Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p01880 Brassica napus
A03p36660 Brassica napus
A10p31330 Brassica napus
Aa31LG11G5860 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2861 Anthoceros agrestis
Actinidia31111 Actinidia chinensis
Actinidia34062 Actinidia chinensis
Actinidia34733 Actinidia chinensis
Ah.04g162540 Amaranthus hybridus
AL3G22110 Arabidopsis lyrata
AL6G14520 Arabidopsis lyrata
Aqoxy1G00661 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3L4KIC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V7K45W Arachis hypogaea
AT3G10640 Arabidopsis thaliana
AT5G04850 Arabidopsis thaliana
ATR0037G030 Amborella trichopoda
ATR0772G188 Amborella trichopoda
Atru.chr12.1074 Acer truncatum
AUR62034167 Chenopodium quinoa
AUR62034489 Chenopodium quinoa
BcaB01g05917 Brassica carinata
BcaC01g04169 Brassica carinata
BcaC06g32192 Brassica carinata
BcaNung05152 Brassica carinata
BolC3t12776H Brassica oleracea
BolC3t16700H Brassica oleracea
BolC9t59944H Brassica oleracea
BraA03t09558Z Brassica rapa
BraA03t12830Z Brassica rapa
C03p02250 Brassica napus
C03p44300 Brassica napus
C09p71970 Brassica napus
CAN.G143.38 Capsicum annuum
CAN.G1433.3 Capsicum annuum
CANSAT56G0108 Cannabis sativa
CARHR085220 Cardamine hirsuta
CARHR208430 Cardamine hirsuta
Carub.0003s0987 Capsella rubella
Carub.0006s0376 Capsella rubella
Ca_10428_v3 Cicer arietinum L.
CBR_g38017 Chara braunii
Cc02_g09370 Coffea canephora
CDE06G1856 Ceratophyllum demersum
CDE08G0531 Ceratophyllum demersum
Cfa010523 Carpinus fangiana
Cfa027048 Carpinus fangiana
Ciclev10016516m.g Citrus clementina
CiPaw.13G043700 Carya illinoinensis
CiPaw.14G034900 Carya illinoinensis
ClCG05G021950 Citrullus lanatus
COL.COLO4_07818 Corchorus olitorius
Cpa.g.sc694.2 Carica papaya
Cre13.g577950 Chlamydomonas reinhardtii
CSS0006463 Camellia sinensis var. sinensis
CSS0024502 Camellia sinensis var. sinensis
CSS0032406 Camellia sinensis var. sinensis
CSS0036043 Camellia sinensis var. sinensis
CSS0049378 Camellia sinensis var. sinensis
DCAR_011995 Daucus carota
Dinv08416 Davidia involucrata
Dinv08584 Davidia involucrata
Duzib106G1693 Durio zibethinus
Duzib114G0839 Durio zibethinus
ECA232G4887 Erigeron canadensis
ECA238G1602 Erigeron canadensis
EL10Ac4g08721 Beta vulgaris
Eucgr.G02678 Eucalyptus grandis
Eucgr.J00289 Eucalyptus grandis
FAN01G0006 Fragaria x ananassa
FAN06G0541 Fragaria x ananassa
FAN07G0736 Fragaria x ananassa
FAN10G0605 Fragaria x ananassa
FAN10G3327 Fragaria x ananassa
FvH4_7g05380 Fragaria vesca
Glyma.10G195600 Glycine max
Gohir.A05G287100 Gossypium hirsutum
Gohir.A10G196700 Gossypium hirsutum
Gohir.D05G288200 Gossypium hirsutum
Gohir.D10G203800 Gossypium hirsutum
Gorai.009G303200 Gossypium raimondii
Gorai.011G228600 Gossypium raimondii
GSVIVG01033955001 Vitis vinifera
GSVIVG01034624001 Vitis vinifera
GSVIVG01034626001 Vitis vinifera
HanXRQChr02g0053561 Helianthus annuus
HanXRQChr05g0146171 Helianthus annuus
HanXRQChr05g0162021 Helianthus annuus
Haze_03463 Corylus avellana
Haze_27511 Corylus avellana
Hma1.2p1_0926F.1_g237540 Hydrangea macrophylla
HPP92_020108 Vanilla planifolia
Hund06807 Selenicereus undatus
Hund22266 Selenicereus undatus
Lalb_Chr02g0150941 Lupinus albus
Lalb_Chr06g0169871 Lupinus albus
Lalb_Chr21g0312801 Lupinus albus
Lalb_Chr21g0312811 Lupinus albus
Lj2A35T41 Lonicera japonica
Lj3C923T8 Lonicera japonica
Lj5g0005985 Lotus japonicus
Lsat_1_v5_gn_0_21121 Lactuca sativa
Lsat_1_v5_gn_0_22560 Lactuca sativa
Lsat_1_v5_gn_0_39180 Lactuca sativa
Lsat_1_v5_gn_0_42020 Lactuca sativa
Lsat_1_v5_gn_1_80080 Lactuca sativa
Lsat_1_v5_gn_2_105880 Lactuca sativa
Lsat_1_v5_gn_3_109540 Lactuca sativa
Lsat_1_v5_gn_5_70341 Lactuca sativa
Lsat_1_v5_gn_6_1380 Lactuca sativa
Lsat_1_v5_gn_6_22060 Lactuca sativa
Manes.10G060100 Manihot esculenta
Mapoly0113s0057 Marchantia polymorpha
MBI18_g25924_MAGBIO Magnolia biondii
MBI19_g27265_MAGBIO Magnolia biondii
MBI19_g44429_MAGBIO Magnolia biondii
MBI19_g44564_MAGBIO Magnolia biondii
MCO07G102 Micromonas commoda
MD08G1216900 Malus domestica
MD15G1404000 Malus domestica
Medtr1g090490 Medicago truncatula
MELO3C004965.2 Cucumis melo
MELO3C012333.2 Cucumis melo
Migut.F00845 Erythranthe guttata
Migut.F01582 Erythranthe guttata
MSTRG.9034 Avicennia marina
Nitab4.5_0000687g0220 Nicotiana tabacum
Nitab4.5_0001781g0200 Nicotiana tabacum
Nitab4.5_0009933g0030 Nicotiana tabacum
Nitab4.5_0011469g0020 Nicotiana tabacum
Nn2g14302 Nelumbo nucifera
Nn6g34695 Nelumbo nucifera
Nn8g39931 Nelumbo nucifera
Oeu009249.1 Olea europaea
Oeu033275.1 Olea europaea
Os01g0103000 Oryza sativa ssp. japonica
Os05g0102900 Oryza sativa ssp. japonica
Peaxi162Scf00120g01529 Petunia axillaris
Peaxi162Scf00519g00041 Petunia axillaris
PGR044G1056 Punica granatum
PGR142G1001 Punica granatum
PGR142G3478 Punica granatum
PGSC0003DMG400023399 Solanum tuberosum
PGSC0003DMG402001984 Solanum tuberosum
Phvul.007G137700 Phaseolus vulgaris
Potri.008G018300 Populus trichocarpa
Potri.010G242700 Populus trichocarpa
Pp3c16_16920 Physcomitrium patens
Pp3c27_2180 Physcomitrium patens
Pp3c27_2240 Physcomitrium patens
PRCOL_00000670 Prasinoderma coloniale
Prupe.1G550400 Prunus persica
Psat6g171920 Pisum sativum
PSO339G4912 Papaver somniferum
PSO384G0200 Papaver somniferum
QL04p047928 Quercus lobata
QL04p047935 Quercus lobata
RcHm_v2.0_Chr1g0331931 Rosa chinensis
Rhsim03G0096100 Rhododendron simsii
Rhsim09G0140900 Rhododendron simsii
Sabra08G0011900 Salix brachista
Sabra10G0189700 Salix brachista
SalBow3G3414 Salvia bowleyana
SalBow6G4129 Salvia bowleyana
Sc09g0005090 Simmondsia chinensis
Sed0007836 Sechium edule
Sed0009816 Sechium edule
SEGI_00437 Sequoiadendron giganteum
SEGI_12957 Sequoiadendron giganteum
SEGI_13785 Sequoiadendron giganteum
SEGI_31513 Sequoiadendron giganteum
SGA_v2.0_scaffold278G46757 Striga asiatica
SGA_v2.0_scaffold62G21312 Striga asiatica
SMO118G0011 Selaginella moellendorffii
Solyc05g055170.3 Solanum lycopersicum
Solyc11g006500.2 Solanum lycopersicum
Sopen05g033590 Solanum pennellii
Sopen11g002390 Solanum pennellii
Sp3g08950 Schrenkiella parvula
Sp6g37980 Schrenkiella parvula
TAR369G0320 Trochodendron aralioides
TAR623G0671 Trochodendron aralioides
THA.LOC104816475 Tarenaya hassleriana
Thecc.10G117200 Theobroma cacao
Thhalv10014559m.g Eutrema salsugineum
Thhalv10021438m.g Eutrema salsugineum
TPR.G37809 Trifolium pratense
TWI38G0789 Tripterygium wilfordii
TWI63G0716 Tripterygium wilfordii
unitig_748.g8765 Utricularia gibba
vmacro07271 Vaccinium macrocarpon
vmacro10323 Vaccinium macrocarpon
VMungo0720G1868 Vigna mungo
Zm00001eb126990 Zea mays
Zm00001eb267590 Zea mays

User provided reference genes

Program Settings