Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p20470 Brassica napus
A03p19670 Brassica napus
Aa31LG2G12940 Aethionema arabicum
Aa31LG9G12100 Aethionema arabicum
Actinidia14405 Actinidia chinensis
Ah.07g198830 Amaranthus hybridus
Ah.12g054350 Amaranthus hybridus
AL4G31770 Arabidopsis lyrata
AL575U10010 Arabidopsis lyrata
AL7G37930 Arabidopsis lyrata
Aqoxy3G02817 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.I9A8PV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MWEA9C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QXG3RX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZPM9RR Arachis hypogaea
AT2G35690 Arabidopsis thaliana
AT4G16760 Arabidopsis thaliana
ATR0057G009 Amborella trichopoda
Atru.chr9.1272 Acer truncatum
AUR62007112 Chenopodium quinoa
AUR62019981 Chenopodium quinoa
BcaB01g03886 Brassica carinata
BcaC01g05713 Brassica carinata
BcaC09g50411 Brassica carinata
BcaNung00152 Brassica carinata
BolC1t02524H Brassica oleracea
BolC3t14694H Brassica oleracea
BolC6t35390H Brassica oleracea
BraA01t01975Z Brassica rapa
BraA03t11221Z Brassica rapa
C01p25740 Brassica napus
C03p22930 Brassica napus
CAN.G1178.15 Capsicum annuum
CANSAT21G1427 Cannabis sativa
CARHR129930 Cardamine hirsuta
CARHR223330 Cardamine hirsuta
Carub.0004s1742 Capsella rubella
Carub.0007s2462 Capsella rubella
Ca_21988_v3 Cicer arietinum L.
Ca_21989_v3 Cicer arietinum L.
Ca_24593_v3 Cicer arietinum L.
Ca_30457_v3 Cicer arietinum L.
CBR_g30062 Chara braunii
Cc08_g12140 Coffea canephora
CDE02G3830 Ceratophyllum demersum
Cfa012691 Carpinus fangiana
Cfa021966 Carpinus fangiana
Ciclev10019196m.g Citrus clementina
CiPaw.11G081900 Carya illinoinensis
CiPaw.12G050100 Carya illinoinensis
ClCG01G004240 Citrullus lanatus
COL.COLO4_37120 Corchorus olitorius
Cpa.g.sc89.71 Carica papaya
Cre16.g689050 Chlamydomonas reinhardtii
CsaV3_5G004440 Cucumis sativus L.
CSS0004981 Camellia sinensis var. sinensis
CSS0023687 Camellia sinensis var. sinensis
CSS0035524 Camellia sinensis var. sinensis
CSS0037699 Camellia sinensis var. sinensis
DCAR_004991 Daucus carota
DCAR_008508 Daucus carota
DCAR_027762 Daucus carota
DCAR_027764 Daucus carota
DCAR_031638 Daucus carota
Dinv21659 Davidia involucrata
Dinv39170 Davidia involucrata
Dinv39171 Davidia involucrata
Duzib068G1125 Durio zibethinus
Duzib084G1186 Durio zibethinus
Duzib205G0096 Durio zibethinus
ECA233G2258 Erigeron canadensis
ECA233G3500 Erigeron canadensis
EL10Ac5g12342 Beta vulgaris
Eucgr.E00406 Eucalyptus grandis
FAN02G0755 Fragaria x ananassa
FAN04G2918 Fragaria x ananassa
FAN05G2079 Fragaria x ananassa
FAN08G3629 Fragaria x ananassa
FAN13G2133 Fragaria x ananassa
FAN18G2254 Fragaria x ananassa
FAN18G2390 Fragaria x ananassa
FAN18G3422 Fragaria x ananassa
FAN18G4353 Fragaria x ananassa
FvH4_5g19470 Fragaria vesca
FvH4_6g23261 Fragaria vesca
Glyma.01G207500 Glycine max
Glyma.05G062200 Glycine max
Glyma.11G035200 Glycine max
Glyma.14G125300 Glycine max
Glyma.17G144000 Glycine max
Glyma.17G144051 Glycine max
Gohir.A09G196500 Gossypium hirsutum
Gohir.A11G027400 Gossypium hirsutum
Gohir.A12G215400 Gossypium hirsutum
Gohir.D09G191100 Gossypium hirsutum
Gohir.D10G100150 Gossypium hirsutum
Gohir.D11G026600 Gossypium hirsutum
Gohir.D12G218000 Gossypium hirsutum
Gorai.006G213900 Gossypium raimondii
Gorai.007G028900 Gossypium raimondii
Gorai.008G233600 Gossypium raimondii
Gorai.011G109800 Gossypium raimondii
GSVIVG01005812001 Vitis vinifera
HanXRQChr08g0227741 Helianthus annuus
HanXRQChr10g0306311 Helianthus annuus
HanXRQChr16g0501091 Helianthus annuus
Haze_07942 Corylus avellana
Hma1.2p1_0316F.1_g122820 Hydrangea macrophylla
Hma1.2p1_1136F.1_g260540 Hydrangea macrophylla
HPP92_022429 Vanilla planifolia
Hund14578 Selenicereus undatus
Hund28547 Selenicereus undatus
Hund28548 Selenicereus undatus
Lalb_Chr05g0214331 Lupinus albus
Lalb_Chr05g0214351 Lupinus albus
Lalb_Chr05g0221141 Lupinus albus
Lalb_Chr09g0329981 Lupinus albus
Lalb_Chr16g0386611 Lupinus albus
Lj2g0000811 Lotus japonicus
Lj4g0020838 Lotus japonicus
Lj8A269T38 Lonicera japonica
Lsat_1_v5_gn_6_18061 Lactuca sativa
Manes.01G083700 Manihot esculenta
Manes.02G041600 Manihot esculenta
Mapoly0169s0009 Marchantia polymorpha
MCO09G755 Micromonas commoda
MD04G1060500 Malus domestica
MD13G1127300 Malus domestica
Medtr4g100640 Medicago truncatula
Medtr5g012920 Medicago truncatula
MELO3C005515.2 Cucumis melo
Migut.A01136 Erythranthe guttata
MSTRG.12124 Avicennia marina
Nitab4.5_0001381g0040 Nicotiana tabacum
Nitab4.5_0003050g0030 Nicotiana tabacum
Nn6g33873 Nelumbo nucifera
Oeu040705.1 Olea europaea
Oeu062951.1 Olea europaea
Os06g0103500 Oryza sativa ssp. japonica
Peaxi162Scf00214g00048 Petunia axillaris
PGR042G1327 Punica granatum
PGSC0003DMG400004827 Solanum tuberosum
PGSC0003DMG400004828 Solanum tuberosum
Phvul.002G056700 Phaseolus vulgaris
Phvul.003G222800 Phaseolus vulgaris
Potri.001G155500 Populus trichocarpa
Potri.003G079200 Populus trichocarpa
Pp3c14_14860 Physcomitrium patens
Prupe.5G065100 Prunus persica
Prupe.7G067100 Prunus persica
Psat2g176520 Pisum sativum
Psat4g072960 Pisum sativum
PSO063G6720 Papaver somniferum
PSO782G5462 Papaver somniferum
QL12p011360 Quercus lobata
RcHm_v2.0_Chr3g0481201 Rosa chinensis
RcHm_v2.0_Chr3g0481221 Rosa chinensis
RcHm_v2.0_Chr7g0204041 Rosa chinensis
Rhsim11G0003700 Rhododendron simsii
Sabra01G0125000 Salix brachista
Sabra01G0125200 Salix brachista
Sabra03G0049400 Salix brachista
SalBow6G3759 Salvia bowleyana
Sc22g0001000 Simmondsia chinensis
Sed0012317 Sechium edule
Sed0021431 Sechium edule
SEGI_01087 Sequoiadendron giganteum
SEGI_09162 Sequoiadendron giganteum
SEGI_20270 Sequoiadendron giganteum
SGA_v2.0_scaffold199G41219 Striga asiatica
SHI09349 Sapria himalayana
SHI09350 Sapria himalayana
SHI09353 Sapria himalayana
SMO358G0542 Selaginella moellendorffii
Solyc08g078400.3 Solanum lycopersicum
Sopen08g026880 Solanum pennellii
Sopen08g026890 Solanum pennellii
Sp4g17950 Schrenkiella parvula
Sp7g17360 Schrenkiella parvula
TAR629G1427 Trochodendron aralioides
THA.LOC104806669 Tarenaya hassleriana
THA.LOC104812770 Tarenaya hassleriana
THA.LOC104814467 Tarenaya hassleriana
THA.LOC104815504 Tarenaya hassleriana
Thecc.03G247900 Theobroma cacao
Thhalv10016360m.g Eutrema salsugineum
Thhalv10024621m.g Eutrema salsugineum
TPR.G11115 Trifolium pratense
TPR.G18112 Trifolium pratense
TPR.G18124 Trifolium pratense
TPR.G18139 Trifolium pratense
TPR.G37610 Trifolium pratense
TPR.G39553 Trifolium pratense
TWI15G0242 Tripterygium wilfordii
TWI81G0453 Tripterygium wilfordii
unitig_8.g3019 Utricularia gibba
vmacro00007 Vaccinium macrocarpon
VMungo0251G0971 Vigna mungo
VMungo1215G1615 Vigna mungo
Zm00001eb376020 Zea mays
Zm00001eb379490 Zea mays

User provided reference genes

Program Settings