Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p27770 Brassica napus
A09p45840 Brassica napus
Aa31LG5G21380 Aethionema arabicum
Actinidia07247 Actinidia chinensis
Actinidia07929 Actinidia chinensis
Actinidia24214 Actinidia chinensis
Actinidia31273 Actinidia chinensis
Ah.08g210600 Amaranthus hybridus
AL4G32350 Arabidopsis lyrata
AL4G33300 Arabidopsis lyrata
AL53U10040 Arabidopsis lyrata
AL5G33520 Arabidopsis lyrata
Aqoxy4G02783 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7QY2UT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AND8NH Arachis hypogaea
AT2G36250 Arabidopsis thaliana
AT3G52750 Arabidopsis thaliana
ATR0776G092 Amborella trichopoda
Atru.chr8.1549 Acer truncatum
AUR62006175 Chenopodium quinoa
AUR62028533 Chenopodium quinoa
BcaB01g00343 Brassica carinata
BcaB02g08555 Brassica carinata
BcaB06g28924 Brassica carinata
BcaC02g07619 Brassica carinata
BcaC07g39641 Brassica carinata
BolC4t28005H Brassica oleracea
BolC8t50416H Brassica oleracea
BraA04t18269Z Brassica rapa
BraA09t40046Z Brassica rapa
C04p65260 Brassica napus
C08p28050 Brassica napus
CAN.G1039.15 Capsicum annuum
CAN.G397.9 Capsicum annuum
CANSAT80G0964 Cannabis sativa
CARHR130520 Cardamine hirsuta
CARHR162630 Cardamine hirsuta
Carub.0004s1801 Capsella rubella
Carub.0005s1923 Capsella rubella
Ca_03917_v3 Cicer arietinum L.
Ca_09000_v3 Cicer arietinum L.
CBR_g44487 Chara braunii
Cc06_g05700 Coffea canephora
CDE02G1445 Ceratophyllum demersum
CDE08G0463 Ceratophyllum demersum
Cfa016602 Carpinus fangiana
Ciclev10011609m.g Citrus clementina
Ciclev10028361m.g Citrus clementina
CiPaw.09G013400 Carya illinoinensis
ClCG04G010030 Citrullus lanatus
ClCG10G019010 Citrullus lanatus
COL.COLO4_19883 Corchorus olitorius
COL.COLO4_29741 Corchorus olitorius
Cpa.g.sc5.25 Carica papaya
Cre02.g142186 Chlamydomonas reinhardtii
CsaV3_3G037240 Cucumis sativus L.
CsaV3_6G040670 Cucumis sativus L.
CSS0003997 Camellia sinensis var. sinensis
CSS0044137 Camellia sinensis var. sinensis
DCAR_012192 Daucus carota
DCAR_020752 Daucus carota
Dinv21213 Davidia involucrata
Dinv29480 Davidia involucrata
Dinv31681 Davidia involucrata
Dinv42557 Davidia involucrata
Duzib093G1639 Durio zibethinus
Duzib106G1071 Durio zibethinus
Duzib168G1593 Durio zibethinus
ECA247G0512 Erigeron canadensis
ECA248G0861 Erigeron canadensis
EL10Ac7g16922 Beta vulgaris
Eucgr.A02664 Eucalyptus grandis
Eucgr.K02046 Eucalyptus grandis
FAN02G2212 Fragaria x ananassa
FAN05G0796 Fragaria x ananassa
FAN05G4504 Fragaria x ananassa
FAN09G3684 Fragaria x ananassa
FAN14G0397 Fragaria x ananassa
FvH4_6g18610 Fragaria vesca
Glyma.03G195200 Glycine max
Glyma.10G071800 Glycine max
Glyma.13G153300 Glycine max
Glyma.19G194800 Glycine max
Gohir.A01G206800 Gossypium hirsutum
Gohir.A08G005000 Gossypium hirsutum
Gohir.A09G139200 Gossypium hirsutum
Gohir.A11G319300 Gossypium hirsutum
Gohir.D01G196200 Gossypium hirsutum
Gohir.D03G066700 Gossypium hirsutum
Gohir.D08G015300 Gossypium hirsutum
Gohir.D09G135400 Gossypium hirsutum
Gohir.D11G338600 Gossypium hirsutum
Gorai.002G240400 Gossypium raimondii
Gorai.004G009800 Gossypium raimondii
Gorai.006G155300 Gossypium raimondii
Gorai.007G368400 Gossypium raimondii
GSVIVG01033836001 Vitis vinifera
HanXRQChr04g0105801 Helianthus annuus
HanXRQChr08g0229921 Helianthus annuus
HanXRQChr13g0399091 Helianthus annuus
Haze_19604 Corylus avellana
Haze_23377 Corylus avellana
Haze_27441 Corylus avellana
Hma1.2p1_0084F.1_g043750 Hydrangea macrophylla
HPP92_001108 Vanilla planifolia
Hund19936 Selenicereus undatus
Lalb_Chr01g0018171 Lupinus albus
Lalb_Chr20g0111751 Lupinus albus
Lalb_Chr25g0288341 Lupinus albus
Lj1g0010332 Lotus japonicus
Lj2A136G53 Lonicera japonica
Lj3C997G16 Lonicera japonica
Lsat_1_v5_gn_5_166181 Lactuca sativa
Lsat_1_v5_gn_9_20520 Lactuca sativa
Manes.08G024800 Manihot esculenta
Manes.09G055800 Manihot esculenta
Mapoly0048s0025 Marchantia polymorpha
MCO11G402 Micromonas commoda
MD12G1035600 Malus domestica
MD14G1022400 Malus domestica
Medtr1g060010 Medicago truncatula
Medtr7g104500 Medicago truncatula
MELO3C009469.2 Cucumis melo
MELO3C024544.2 Cucumis melo
Migut.J01043 Erythranthe guttata
Migut.L01775 Erythranthe guttata
MSTRG.26641 Avicennia marina
MSTRG.5842 Avicennia marina
Nitab4.5_0000132g0040 Nicotiana tabacum
Nitab4.5_0000963g0080 Nicotiana tabacum
Nitab4.5_0001725g0140 Nicotiana tabacum
Nitab4.5_0001977g0030 Nicotiana tabacum
Nn2g14153 Nelumbo nucifera
Nn6g34908 Nelumbo nucifera
Nn7g37213 Nelumbo nucifera
Oeu014894.1 Olea europaea
Oeu026196.4 Olea europaea
Oeu047199.1 Olea europaea
Oeu047200.2 Olea europaea
Oeu047774.1 Olea europaea
Os03g0646100 Oryza sativa ssp. japonica
Os05g0443800 Oryza sativa ssp. japonica
Peaxi162Scf00163g00523 Petunia axillaris
Peaxi162Scf00290g00065 Petunia axillaris
PGR004G2028 Punica granatum
PGSC0003DMG401002661 Solanum tuberosum
Phvul.001G189700 Phaseolus vulgaris
Phvul.007G227600 Phaseolus vulgaris
Potri.004G203100 Populus trichocarpa
Potri.006G083100 Populus trichocarpa
Potri.009G164100 Populus trichocarpa
Pp3c11_17860 Physcomitrium patens
Pp3c7_11570 Physcomitrium patens
PRCOL_00006328 Prasinoderma coloniale
Prupe.7G110900 Prunus persica
Psat3g033560 Pisum sativum
Psat6g081080 Pisum sativum
PSO339G5204 Papaver somniferum
PSO339G5325 Papaver somniferum
PSO384G1997 Papaver somniferum
PSO384G2140 Papaver somniferum
QL01p012312 Quercus lobata
QL07p038824 Quercus lobata
QL07p039084 Quercus lobata
RcHm_v2.0_Chr3g0473191 Rosa chinensis
RcHm_v2.0_Chr3g0473351 Rosa chinensis
RcHm_v2.0_Chr3g0473491 Rosa chinensis
RcHm_v2.0_Chr5g0044451 Rosa chinensis
Rhsim03G0075800 Rhododendron simsii
Rhsim13G0111300 Rhododendron simsii
Sabra04G0137100 Salix brachista
Sabra06G0062800 Salix brachista
Sabra09G0128400 Salix brachista
SalBow3G0388 Salvia bowleyana
SalBow5G5067 Salvia bowleyana
Sc20g0006260 Simmondsia chinensis
Sed0005429 Sechium edule
Sed0027123 Sechium edule
Sed0027397 Sechium edule
SEGI_24127 Sequoiadendron giganteum
SGA_v2.0_scaffold184G39960 Striga asiatica
SGA_v2.0_scaffold35G14071 Striga asiatica
SMO351G0447 Selaginella moellendorffii
Solyc09g009430.3 Solanum lycopersicum
Solyc10g083490.3 Solanum lycopersicum
Sopen09g004170 Solanum pennellii
Sopen10g032960 Solanum pennellii
Sp4g18480 Schrenkiella parvula
Sp5g09580 Schrenkiella parvula
TAR623G0486 Trochodendron aralioides
TAR633G2240 Trochodendron aralioides
THA.LOC104804678 Tarenaya hassleriana
THA.LOC104804941 Tarenaya hassleriana
Thecc.05G088400 Theobroma cacao
Thecc.09G284000 Theobroma cacao
Thhalv10010342m.g Eutrema salsugineum
Thhalv10016595m.g Eutrema salsugineum
TPR.G19551 Trifolium pratense
TPR.G9906 Trifolium pratense
TWI53G0459 Tripterygium wilfordii
TWI74G0875 Tripterygium wilfordii
unitig_744.g24696 Utricularia gibba
unitig_8.g4308 Utricularia gibba
vmacro03316 Vaccinium macrocarpon
vmacro07405 Vaccinium macrocarpon
VMungo0720G1784 Vigna mungo
VMungo1383G2060 Vigna mungo
Zm00001eb348280 Zea mays
Zm00001eb434230 Zea mays

User provided reference genes

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