Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p02120 Brassica napus
A03p06150 Brassica napus
Aa31LG5G16620 Aethionema arabicum
Aa31LG9G6280 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1680 Anthoceros agrestis
Actinidia12363 Actinidia chinensis
Actinidia14984 Actinidia chinensis
Actinidia19407 Actinidia chinensis
Actinidia21543 Actinidia chinensis
AL6G24320 Arabidopsis lyrata
Aqoxy1G00258 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5H33RN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8BL5SS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SDL2CG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZH6VX0 Arachis hypogaea
AT5G13710 Arabidopsis thaliana
ATR0332G035 Amborella trichopoda
ATR0332G047 Amborella trichopoda
ATR0332G077 Amborella trichopoda
Atru.chr1.1082 Acer truncatum
Atru.chr11.2584 Acer truncatum
AUR62009400 Chenopodium quinoa
AUR62023083 Chenopodium quinoa
BcaB01g05340 Brassica carinata
BcaC04g24264 Brassica carinata
BcaNung04191 Brassica carinata
BolC2t06580H Brassica oleracea
BolC3t13215H Brassica oleracea
BraA02t05184Z Brassica rapa
BraA03t09947Z Brassica rapa
C02p06370 Brassica napus
C03p07160 Brassica napus
CAN.G128.10 Capsicum annuum
CAN.G219.54 Capsicum annuum
CANSAT80G0784 Cannabis sativa
CARHR199730 Cardamine hirsuta
Carub.0006s1189 Capsella rubella
Ca_14185_v3 Cicer arietinum L.
Ca_14485_v3 Cicer arietinum L.
CBR_g10856 Chara braunii
Cc02_g28350 Coffea canephora
CDE05G0501 Ceratophyllum demersum
Ciclev10031748m.g Citrus clementina
CiPaw.13G007200 Carya illinoinensis
CiPaw.14G001900 Carya illinoinensis
ClCG10G012230 Citrullus lanatus
ClCG10G012240 Citrullus lanatus
COL.COLO4_04874 Corchorus olitorius
COL.COLO4_28253 Corchorus olitorius
COL.COLO4_28257 Corchorus olitorius
Cpa.g.sc125.30 Carica papaya
CsaV3_3G032010 Cucumis sativus L.
CsaV3_3G032020 Cucumis sativus L.
CSS0001823 Camellia sinensis var. sinensis
CSS0002789 Camellia sinensis var. sinensis
DCAR_022380 Daucus carota
Dinv09326 Davidia involucrata
Duzib133G1041 Durio zibethinus
Duzib138G0178 Durio zibethinus
ECA234G3998 Erigeron canadensis
EL10Ac2g04347 Beta vulgaris
Eucgr.G03316 Eucalyptus grandis
Eucgr.G03330 Eucalyptus grandis
Eucgr.G03363 Eucalyptus grandis
Eucgr.G03364 Eucalyptus grandis
FAN01G2128 Fragaria x ananassa
FAN03G0911 Fragaria x ananassa
FAN06G1492 Fragaria x ananassa
FAN10G1771 Fragaria x ananassa
FvH4_7g01390 Fragaria vesca
Glyma.10G090500 Glycine max
Glyma.12G009200 Glycine max
Glyma.12G009300 Glycine max
Glyma.15G276300 Glycine max
Gohir.A08G054900 Gossypium hirsutum
Gohir.D08G064400 Gossypium hirsutum
Gorai.004G066700 Gossypium raimondii
GSVIVG01032155001 Vitis vinifera
GSVIVG01033285001 Vitis vinifera
HanXRQChr11g0343211 Helianthus annuus
HanXRQChr16g0524821 Helianthus annuus
HanXRQChr17g0563031 Helianthus annuus
Haze_03160 Corylus avellana
Haze_03171 Corylus avellana
Hma1.2p1_1328F.1_g275930 Hydrangea macrophylla
Hma1.2p1_1328F.1_g275940 Hydrangea macrophylla
HPP92_023572 Vanilla planifolia
Hund08393 Selenicereus undatus
Lalb_Chr20g0107911 Lupinus albus
Lalb_Chr25g0282831 Lupinus albus
Lj3g0001696 Lotus japonicus
Lj3g0004407 Lotus japonicus
Lj3g0026980 Lotus japonicus
Lj9C638G10 Lonicera japonica
Lsat_1_v5_gn_1_105621 Lactuca sativa
Lsat_1_v5_gn_4_31180 Lactuca sativa
Manes.07G007800 Manihot esculenta
Manes.08G051000 Manihot esculenta
Manes.10G139400 Manihot esculenta
Mapoly0022s0086 Marchantia polymorpha
MBI02_g23137_MAGBIO Magnolia biondii
MBI04_g17677_MAGBIO Magnolia biondii
MCO11G703 Micromonas commoda
MD02G1307400 Malus domestica
MD07G1018200 Malus domestica
Medtr3g032530 Medicago truncatula
MELO3C023989.2 Cucumis melo
MELO3C023990.2 Cucumis melo
Migut.B01280 Erythranthe guttata
MSTRG.20568 Avicennia marina
Nitab4.5_0000707g0230 Nicotiana tabacum
Nitab4.5_0001509g0020 Nicotiana tabacum
Nitab4.5_0002645g0030 Nicotiana tabacum
Nitab4.5_0004587g0050 Nicotiana tabacum
Nitab4.5_0006340g0030 Nicotiana tabacum
Nn2g15264 Nelumbo nucifera
Nn7g36263 Nelumbo nucifera
Oeu036568.1 Olea europaea
Oeu049488.1 Olea europaea
Oeu049489.1 Olea europaea
Os03g0807600 Oryza sativa ssp. japonica
Os07g0206700 Oryza sativa ssp. japonica
Os11g0296900 Oryza sativa ssp. japonica
Peaxi162Scf00019g00016 Petunia axillaris
Peaxi162Scf00354g00224 Petunia axillaris
PGR031G0628 Punica granatum
PGSC0003DMG400006855 Solanum tuberosum
Phvul.005G023700 Phaseolus vulgaris
Phvul.011G011800 Phaseolus vulgaris
Phvul.011G011900 Phaseolus vulgaris
Potri.001G263700 Populus trichocarpa
Potri.009G058600 Populus trichocarpa
Potri.016G056000 Populus trichocarpa
Pp3c14_10470 Physcomitrium patens
PRCOL_00005003 Prasinoderma coloniale
Prupe.2G019200 Prunus persica
Psat5g210200 Pisum sativum
PSO210G3275 Papaver somniferum
PSO339G0058 Papaver somniferum
PSO384G2229 Papaver somniferum
QL04p008841 Quercus lobata
QL07p000219 Quercus lobata
QL11p053824 Quercus lobata
RcHm_v2.0_Chr1g0317111 Rosa chinensis
RcHm_v2.0_Chr3g0482141 Rosa chinensis
Rhsim03G0258600 Rhododendron simsii
Rhsim05G0184300 Rhododendron simsii
Rhsim07G0057300 Rhododendron simsii
Rhsim07G0057400 Rhododendron simsii
Rhsim07G0057500 Rhododendron simsii
RhsimUnG0121400 Rhododendron simsii
RhsimUnG0121500 Rhododendron simsii
RhsimUnG0121700 Rhododendron simsii
RhsimUnG0121800 Rhododendron simsii
Sabra09G0043000 Salix brachista
Sabra16G0161900 Salix brachista
Sc10g0000200 Simmondsia chinensis
Sed0009367 Sechium edule
Sed0009889 Sechium edule
Sed0019833 Sechium edule
SEGI_06554 Sequoiadendron giganteum
SEGI_07428 Sequoiadendron giganteum
SEGI_27559 Sequoiadendron giganteum
SGA_v2.0_scaffold119G32749 Striga asiatica
SGA_v2.0_scaffold4G02505 Striga asiatica
SMO119G0140 Selaginella moellendorffii
Solyc01g087560.3 Solanum lycopersicum
Solyc10g080150.2 Solanum lycopersicum
Sopen01g034530 Solanum pennellii
Sopen10g030760 Solanum pennellii
Sp6g30310 Schrenkiella parvula
TAR369G0519 Trochodendron aralioides
TAR623G1785 Trochodendron aralioides
TAR633G1865 Trochodendron aralioides
THA.LOC104809850 Tarenaya hassleriana
THA.LOC104819086 Tarenaya hassleriana
THA.LOC104819087 Tarenaya hassleriana
Thecc.01G407900 Theobroma cacao
Thecc.01G408000 Theobroma cacao
Thecc.01G408100 Theobroma cacao
Thecc.05G156300 Theobroma cacao
Thhalv10014014m.g Eutrema salsugineum
TPR.G40018 Trifolium pratense
TWI09G1006 Tripterygium wilfordii
TWI53G1786 Tripterygium wilfordii
vmacro13385 Vaccinium macrocarpon
vmacro13686 Vaccinium macrocarpon
vmacro20091 Vaccinium macrocarpon
VMungo1080G0569 Vigna mungo
VMungo1127G0051 Vigna mungo
Zm00001eb212480 Zea mays
Zm00001eb212500 Zea mays
Zm00001eb303010 Zea mays
Zm00001eb372580 Zea mays

User provided reference genes

Program Settings