Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p09060 Brassica napus
A09p15750 Brassica napus
Aa31LG2G500 Aethionema arabicum
Actinidia14503 Actinidia chinensis
Ah.02g116390 Amaranthus hybridus
Ah.12g057790 Amaranthus hybridus
AL2G12620 Arabidopsis lyrata
Aqoxy7G00486 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3211GC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5N4UPE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.INAW09 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RB932S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RUK088 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SE54WH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YQQ37R Arachis hypogaea
AT1G63000 Arabidopsis thaliana
ATR0757G144 Amborella trichopoda
Atru.chr9.1514 Acer truncatum
AUR62010578 Chenopodium quinoa
AUR62017312 Chenopodium quinoa
BcaB07g31375 Brassica carinata
BcaC01g01395 Brassica carinata
BcaC04g22462 Brassica carinata
BcaC05g25129 Brassica carinata
BcaC05g25131 Brassica carinata
BcaC05g25173 Brassica carinata
BcaC05g25174 Brassica carinata
BcaC05g25176 Brassica carinata
BolC3t21473H Brassica oleracea
BolC5t29808H Brassica oleracea
BolC9t54807H Brassica oleracea
BraA06t24094Z Brassica rapa
BraA09t37218Z Brassica rapa
C03p91560 Brassica napus
C05p10660 Brassica napus
C09p19030 Brassica napus
CAN.G981.53 Capsicum annuum
CANSAT21G2036 Cannabis sativa
CARHR048640 Cardamine hirsuta
Carub.0002s0200 Capsella rubella
Ca_20239_v3 Cicer arietinum L.
Ca_29908_v3 Cicer arietinum L.
CBR_g35037 Chara braunii
Cc00_g33830 Coffea canephora
Cc08_g13830 Coffea canephora
Cc11_g05020 Coffea canephora
CDE02G2791 Ceratophyllum demersum
CDE11G1211 Ceratophyllum demersum
Cfa012087 Carpinus fangiana
Ciclev10021340m.g Citrus clementina
CiPaw.11G142200 Carya illinoinensis
CiPaw.12G099800 Carya illinoinensis
CiPaw.12G100000 Carya illinoinensis
CiPaw.12G111000 Carya illinoinensis
ClCG01G003220 Citrullus lanatus
COL.COLO4_00384 Corchorus olitorius
COL.COLO4_00385 Corchorus olitorius
COL.COLO4_07466 Corchorus olitorius
COL.COLO4_17154 Corchorus olitorius
COL.COLO4_23786 Corchorus olitorius
COL.COLO4_23787 Corchorus olitorius
COL.COLO4_23788 Corchorus olitorius
COL.COLO4_23789 Corchorus olitorius
Cpa.g.c43894 Carica papaya
Cpa.g.sc23.32 Carica papaya
Cpa.g.sc29.25 Carica papaya
Cre09.g387171 Chlamydomonas reinhardtii
CsaV3_5G003330 Cucumis sativus L.
CSS0002169 Camellia sinensis var. sinensis
CSS0005524 Camellia sinensis var. sinensis
CSS0048055 Camellia sinensis var. sinensis
DCAR_000899 Daucus carota
DCAR_006768 Daucus carota
DCAR_021043 Daucus carota
DCAR_021044 Daucus carota
Dinv37701 Davidia involucrata
Dinv39026 Davidia involucrata
Duzib068G1224 Durio zibethinus
Duzib084G1126 Durio zibethinus
Duzib205G1959 Durio zibethinus
ECA240G0781 Erigeron canadensis
EL10Ac5g12714 Beta vulgaris
Eucgr.D01934 Eucalyptus grandis
FAN04G1125 Fragaria x ananassa
FAN08G0711 Fragaria x ananassa
FAN13G0204 Fragaria x ananassa
FAN18G2591 Fragaria x ananassa
FAN18G2701 Fragaria x ananassa
FvH4_5g01300 Fragaria vesca
FvH4_6g38001 Fragaria vesca
Glyma.01G215400 Glycine max
Glyma.05G050500 Glycine max
Glyma.05G061100 Glycine max
Glyma.08G309832 Glycine max
Glyma.17G132500 Glycine max
Gohir.A03G014328 Gossypium hirsutum
Gohir.D03G155500 Gossypium hirsutum
Gorai.003G163300 Gossypium raimondii
GSVIVG01014091001 Vitis vinifera
GSVIVG01019878001 Vitis vinifera
GSVIVG01033176001 Vitis vinifera
HanXRQChr02g0048671 Helianthus annuus
HanXRQChr03g0085861 Helianthus annuus
HanXRQChr13g0416711 Helianthus annuus
Haze_08971 Corylus avellana
Hma1.2p1_0138F.1_g062690 Hydrangea macrophylla
Hma1.2p1_0371F.1_g138240 Hydrangea macrophylla
HPP92_007247 Vanilla planifolia
HPP92_024055 Vanilla planifolia
Hund11533 Selenicereus undatus
Lalb_Chr09g0324721 Lupinus albus
Lj2A198T53 Lonicera japonica
Lj2C200T10 Lonicera japonica
Lj2g0000633 Lotus japonicus
Lj4g0020413 Lotus japonicus
Lj8A241T18 Lonicera japonica
Lsat_1_v5_gn_6_12820 Lactuca sativa
Lsat_1_v5_gn_6_87881 Lactuca sativa
Manes.01G069300 Manihot esculenta
Manes.02G030700 Manihot esculenta
Mapoly0005s0120 Marchantia polymorpha
MBI12_g29939_MAGBIO Magnolia biondii
MBI12_g36684_MAGBIO Magnolia biondii
MBI12_g36685_MAGBIO Magnolia biondii
MBI12_g42333_MAGBIO Magnolia biondii
MD03G1138100 Malus domestica
MD04G1069500 Malus domestica
MD06G1070600 Malus domestica
Medtr4g102550 Medicago truncatula
MELO3C005621.2 Cucumis melo
Migut.E01151 Erythranthe guttata
Migut.E01153 Erythranthe guttata
MSTRG.13812 Avicennia marina
MSTRG.1903 Avicennia marina
Nitab4.5_0001714g0120 Nicotiana tabacum
Nitab4.5_0005048g0080 Nicotiana tabacum
Nitab4.5_0013045g0010 Nicotiana tabacum
Nn1g01305 Nelumbo nucifera
Nn2g12475 Nelumbo nucifera
Nn5g27429 Nelumbo nucifera
Nn6g34300 Nelumbo nucifera
Oeu012392.1 Olea europaea
Os02g0678400 Oryza sativa ssp. japonica
Peaxi162Scf00620g00712 Petunia axillaris
PGR031G0570 Punica granatum
PGSC0003DMG402022737 Solanum tuberosum
Phvul.002G153500 Phaseolus vulgaris
Phvul.003G213400 Phaseolus vulgaris
Potri.001G112000 Populus trichocarpa
Potri.003G120000 Populus trichocarpa
Pp3c12_7560 Physcomitrium patens
Pp3c6_15300 Physcomitrium patens
Pp3c6_15310 Physcomitrium patens
Pp3c8_13780 Physcomitrium patens
Prupe.5G088400 Prunus persica
Psat4g066400 Pisum sativum
PSO063G2839 Papaver somniferum
PSO170G6493 Papaver somniferum
PSO478G4525 Papaver somniferum
PSO782G5705 Papaver somniferum
QL12p016675 Quercus lobata
RcHm_v2.0_Chr7g0199641 Rosa chinensis
Rhsim07G0096000 Rhododendron simsii
Sabra01G0085500 Salix brachista
Sabra03G0084100 Salix brachista
SalBow6G5873 Salvia bowleyana
Sc01g0008840 Simmondsia chinensis
Sc16g0005510 Simmondsia chinensis
Sed0005146 Sechium edule
Sed0027817 Sechium edule
SEGI_17745 Sequoiadendron giganteum
SGA_v2.0_scaffold146G36208 Striga asiatica
SGA_v2.0_scaffold196G40898 Striga asiatica
SGA_v2.0_scaffold286G47119 Striga asiatica
SMO351G0430 Selaginella moellendorffii
Solyc08g080140.4 Solanum lycopersicum
Sopen08g028500 Solanum pennellii
Sp1g11160 Schrenkiella parvula
Sp2g01580 Schrenkiella parvula
TAR374G1561 Trochodendron aralioides
TAR375G0619 Trochodendron aralioides
TAR629G2047 Trochodendron aralioides
THA.LOC104809430 Tarenaya hassleriana
THA.LOC104823569 Tarenaya hassleriana
Thecc.03G268900 Theobroma cacao
Thecc.03G269000 Theobroma cacao
Thhalv10023613m.g Eutrema salsugineum
TPR.G10970 Trifolium pratense
TPR.G37626 Trifolium pratense
TWI15G1118 Tripterygium wilfordii
TWI81G0066 Tripterygium wilfordii
unitig_744.g24327 Utricularia gibba
vmacro14010 Vaccinium macrocarpon
VMungo1215G1465 Vigna mungo
Zm00001eb155820 Zea mays
Zm00001eb250610 Zea mays

User provided reference genes

Program Settings