Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p00360 Brassica napus
A03p04440 Brassica napus
A04p16740 Brassica napus
A09p57700 Brassica napus
Aa31LG3G16980 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2717 Anthoceros agrestis
Actinidia00260 Actinidia chinensis
Actinidia28060 Actinidia chinensis
Ah.01g009650 Amaranthus hybridus
AL1G57760 Arabidopsis lyrata
AL4G11710 Arabidopsis lyrata
AL6G20650 Arabidopsis lyrata
Aqoxy3G02117 Aquilegia oxysepala
Aqoxy6G00575 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.JC4ZCG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KP3Y1K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M024AA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q99U9Q Arachis hypogaea
AT2G22230 Arabidopsis thaliana
AT5G10160 Arabidopsis thaliana
ATR0564G495 Amborella trichopoda
Atru.chr4.151 Acer truncatum
Atru.chr4.164 Acer truncatum
Atru.chr6.1131 Acer truncatum
AUR62010125 Chenopodium quinoa
AUR62013121 Chenopodium quinoa
BcaB01g05546 Brassica carinata
BcaB08g35050 Brassica carinata
BcaC02g08725 Brassica carinata
BolC2t06394H Brassica oleracea
BolC3t13024H Brassica oleracea
BolC4t26719H Brassica oleracea
BraA02t05021Z Brassica rapa
BraA03t09789Z Brassica rapa
BraA04t17306Z Brassica rapa
BraA09t41163Z Brassica rapa
C02p04300 Brassica napus
C03p04930 Brassica napus
C04p51290 Brassica napus
C08p40900 Brassica napus
CAN.G523.83 Capsicum annuum
CANSAT01G2072 Cannabis sativa
CANSAT11G0561 Cannabis sativa
CARHR113420 Cardamine hirsuta
CARHR113430 Cardamine hirsuta
CARHR203130 Cardamine hirsuta
Carub.0004s0137 Capsella rubella
Carub.0006s0862 Capsella rubella
Ca_00128_v3 Cicer arietinum L.
Ca_18341_v3 Cicer arietinum L.
CBR_g26519 Chara braunii
Cc02_g21710 Coffea canephora
CDE05G1762 Ceratophyllum demersum
CDE05G2354 Ceratophyllum demersum
Cfa002693 Carpinus fangiana
Cfa005625 Carpinus fangiana
Ciclev10026811m.g Citrus clementina
Ciclev10029222m.g Citrus clementina
Ciclev10030121m.g Citrus clementina
CiPaw.03G139400 Carya illinoinensis
CiPaw.05G037800 Carya illinoinensis
ClCG07G009490 Citrullus lanatus
COL.COLO4_09922 Corchorus olitorius
COL.COLO4_09923 Corchorus olitorius
Cpa.g.sc20.223 Carica papaya
Cre03.g208050 Chlamydomonas reinhardtii
CsaV3_4G004790 Cucumis sativus L.
CSS0037466 Camellia sinensis var. sinensis
CSS0042502 Camellia sinensis var. sinensis
CSS0046980 Camellia sinensis var. sinensis
DCAR_021850 Daucus carota
Dinv09045 Davidia involucrata
Dinv24205 Davidia involucrata
Duzib187G1230 Durio zibethinus
Duzib264G1262 Durio zibethinus
ECA234G2237 Erigeron canadensis
EL10Ac9g21474 Beta vulgaris
Eucgr.I02676 Eucalyptus grandis
FAN04G0911 Fragaria x ananassa
FAN19G2648 Fragaria x ananassa
FAN23G1173 Fragaria x ananassa
FAN26G2200 Fragaria x ananassa
FvH4_1g21430 Fragaria vesca
Glyma.05G118800 Glycine max
Glyma.05G118900 Glycine max
Glyma.08G073900 Glycine max
Glyma.08G179900 Glycine max
Glyma.15G052500 Glycine max
Gohir.A02G132000 Gossypium hirsutum
Gohir.A10G085700 Gossypium hirsutum
Gohir.D03G043300 Gossypium hirsutum
Gohir.D10G102800 Gossypium hirsutum
Gorai.003G044400 Gossypium raimondii
Gorai.011G112700 Gossypium raimondii
GSVIVG01006367001 Vitis vinifera
GSVIVG01006370001 Vitis vinifera
GSVIVG01029788001 Vitis vinifera
HanXRQChr03g0066951 Helianthus annuus
HanXRQChr10g0295971 Helianthus annuus
HanXRQChr11g0337011 Helianthus annuus
Haze_10643 Corylus avellana
Haze_24967 Corylus avellana
Haze_24968 Corylus avellana
Haze_24971 Corylus avellana
Hma1.2p1_0522F.1_g171540 Hydrangea macrophylla
Hma1.2p1_1341F.1_g276850 Hydrangea macrophylla
HPP92_011382 Vanilla planifolia
Hund06384 Selenicereus undatus
Lalb_Chr20g0123071 Lupinus albus
Lj4g0024201 Lotus japonicus
Lj5C241T2 Lonicera japonica
Lsat_1_v5_gn_9_117420 Lactuca sativa
Manes.01G139400 Manihot esculenta
Mapoly0022s0038 Marchantia polymorpha
MBI05_g00407_MAGBIO Magnolia biondii
MBI06_g27496_MAGBIO Magnolia biondii
MCO11G889 Micromonas commoda
MD00G1064800 Malus domestica
MD08G1220800 Malus domestica
MD15G1411500 Malus domestica
Medtr2g008620 Medicago truncatula
Medtr4g094265 Medicago truncatula
MELO3C017583.2 Cucumis melo
Migut.B00624 Erythranthe guttata
MSTRG.27790 Avicennia marina
MSTRG.5264 Avicennia marina
Nitab4.5_0000078g0070 Nicotiana tabacum
Nitab4.5_0001254g0040 Nicotiana tabacum
Nitab4.5_0002865g0030 Nicotiana tabacum
Nitab4.5_0003434g0020 Nicotiana tabacum
Nn1g05283 Nelumbo nucifera
Nn5g29041 Nelumbo nucifera
Oeu007954.1 Olea europaea
Os05g0435700 Oryza sativa ssp. japonica
Os08g0225000 Oryza sativa ssp. japonica
Peaxi162Scf00001g00026 Petunia axillaris
Peaxi162Scf00003g03625 Petunia axillaris
PGR102G0128 Punica granatum
PGR142G1162 Punica granatum
PGSC0003DMG400012564 Solanum tuberosum
Phvul.002G207600 Phaseolus vulgaris
Phvul.006G207200 Phaseolus vulgaris
Potri.001G209900 Populus trichocarpa
Potri.003G020300 Populus trichocarpa
Pp3c14_8480 Physcomitrium patens
Pp3c23_11330 Physcomitrium patens
Pp3c24_9920 Physcomitrium patens
PRCOL_00002661 Prasinoderma coloniale
Prupe.1G557700 Prunus persica
Prupe.6G180800 Prunus persica
Psat7g097760 Pisum sativum
PSO063G7399 Papaver somniferum
PSO133G0027 Papaver somniferum
PSO719G0001 Papaver somniferum
PSO782G5312 Papaver somniferum
QL06p050185 Quercus lobata
QL11p019866 Quercus lobata
RcHm_v2.0_Chr2g0115241 Rosa chinensis
RcHm_v2.0_Chr7g0226301 Rosa chinensis
Rhsim11G0136000 Rhododendron simsii
Sabra01G0162100 Salix brachista
Sabra03G0011700 Salix brachista
SalBow6G6318 Salvia bowleyana
Sc14g0002680 Simmondsia chinensis
Sed0010363 Sechium edule
SEGI_14878 Sequoiadendron giganteum
SGA_v2.0_scaffold145G36039 Striga asiatica
SGA_v2.0_scaffold45G17309 Striga asiatica
SMO340G0249 Selaginella moellendorffii
Solyc01g105060.3 Solanum lycopersicum
Sopen01g047590 Solanum pennellii
Sp4g01270 Schrenkiella parvula
Sp6g33240 Schrenkiella parvula
TAR381G0876 Trochodendron aralioides
TAR625G0989 Trochodendron aralioides
THA.LOC104799058 Tarenaya hassleriana
THA.LOC104801700 Tarenaya hassleriana
THA.LOC104818493 Tarenaya hassleriana
THA.LOC104824866 Tarenaya hassleriana
Thecc.01G105400 Theobroma cacao
Thhalv10000316m.g Eutrema salsugineum
Thhalv10014496m.g Eutrema salsugineum
TPR.G10437 Trifolium pratense
TPR.G13597 Trifolium pratense
TWI14G0589 Tripterygium wilfordii
TWI14G0727 Tripterygium wilfordii
TWI23G0665 Tripterygium wilfordii
unitig_22.g6081 Utricularia gibba
vmacro01818 Vaccinium macrocarpon
VMungo0540G1300 Vigna mungo
Zm00001eb170970 Zea mays
Zm00001eb348600 Zea mays

User provided reference genes

Program Settings