Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p26140 Brassica napus
A05p15690 Brassica napus
Aa31LG11G6740 Aethionema arabicum
Aa31LG5G6780 Aethionema arabicum
Actinidia14598 Actinidia chinensis
Actinidia16077 Actinidia chinensis
Ah.08g221040 Amaranthus hybridus
Ah.16g103380 Amaranthus hybridus
AL1G51360 Arabidopsis lyrata
AL4G24480 Arabidopsis lyrata
AL6G15610 Arabidopsis lyrata
Aqoxy2G00928 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AI3QN3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VYGJ8S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YJ1RAA Arachis hypogaea
AT2G29700 Arabidopsis thaliana
AT5G05710 Arabidopsis thaliana
AUR62001663 Chenopodium quinoa
AUR62012232 Chenopodium quinoa
AUR62020116 Chenopodium quinoa
AUR62022864 Chenopodium quinoa
BcaB01g03144 Brassica carinata
BcaB02g10276 Brassica carinata
BcaC01g05005 Brassica carinata
BcaC02g11055 Brassica carinata
BolC3t15467H Brassica oleracea
BolC4t23636H Brassica oleracea
BraA03t11829Z Brassica rapa
BraA05t20482Z Brassica rapa
C03p31200 Brassica napus
C04p21100 Brassica napus
CAN.G394.120 Capsicum annuum
CANSAT54G2848 Cannabis sativa
CANSAT56G3040 Cannabis sativa
CARHR123040 Cardamine hirsuta
CARHR207560 Cardamine hirsuta
Carub.0004s1080 Capsella rubella
Ca_05951_v3 Cicer arietinum L.
Ca_14924_v3 Cicer arietinum L.
CBR_g3755 Chara braunii
Cc01_g14090 Coffea canephora
Cc02_g06700 Coffea canephora
CDE04G2514 Ceratophyllum demersum
CDE07G0711 Ceratophyllum demersum
Cfa001345 Carpinus fangiana
Cfa011673 Carpinus fangiana
Ciclev10013645m.g Citrus clementina
Ciclev10013789m.g Citrus clementina
Ciclev10029527m.g Citrus clementina
Ciclev10033015m.g Citrus clementina
CiPaw.01G297300 Carya illinoinensis
CiPaw.13G079300 Carya illinoinensis
ClCG02G019620 Citrullus lanatus
COL.COLO4_19131 Corchorus olitorius
COL.COLO4_25619 Corchorus olitorius
Cpa.g.sc112.38 Carica papaya
Cpa.g.sc19.194 Carica papaya
Cre12.g548900 Chlamydomonas reinhardtii
Cre14.g614350 Chlamydomonas reinhardtii
CsaV3_6G016290 Cucumis sativus L.
CSS0017433 Camellia sinensis var. sinensis
DCAR_011803 Daucus carota
DCAR_024836 Daucus carota
Dinv17977 Davidia involucrata
Dinv34404 Davidia involucrata
Duzib114G0114 Durio zibethinus
Duzib150G0551 Durio zibethinus
Duzib170G0792 Durio zibethinus
ECA238G1505 Erigeron canadensis
EL10Ac2g04811 Beta vulgaris
EL10Ac7g16151 Beta vulgaris
FAN10G1504 Fragaria x ananassa
FAN11G3530 Fragaria x ananassa
FAN16G0130 Fragaria x ananassa
FAN21G4041 Fragaria x ananassa
FAN25G1160 Fragaria x ananassa
FvH4_3g38390 Fragaria vesca
Glyma.02G256300 Glycine max
Glyma.14G060200 Glycine max
Gohir.A05G304200 Gossypium hirsutum
Gohir.A07G103800 Gossypium hirsutum
Gohir.A13G224900 Gossypium hirsutum
Gohir.D05G303100 Gossypium hirsutum
Gohir.D07G107600 Gossypium hirsutum
Gohir.D13G229900 Gossypium hirsutum
Gorai.001G115600 Gossypium raimondii
Gorai.009G322300 Gossypium raimondii
Gorai.013G260600 Gossypium raimondii
GSVIVG01024767001 Vitis vinifera
HanXRQChr08g0222161 Helianthus annuus
HanXRQChr12g0369321 Helianthus annuus
HanXRQChr17g0555421 Helianthus annuus
Haze_17210 Corylus avellana
Haze_24286 Corylus avellana
Hma1.2p1_2245F.1_g317970 Hydrangea macrophylla
HPP92_019872 Vanilla planifolia
Lalb_Chr15g0082821 Lupinus albus
Lalb_Chr17g0346711 Lupinus albus
Lalb_Chr20g0114941 Lupinus albus
Lj1P953T37 Lonicera japonica
Lj8C12T8 Lonicera japonica
Lj8C69T2 Lonicera japonica
LjContig00357g0015600 Lotus japonicus
Lsat_1_v5_gn_3_12600 Lactuca sativa
Lsat_1_v5_gn_7_35761 Lactuca sativa
Lsat_1_v5_gn_8_12501 Lactuca sativa
Manes.01G162600 Manihot esculenta
Manes.02G120600 Manihot esculenta
Manes.10G014400 Manihot esculenta
Mapoly0105s0029 Marchantia polymorpha
MBI14_g28270_MAGBIO Magnolia biondii
MCO03G282 Micromonas commoda
MCO15G511 Micromonas commoda
MD01G1149900 Malus domestica
MD04G1087100 Malus domestica
MD07G1216300 Malus domestica
MD10G1151000 Malus domestica
MD11G1076900 Malus domestica
MD11G1077100 Malus domestica
Medtr3g463520 Medicago truncatula
Medtr5g082470 Medicago truncatula
MELO3C025860.2 Cucumis melo
Migut.F00673 Erythranthe guttata
MSTRG.27322 Avicennia marina
MSTRG.8322 Avicennia marina
MSTRG.8948 Avicennia marina
Nitab4.5_0000010g0260 Nicotiana tabacum
Nitab4.5_0000802g0060 Nicotiana tabacum
Nitab4.5_0002100g0010 Nicotiana tabacum
Nitab4.5_0008493g0020 Nicotiana tabacum
Nitab4.5_0011052g0020 Nicotiana tabacum
Nn2g11439 Nelumbo nucifera
Nn2g13676 Nelumbo nucifera
Oeu025645.1 Olea europaea
Oeu028600.1 Olea europaea
Os01g0856800 Oryza sativa ssp. japonica
Os05g0447000 Oryza sativa ssp. japonica
Peaxi162Scf00540g00515 Petunia axillaris
PGR102G0824 Punica granatum
PGR142G3776 Punica granatum
PGSC0003DMG400027183 Solanum tuberosum
PGSC0003DMG400030353 Solanum tuberosum
Phvul.006G050700 Phaseolus vulgaris
Phvul.006G132900 Phaseolus vulgaris
Potri.001G250400 Populus trichocarpa
Potri.008G066700 Populus trichocarpa
Potri.009G044500 Populus trichocarpa
Potri.010G190500 Populus trichocarpa
Pp3c16_7820 Physcomitrium patens
Pp3c16_9080 Physcomitrium patens
Pp3c25_5310 Physcomitrium patens
Pp3c5_16490 Physcomitrium patens
PRCOL_00001684 Prasinoderma coloniale
PRCOL_00005688 Prasinoderma coloniale
Prupe.2G060800 Prunus persica
Prupe.2G248200 Prunus persica
Prupe.3G164400 Prunus persica
Prupe.6G059100 Prunus persica
Psat2g034360 Pisum sativum
Psat5g160040 Pisum sativum
PSO339G4817 Papaver somniferum
PSO339G5404 Papaver somniferum
PSO493G0014 Papaver somniferum
PSO801G0606 Papaver somniferum
QL01p037786 Quercus lobata
QL08p062972 Quercus lobata
RcHm_v2.0_Chr1g0369831 Rosa chinensis
RcHm_v2.0_Chr5g0069011 Rosa chinensis
RcHm_v2.0_Chr6g0311721 Rosa chinensis
Rhsim09G0176500 Rhododendron simsii
Rhsim13G0071000 Rhododendron simsii
Sabra08G0048900 Salix brachista
Sabra09G0032100 Salix brachista
SalBow6G2046 Salvia bowleyana
SalBow6G5569 Salvia bowleyana
Sc10g0002270 Simmondsia chinensis
Sed0019834 Sechium edule
SEGI_01218 Sequoiadendron giganteum
SGA_v2.0_scaffold78G25463 Striga asiatica
SMO356G0170 Selaginella moellendorffii
Solyc05g052720.1 Solanum lycopersicum
Solyc06g076890.1 Solanum lycopersicum
Sopen05g031240 Solanum pennellii
Sopen06g033280 Solanum pennellii
Sp4g12420 Schrenkiella parvula
Sp6g37180 Schrenkiella parvula
TAR369G0639 Trochodendron aralioides
TAR623G1505 Trochodendron aralioides
THA.LOC104800730 Tarenaya hassleriana
THA.LOC104816554 Tarenaya hassleriana
THA.LOC104823146 Tarenaya hassleriana
THA.LOC104826291 Tarenaya hassleriana
Thecc.09G303600 Theobroma cacao
Thecc.10G021500 Theobroma cacao
Thhalv10015014m.g Eutrema salsugineum
Thhalv10017382m.g Eutrema salsugineum
TPR.G21178 Trifolium pratense
TPR.G35122 Trifolium pratense
TWI09G0053 Tripterygium wilfordii
TWI31G0057 Tripterygium wilfordii
TWI53G1617 Tripterygium wilfordii
unitig_62.g23929 Utricularia gibba
vmacro02977 Vaccinium macrocarpon
vmacro10054 Vaccinium macrocarpon
vmacro22162 Vaccinium macrocarpon
VMungo0540G0466 Vigna mungo
VMungo0540G1366 Vigna mungo
Zm00001eb147460 Zea mays

User provided reference genes

Program Settings