Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p33580 Brassica napus
A05p05080 Brassica napus
Aa31LG1G26560 Aethionema arabicum
Actinidia12167 Actinidia chinensis
Ah.07g199460 Amaranthus hybridus
Ah.09g230790 Amaranthus hybridus
AL4G44070 Arabidopsis lyrata
Aqoxy7G01489 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5G1BL4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.60BY7S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8Q4NXZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VCI4LX Arachis hypogaea
AT2G44970 Arabidopsis thaliana
ATR0057G072 Amborella trichopoda
ATR0705G212 Amborella trichopoda
Atru.chr5.189 Acer truncatum
Atru.chr5.190 Acer truncatum
Atru.chr5.191 Acer truncatum
Atru.chr7.1430 Acer truncatum
Atru.chr7.1431 Acer truncatum
AUR62004134 Chenopodium quinoa
AUR62010927 Chenopodium quinoa
AUR62013697 Chenopodium quinoa
AUR62021439 Chenopodium quinoa
BcaB06g29410 Brassica carinata
BcaC02g07126 Brassica carinata
BolC4t22224H Brassica oleracea
BolC4t28640H Brassica oleracea
BraA04t18820Z Brassica rapa
BraA05t19482Z Brassica rapa
C04p05930 Brassica napus
C04p71350 Brassica napus
CAN.G25.2 Capsicum annuum
CAN.G899.31 Capsicum annuum
CANSAT21G2471 Cannabis sativa
CANSAT56G1115 Cannabis sativa
CARHR140200 Cardamine hirsuta
Carub.0004s2757 Capsella rubella
Ca_17352_v3 Cicer arietinum L.
Ca_23122_v3 Cicer arietinum L.
CBR_g45285 Chara braunii
Cc02_g24790 Coffea canephora
Cc06_g10240 Coffea canephora
Cc06_g10250 Coffea canephora
CDE02G3843 Ceratophyllum demersum
CDE09G1392 Ceratophyllum demersum
CDE11G0134 Ceratophyllum demersum
Cfa011115 Carpinus fangiana
Ciclev10007928m.g Citrus clementina
Ciclev10019862m.g Citrus clementina
CiPaw.04G159800 Carya illinoinensis
CiPaw.14G023700 Carya illinoinensis
ClCG05G000330 Citrullus lanatus
ClCG11G002270 Citrullus lanatus
COL.COLO4_12450 Corchorus olitorius
Cpa.g.sc101.50 Carica papaya
Cpa.g.sc40.37 Carica papaya
Cpa.g.sc40.38 Carica papaya
CsaV3_2G002030 Cucumis sativus L.
CsaV3_3G007470 Cucumis sativus L.
CSS0015763 Camellia sinensis var. sinensis
CSS0026331 Camellia sinensis var. sinensis
DCAR_012052 Daucus carota
DCAR_031362 Daucus carota
Dinv44089 Davidia involucrata
Duzib187G1040 Durio zibethinus
Duzib268G0302 Durio zibethinus
ECA233G5590 Erigeron canadensis
ECA236G0323 Erigeron canadensis
ECA246G4615 Erigeron canadensis
EL10Ac1g00805 Beta vulgaris
EL10Ac8g18409 Beta vulgaris
Eucgr.C01011 Eucalyptus grandis
Eucgr.D02523 Eucalyptus grandis
FAN01G1926 Fragaria x ananassa
FAN03G1109 Fragaria x ananassa
FAN06G2759 Fragaria x ananassa
FAN06G3263 Fragaria x ananassa
FAN06G4758 Fragaria x ananassa
FAN23G1985 Fragaria x ananassa
FvH4_1g05810 Fragaria vesca
FvH4_7g09500 Fragaria vesca
Glyma.03G116900 Glycine max
Glyma.07G109900 Glycine max
Gohir.A07G007666 Gossypium hirsutum
Gohir.A07G007732 Gossypium hirsutum
Gohir.A08G030000 Gossypium hirsutum
Gohir.A11G077200 Gossypium hirsutum
Gohir.D07G008200 Gossypium hirsutum
Gohir.D08G040800 Gossypium hirsutum
Gohir.D11G081450 Gossypium hirsutum
Gohir.D11G081600 Gossypium hirsutum
Gorai.001G008000 Gossypium raimondii
Gorai.004G039700 Gossypium raimondii
Gorai.007G087300 Gossypium raimondii
GSVIVG01015328001 Vitis vinifera
GSVIVG01018220001 Vitis vinifera
HanXRQChr12g0381221 Helianthus annuus
HanXRQChr16g0507631 Helianthus annuus
HanXRQChr16g0530171 Helianthus annuus
Haze_02750 Corylus avellana
Hma1.2p1_0341F.1_g130550 Hydrangea macrophylla
Hma1.2p1_0945F.1_g240270 Hydrangea macrophylla
HPP92_003454 Vanilla planifolia
Hund09237 Selenicereus undatus
Hund27392 Selenicereus undatus
Hund27393 Selenicereus undatus
Lalb_Chr12g0210621 Lupinus albus
Lalb_Chr16g0388031 Lupinus albus
Lj3g0026230 Lotus japonicus
Lj4g0020736 Lotus japonicus
Lj7A661G50 Lonicera japonica
Lj9C561T4 Lonicera japonica
Lsat_1_v5_gn_4_112920 Lactuca sativa
Lsat_1_v5_gn_4_25980 Lactuca sativa
Lsat_1_v5_gn_5_26140 Lactuca sativa
Lsat_1_v5_gn_7_11360 Lactuca sativa
Lsat_1_v5_gn_8_97241 Lactuca sativa
Manes.05G051800 Manihot esculenta
Manes.16G111100 Manihot esculenta
Mapoly0163s0016 Marchantia polymorpha
MBI04_g09530_MAGBIO Magnolia biondii
MBI04_g27062_MAGBIO Magnolia biondii
MCO10G346 Micromonas commoda
MD02G1060100 Malus domestica
MD02G1218300 Malus domestica
MD07G1098600 Malus domestica
Medtr8g006370 Medicago truncatula
Medtr8g102820 Medicago truncatula
MELO3C004578.2 Cucumis melo
MELO3C005969.2 Cucumis melo
Migut.B01560 Erythranthe guttata
Migut.J01114 Erythranthe guttata
Migut.K00521 Erythranthe guttata
Nitab4.5_0000012g0230 Nicotiana tabacum
Nitab4.5_0003110g0110 Nicotiana tabacum
Nitab4.5_0003199g0050 Nicotiana tabacum
Nitab4.5_0004415g0030 Nicotiana tabacum
Nn1g00929 Nelumbo nucifera
Nn3g18171 Nelumbo nucifera
Oeu000047.1 Olea europaea
Oeu064896.1 Olea europaea
Os05g0557900 Oryza sativa ssp. japonica
Os11g0110000 Oryza sativa ssp. japonica
Os12g0110100 Oryza sativa ssp. japonica
Peaxi162Scf00001g00912 Petunia axillaris
Peaxi162Scf00001g05810 Petunia axillaris
Peaxi162Scf00377g00828 Petunia axillaris
PGR004G1697 Punica granatum
PGR142G3510 Punica granatum
PGSC0003DMG400025982 Solanum tuberosum
PGSC0003DMG400027433 Solanum tuberosum
Phvul.010G054100 Phaseolus vulgaris
Potri.014G055900 Populus trichocarpa
Potri.018G085600 Populus trichocarpa
Pp3c13_8530 Physcomitrium patens
Pp3c19_17420 Physcomitrium patens
Pp3c5_12440 Physcomitrium patens
Prupe.2G122700 Prunus persica
Prupe.7G222800 Prunus persica
Psat4g226960 Pisum sativum
PSO063G7067 Papaver somniferum
PSO566G0058 Papaver somniferum
PSO782G0434 Papaver somniferum
PSO782G1681 Papaver somniferum
QL02p042390 Quercus lobata
QL02p042393 Quercus lobata
QL04p034746 Quercus lobata
RcHm_v2.0_Chr1g0346301 Rosa chinensis
RcHm_v2.0_Chr2g0091461 Rosa chinensis
Sabra14G0041100 Salix brachista
Sabra18G0073900 Salix brachista
SalBow5G0694 Salvia bowleyana
SalBow5G3422 Salvia bowleyana
Sc02g0002930 Simmondsia chinensis
Sc08g0007830 Simmondsia chinensis
Sed0017278 Sechium edule
SEGI_05355 Sequoiadendron giganteum
SEGI_07034 Sequoiadendron giganteum
SGA_v2.0_scaffold129G34159 Striga asiatica
SGA_v2.0_scaffold52G19205 Striga asiatica
SHI13592 Sapria himalayana
SHI13593 Sapria himalayana
SMO165G0146 Selaginella moellendorffii
Solyc01g090590.3 Solanum lycopersicum
Solyc05g018210.3 Solanum lycopersicum
Sopen01g036340 Solanum pennellii
Sopen05g014950 Solanum pennellii
Sp4g27040 Schrenkiella parvula
TAR383G0989 Trochodendron aralioides
TAR503G0002 Trochodendron aralioides
TAR626G1913 Trochodendron aralioides
THA.LOC104817202 Tarenaya hassleriana
Thecc.01G387900 Theobroma cacao
Thecc.09G103600 Theobroma cacao
Thhalv10001413m.g Eutrema salsugineum
TPR.G23498 Trifolium pratense
TPR.G28932 Trifolium pratense
TWI23G0632 Tripterygium wilfordii
TWI32G0195 Tripterygium wilfordii
TWI32G0864 Tripterygium wilfordii
unitig_22.g5401 Utricularia gibba
vmacro06241 Vaccinium macrocarpon
VMungo0331G0080 Vigna mungo
Zm00001eb163330 Zea mays
Zm00001eb295510 Zea mays

User provided reference genes

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