Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p21340 Brassica napus
A04p29430 Brassica napus
Aa31LG5G23870 Aethionema arabicum
Aa31sc114G80 Aethionema arabicum
Actinidia11545 Actinidia chinensis
Actinidia20773 Actinidia chinensis
Actinidia32547 Actinidia chinensis
Ah.08g209980 Amaranthus hybridus
AL4G35760 Arabidopsis lyrata
Aqoxy4G02713 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0ZCW7G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.22MEII Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.998PHG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HJ3R8S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P8LEZG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PP06PB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QE55Y8 Arachis hypogaea
AT2G38480 Arabidopsis thaliana
ATR0594G080 Amborella trichopoda
Atru.chr8.2349 Acer truncatum
AUR62006297 Chenopodium quinoa
BcaB01g03681 Brassica carinata
BcaB06g29055 Brassica carinata
BcaC01g05535 Brassica carinata
BcaC02g07462 Brassica carinata
BcaC02g07463 Brassica carinata
BolC4t28174H Brassica oleracea
BraA03t11369Z Brassica rapa
BraA04t18410Z Brassica rapa
C04p66720 Brassica napus
CANSAT35G0968 Cannabis sativa
CARHR133170 Cardamine hirsuta
Carub.0004s2046 Capsella rubella
Ca_07712_v3 Cicer arietinum L.
Cc00_g13880 Coffea canephora
Cfa017104 Carpinus fangiana
Cfa017105 Carpinus fangiana
Cfa021148 Carpinus fangiana
Ciclev10012823m.g Citrus clementina
CiPaw.10G161400 Carya illinoinensis
CiPaw.10G161500 Carya illinoinensis
ClCG10G022510 Citrullus lanatus
COL.COLO4_14441 Corchorus olitorius
COL.COLO4_30298 Corchorus olitorius
Cpa.g.sc5.247 Carica papaya
CsaV3_3G033340 Cucumis sativus L.
CsaV3_4G026670 Cucumis sativus L.
CSS0036405 Camellia sinensis var. sinensis
CSS0038681 Camellia sinensis var. sinensis
DCAR_018663 Daucus carota
DCAR_023992 Daucus carota
DCAR_028890 Daucus carota
DCAR_028892 Daucus carota
Dinv12182 Davidia involucrata
Dinv35419 Davidia involucrata
Duzib093G0175 Durio zibethinus
Duzib128G1021 Durio zibethinus
EL10Ac7g16791 Beta vulgaris
Eucgr.A00628 Eucalyptus grandis
Eucgr.K02941 Eucalyptus grandis
FAN02G1495 Fragaria x ananassa
FAN05G0078 Fragaria x ananassa
FAN05G2526 Fragaria x ananassa
FAN09G3644 Fragaria x ananassa
FAN14G4900 Fragaria x ananassa
FvH4_6g10520 Fragaria vesca
Glyma.01G128000 Glycine max
Glyma.03G042800 Glycine max
Glyma.09G280300 Glycine max
Glyma.18G208700 Glycine max
Gohir.A01G230132 Gossypium hirsutum
Gohir.A01G230250 Gossypium hirsutum
Gohir.A04G095900 Gossypium hirsutum
Gohir.D01G220101 Gossypium hirsutum
Gohir.D04G135700 Gossypium hirsutum
Gorai.002G266800 Gossypium raimondii
Gorai.012G119500 Gossypium raimondii
GSVIVG01030259001 Vitis vinifera
HanXRQChr16g0509781 Helianthus annuus
Haze_21094 Corylus avellana
Haze_21095 Corylus avellana
Haze_21096 Corylus avellana
Hma1.2p1_0479F.1_g161710 Hydrangea macrophylla
Hma1.2p1_0501F.1_g167290 Hydrangea macrophylla
HPP92_001132 Vanilla planifolia
Hund03804 Selenicereus undatus
Lalb_Chr00c03g0404211 Lupinus albus
Lalb_Chr01g0023441 Lupinus albus
Lalb_Chr01g0023451 Lupinus albus
Lalb_Chr03g0043581 Lupinus albus
Lalb_Chr03g0043591 Lupinus albus
Lalb_Chr12g0207401 Lupinus albus
Lalb_Chr12g0207431 Lupinus albus
Lalb_Chr19g0124121 Lupinus albus
Lj1g0006910 Lotus japonicus
Lj2A66T65 Lonicera japonica
Lj3A945G16 Lonicera japonica
Lj3g0017137 Lotus japonicus
Lj3g0022456 Lotus japonicus
Lsat_1_v5_gn_8_103660 Lactuca sativa
Manes.09G112600 Manihot esculenta
MBI15_g01645_MAGBIO Magnolia biondii
MD04G1167600 Malus domestica
MD12G1180900 Malus domestica
Medtr4g013270 Medicago truncatula
Medtr4g015730 Medicago truncatula
Medtr7g071110 Medicago truncatula
MELO3C009126.2 Cucumis melo
MELO3C033444.2 Cucumis melo
Migut.L02054 Erythranthe guttata
Migut.O00918 Erythranthe guttata
Migut.O00963 Erythranthe guttata
MSTRG.18970 Avicennia marina
MSTRG.5536 Avicennia marina
Nitab4.5_0000047g0150 Nicotiana tabacum
Nitab4.5_0000355g0220 Nicotiana tabacum
Nitab4.5_0001226g0040 Nicotiana tabacum
Nitab4.5_0003850g0040 Nicotiana tabacum
Nn2g13279 Nelumbo nucifera
Oeu026970.1 Olea europaea
Oeu057642.1 Olea europaea
Os03g0298300 Oryza sativa ssp. japonica
Os03g0817100 Oryza sativa ssp. japonica
Os05g0344400 Oryza sativa ssp. japonica
Os07g0692200 Oryza sativa ssp. japonica
Peaxi162Scf00264g00838 Petunia axillaris
Peaxi162Scf00744g00227 Petunia axillaris
PGR031G3439 Punica granatum
PGR102G2509 Punica granatum
PGSC0003DMG400011620 Solanum tuberosum
PGSC0003DMG400011859 Solanum tuberosum
Phvul.008G090400 Phaseolus vulgaris
Phvul.010G062600 Phaseolus vulgaris
Phvul.010G062800 Phaseolus vulgaris
Potri.016G128200 Populus trichocarpa
Prupe.6G285800 Prunus persica
Prupe.6G285900 Prunus persica
Psat3g123520 Pisum sativum
Psat7g249480 Pisum sativum
PSO017G0146 Papaver somniferum
PSO017G2556 Papaver somniferum
PSO017G2842 Papaver somniferum
PSO017G5250 Papaver somniferum
PSO017G5735 Papaver somniferum
PSO017G6895 Papaver somniferum
PSO339G6233 Papaver somniferum
PSO349G0107 Papaver somniferum
PSO349G0235 Papaver somniferum
PSO349G0256 Papaver somniferum
PSO349G0320 Papaver somniferum
PSO384G2232 Papaver somniferum
QL07p033687 Quercus lobata
QL07p033728 Quercus lobata
RcHm_v2.0_Chr3g0461491 Rosa chinensis
Rhsim04G0124100 Rhododendron simsii
Rhsim04G0124200 Rhododendron simsii
Sabra16G0130200 Salix brachista
SalBow4G1866 Salvia bowleyana
Sc07g0005740 Simmondsia chinensis
Sc19g0002630 Simmondsia chinensis
Sed0001885 Sechium edule
Sed0022013 Sechium edule
Sed0022296 Sechium edule
SEGI_01255 Sequoiadendron giganteum
SEGI_01953 Sequoiadendron giganteum
SEGI_25696 Sequoiadendron giganteum
SEGI_30233 Sequoiadendron giganteum
SEGI_40256 Sequoiadendron giganteum
SGA_v2.0_scaffold110G31183 Striga asiatica
SGA_v2.0_scaffold240G44063 Striga asiatica
SHI12886 Sapria himalayana
Solyc09g014993.1 Solanum lycopersicum
Solyc10g076300.2 Solanum lycopersicum
Sopen09g007980 Solanum pennellii
Sopen10g027920 Solanum pennellii
Sp4g20810 Schrenkiella parvula
TAR623G1791 Trochodendron aralioides
THA.LOC104823359 Tarenaya hassleriana
THA.LOC104824517 Tarenaya hassleriana
Thecc.05G005700 Theobroma cacao
Thecc.05G005800 Theobroma cacao
Thhalv10017282m.g Eutrema salsugineum
TPR.G18651 Trifolium pratense
TPR.G29222 Trifolium pratense
TPR.G5191 Trifolium pratense
TWI74G0137 Tripterygium wilfordii
TWI77G0871 Tripterygium wilfordii
unitig_27.g24875 Utricularia gibba
unitig_699.g19375 Utricularia gibba
vmacro08916 Vaccinium macrocarpon
vmacro08917 Vaccinium macrocarpon
vmacro17658 Vaccinium macrocarpon
vmacro20331 Vaccinium macrocarpon
VMungo1383G0475 Vigna mungo
Zm00001eb013830 Zea mays
Zm00001eb052190 Zea mays
Zm00001eb191470 Zea mays
Zm00001eb212010 Zea mays
Zm00001eb286320 Zea mays
Zm00001eb331480 Zea mays
Zm00001eb396690 Zea mays

User provided reference genes

Program Settings