09610 Coffea canephora
CDE08G1393 Ceratophyllum demersum
Cfa000990 Carpinus fangiana
Ciclev10014753m.g Citrus clementina
Ciclev10031790m.g Citrus clementina
CiPaw.09G127300 Carya illinoinensis
CiPaw.09G127400 Carya illinoinensis
ClCG03G007130 Citrullus lanatus
COL.COLO4_07487 Corchorus olitorius
COL.COLO4_08451 Corchorus olitorius
Cpa.g.sc17.128 Carica papaya
Cpa.g.sc50.94 Carica papaya
CsaV3_1G032710 Cucumis sativus L.
DCAR_005073 Daucus carota
DCAR_013317 Daucus carota
Dinv30696 Davidia involucrata
Duzib192G0036 Durio zibethinus
ECA232G3556 Erigeron canadensis
ECA234G1186 Erigeron canadensis
EL10Ac8g19781 Beta vulgaris
Eucgr.A01981 Eucalyptus grandis
Eucgr.A01984 Eucalyptus grandis
Eucgr.A01987 Eucalyptus grandis
Eucgr.D00339 Eucalyptus grandis
FAN02G0419 Fragaria x ananassa
FAN09G2932 Fragaria x ananassa
FAN11G2053 Fragaria x ananassa
FAN14G5098 Fragaria x ananassa
FAN16G0009 Fragaria x ananassa
FAN19G1589 Fragaria x ananassa
FAN21G1255 Fragaria x ananassa
FAN25G2602 Fragaria x ananassa
FAN26G2057 Fragaria x ananassa
FvH4_1g24850 Fragaria vesca
FvH4_3g06290 Fragaria vesca
FvH4_6g38330 Fragaria vesca
Glyma.02G285600 Glycine max
Glyma.14G028650 Glycine max
Glyma.15G125900 Glycine max
Gohir.A06G198200 Gossypium hirsutum
Gohir.A09G007100 Gossypium hirsutum
Gohir.D06G205600 Gossypium hirsutum
Gohir.D09G006300 Gossypium hirsutum
Gorai.006G007900 Gossypium raimondii
Gorai.010G239900 Gossypium raimondii
GSVIVG01021390001 Vitis vinifera
HanXRQChr05g0147821 Helianthus annuus
HanXRQChr16g0525801 Helianthus annuus
Haze_05526 Corylus avellana
Haze_13511 Corylus avellana
HPP92_008023 Vanilla planifolia
HPP92_008031 Vanilla planifolia
Hund21490 Selenicereus undatus
Lalb_Chr10g0106641 Lupinus albus
Lalb_Chr18g0057721 Lupinus albus
Lj1A1183G65 Lonicera japonica
Lj1A614G6 Lonicera japonica
Lj2A310T45 Lonicera japonica
Lj6g0006873 Lotus japonicus
LjContig00049g0028197 Lotus japonicus
Lsat_1_v5_gn_0_8061 Lactuca sativa
Lsat_1_v5_gn_4_29721 Lactuca sativa
Manes.17G065600 Manihot esculenta
Mapoly0130s0010 Marchantia polymorpha
MBI07_g07829_MAGBIO Magnolia biondii
MBI07_g35048_MAGBIO Magnolia biondii
MD03G1022500 Malus domestica
MD05G1290900 Malus domestica
MD10G1266700 Malus domestica
MD16G1203400 Malus domestica
MD17G1138500 Malus domestica
Medtr2g028770 Medicago truncatula
Medtr5g091570 Medicago truncatula
MELO3C002711.2 Cucumis melo
Migut.H02104 Erythranthe guttata
Migut.M00950 Erythranthe guttata
MSTRG.7463 Avicennia marina
Nitab4.5_0000206g0100 Nicotiana tabacum
Nitab4.5_0001826g0010 Nicotiana tabacum
Nitab4.5_0002209g0030 Nicotiana tabacum
Nitab4.5_0003104g0070 Nicotiana tabacum
Nn4g26479 Nelumbo nucifera
Oeu001052.1 Olea europaea
Oeu020929.2 Olea europaea
Os01g0601000 Oryza sativa ssp. japonica
Os01g0664100 Oryza sativa ssp. japonica
Peaxi162Scf00035g02617 Petunia axillaris
Peaxi162Scf00121g00231 Petunia axillaris
Peaxi162Scf00121g02312 Petunia axillaris
PGR031G1555 Punica granatum
PGR042G1945 Punica granatum
PGSC0003DMG400003171 Solanum tuberosum
PGSC0003DMG400021242 Solanum tuberosum
Phvul.006G132300 Phaseolus vulgaris
Potri.001G353000 Populus trichocarpa
Pp3c15_4880 Physcomitrium patens
Pp3c9_12460 Physcomitrium patens
Pp3c9_16960 Physcomitrium patens
Prupe.3G173900 Prunus persica
Prupe.4G074700 Prunus persica
Prupe.4G074800 Prunus persica
Psat1g170120 Pisum sativum
Psat2g016080 Pisum sativum
PSO135G0210 Papaver somniferum
PSO541G3465 Papaver somniferum
QL05p060163 Quercus lobata
QL08p044424 Quercus lobata
RcHm_v2.0_Chr2g0151641 Rosa chinensis
RcHm_v2.0_Chr2g0151651 Rosa chinensis
RcHm_v2.0_Chr5g0013021 Rosa chinensis
Rhsim06G0115300 Rhododendron simsii
Rhsim12G0071900 Rhododendron simsii
Sabra16G0232300 Salix brachista
SalBow7G4851 Salvia bowleyana
Sc05g0006540 Simmondsia chinensis
Sed0005552 Sechium edule
SEGI_06697 Sequoiadendron giganteum
SEGI_30082 Sequoiadendron giganteum
SGA_v2.0_scaffold333G49014 Striga asiatica
SGA_v2.0_scaffold4G02117 Striga asiatica
SHI35740 Sapria himalayana
Solyc02g021480.4 Solanum lycopersicum
Solyc10g007740.3 Solanum lycopersicum
Sopen02g005990 Solanum pennellii
Sopen10g003650 Solanum pennellii
Sp1g25730 Schrenkiella parvula
Sp4g25080 Schrenkiella parvula
TAR386G0005 Trochodendron aralioides
TAR626G0692 Trochodendron aralioides
TAR627G0573 Trochodendron aralioides
THA.LOC104820634 Tarenaya hassleriana
Thecc.01G163000 Theobroma cacao
Thecc.06G156600 Theobroma cacao
Thhalv10007315m.g Eutrema salsugineum
Thhalv10016539m.g Eutrema salsugineum
TPR.G12521 Trifolium pratense
TPR.G17499 Trifolium pratense
TPR.G17505 Trifolium pratense
TPR.G31585 Trifolium pratense
TPR.G7093 Trifolium pratense
TWI09G1133 Tripterygium wilfordii
unitig_748.g7439 Utricularia gibba
vmacro12466 Vaccinium macrocarpon
VMungo0540G2227 Vigna mungo
Zm00001eb359660 Zea mays

User provided reference genes

Program Settings