Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p01380 Brassica napus
A03p05410 Brassica napus
A10p25680 Brassica napus
Aa31LG3G15110 Aethionema arabicum
Aa31LG5G8860 Aethionema arabicum
Actinidia07006 Actinidia chinensis
Actinidia12279 Actinidia chinensis
Actinidia13972 Actinidia chinensis
Ah.04g159520 Amaranthus hybridus
Ah.04g159530 Amaranthus hybridus
AL4G20160 Arabidopsis lyrata
AL6G22900 Arabidopsis lyrata
Aqoxy1G00048 Aquilegia oxysepala
AT2G26920 Arabidopsis thaliana
AT5G12120 Arabidopsis thaliana
ATR0782G200 Amborella trichopoda
Atru.chr12.1215 Acer truncatum
Atru.chr3.2829 Acer truncatum
AUR62000239 Chenopodium quinoa
AUR62006586 Chenopodium quinoa
BcaB01g05429 Brassica carinata
BcaC03g13411 Brassica carinata
BcaNung06326 Brassica carinata
BcaNung06986 Brassica carinata
BolC2t06506H Brassica oleracea
BolC3t13138H Brassica oleracea
BolC9t59306H Brassica oleracea
BraA02t05117Z Brassica rapa
BraA03t09880Z Brassica rapa
BraA10t44633Z Brassica rapa
C02p05620 Brassica napus
C03p06300 Brassica napus
C09p64750 Brassica napus
CAN.G1085.2 Capsicum annuum
CAN.G65.205 Capsicum annuum
CANSAT54G0765 Cannabis sativa
CARHR119090 Cardamine hirsuta
CARHR201000 Cardamine hirsuta
Carub.0004s0742 Capsella rubella
Carub.0006s1063 Capsella rubella
Ca_06176_v3 Cicer arietinum L.
Ca_24042_v3 Cicer arietinum L.
CBR_g21937 Chara braunii
Cc01_g07150 Coffea canephora
CDE02G2499 Ceratophyllum demersum
CDE08G1075 Ceratophyllum demersum
Cfa010160 Carpinus fangiana
Cfa010971 Carpinus fangiana
Ciclev10000575m.g Citrus clementina
CiPaw.13G017500 Carya illinoinensis
CiPaw.13G146300 Carya illinoinensis
ClCG03G014330 Citrullus lanatus
ClCG11G013000 Citrullus lanatus
COL.COLO4_33266 Corchorus olitorius
Cpa.g.sc2357.1 Carica papaya
CsaV3_1G041890 Cucumis sativus L.
CsaV3_5G029490 Cucumis sativus L.
CSS0005456 Camellia sinensis var. sinensis
CSS0015276 Camellia sinensis var. sinensis
DCAR_029735 Daucus carota
Dinv02234 Davidia involucrata
Dinv29340 Davidia involucrata
Dinv31987 Davidia involucrata
Dinv35886 Davidia involucrata
Duzib150G1650 Durio zibethinus
Duzib168G0654 Durio zibethinus
Duzib170G0727 Durio zibethinus
EL10Ac4g10059 Beta vulgaris
Eucgr.G03195 Eucalyptus grandis
Eucgr.J00663 Eucalyptus grandis
FAN07G2245 Fragaria x ananassa
FAN12G1653 Fragaria x ananassa
FAN17G1557 Fragaria x ananassa
FAN22G1309 Fragaria x ananassa
FvH4_4g12840 Fragaria vesca
Glyma.02G276800 Glycine max
Glyma.13G072600 Glycine max
Glyma.13G189200 Glycine max
Glyma.14G038900 Glycine max
Glyma.15G227100 Glycine max
Glyma.20G046700 Glycine max
Gohir.A05G071800 Gossypium hirsutum
Gohir.A13G219400 Gossypium hirsutum
Gohir.D05G074600 Gossypium hirsutum
Gohir.D13G223100 Gossypium hirsutum
Gorai.009G075700 Gossypium raimondii
Gorai.013G254200 Gossypium raimondii
GSVIVG01037383001 Vitis vinifera
HanXRQChr03g0091661 Helianthus annuus
HanXRQChr13g0420971 Helianthus annuus
Haze_02965 Corylus avellana
Haze_23546 Corylus avellana
HPP92_000747 Vanilla planifolia
HPP92_000769 Vanilla planifolia
HPP92_026793 Vanilla planifolia
HPP92_026794 Vanilla planifolia
Hund21953 Selenicereus undatus
Lalb_Chr01g0007511 Lupinus albus
Lalb_Chr03g0032581 Lupinus albus
Lalb_Chr04g0259481 Lupinus albus
Lalb_Chr10g0106051 Lupinus albus
Lalb_Chr17g0347731 Lupinus albus
Lalb_Chr18g0048341 Lupinus albus
Lj2P825T11 Lonicera japonica
Lj6g0014915 Lotus japonicus
Lj9C649T9 Lonicera japonica
Lj9P649T25 Lonicera japonica
LjContig00430g0005303 Lotus japonicus
LjContig00564g0008584 Lotus japonicus
Lsat_1_v5_gn_2_36241 Lactuca sativa
Lsat_1_v5_gn_3_117820 Lactuca sativa
Manes.01G176500 Manihot esculenta
Manes.02G134500 Manihot esculenta
Manes.04G154900 Manihot esculenta
Mapoly0001s0413 Marchantia polymorpha
MBI13_g30070_MAGBIO Magnolia biondii
MBI19_g13767_MAGBIO Magnolia biondii
MD00G1091100 Malus domestica
MD04G1022000 Malus domestica
Medtr5g088750 Medicago truncatula
Medtr8g041570 Medicago truncatula
MELO3C011794.2 Cucumis melo
MELO3C015604.2 Cucumis melo
Migut.D00704 Erythranthe guttata
Migut.N02402 Erythranthe guttata
MSTRG.12424 Avicennia marina
MSTRG.17648 Avicennia marina
MSTRG.18480 Avicennia marina
MSTRG.21322 Avicennia marina
Nitab4.5_0000271g0300 Nicotiana tabacum
Nitab4.5_0008585g0010 Nicotiana tabacum
Nitab4.5_0014460g0010 Nicotiana tabacum
Nn7g37016 Nelumbo nucifera
Oeu011661.1 Olea europaea
Oeu013453.1 Olea europaea
Oeu013455.1 Olea europaea
Oeu025947.1 Olea europaea
Oeu032044.1 Olea europaea
Oeu032045.1 Olea europaea
Oeu051454.1 Olea europaea
Os05g0409000 Oryza sativa ssp. japonica
Peaxi162Scf00805g00001 Petunia axillaris
Peaxi162Scf00978g00046 Petunia axillaris
PGR031G3380 Punica granatum
PGR119G1225 Punica granatum
PGSC0003DMG400027415 Solanum tuberosum
PGSC0003DMG402005949 Solanum tuberosum
Phvul.005G014600 Phaseolus vulgaris
Phvul.006G019400 Phaseolus vulgaris
Phvul.008G204600 Phaseolus vulgaris
Phvul.011G196300 Phaseolus vulgaris
Potri.001G033600 Populus trichocarpa
Potri.001G225200 Populus trichocarpa
Potri.003G191600 Populus trichocarpa
Potri.009G021900 Populus trichocarpa
Prupe.1G172000 Prunus persica
Psat0s3383g0040 Pisum sativum
Psat4g189920 Pisum sativum
PSO339G0686 Papaver somniferum
PSO384G1016 Papaver somniferum
QL01p020739 Quercus lobata
QL04p022073 Quercus lobata
RcHm_v2.0_Chr4g0412341 Rosa chinensis
Rhsim01G0196100 Rhododendron simsii
Rhsim13G0202400 Rhododendron simsii
Sabra01G0023900 Salix brachista
Sabra03G0141300 Salix brachista
Sabra09G0013800 Salix brachista
Sabra16G0133800 Salix brachista
SalBow3G3641 Salvia bowleyana
Sc09g0001170 Simmondsia chinensis
Sed0009583 Sechium edule
Sed0025307 Sechium edule
SEGI_22205 Sequoiadendron giganteum
SGA_v2.0_scaffold16G07593 Striga asiatica
SGA_v2.0_scaffold29G12132 Striga asiatica
SMO356G0560 Selaginella moellendorffii
Solyc06g073600.4 Solanum lycopersicum
Solyc11g072160.3 Solanum lycopersicum
Sopen06g029990 Solanum pennellii
Sopen11g029810 Solanum pennellii
Sp4g08440 Schrenkiella parvula
Sp6g31510 Schrenkiella parvula
TAR369G0607 Trochodendron aralioides
TAR633G0468 Trochodendron aralioides
THA.LOC104811209 Tarenaya hassleriana
THA.LOC104816955 Tarenaya hassleriana
Thecc.09G251100 Theobroma cacao
Thhalv10001930m.g Eutrema salsugineum
Thhalv10012987m.g Eutrema salsugineum
Thhalv10028183m.g Eutrema salsugineum
TPR.G16404 Trifolium pratense
TPR.G39740 Trifolium pratense
TWI31G1453 Tripterygium wilfordii
TWI75G0787 Tripterygium wilfordii
TWI79G0279 Tripterygium wilfordii
unitig_0.g310 Utricularia gibba
unitig_52.g16868 Utricularia gibba
unitig_52.g16869 Utricularia gibba
unitig_60.g25638 Utricularia gibba
unitig_62.g23869 Utricularia gibba
unitig_62.g23870 Utricularia gibba
unitig_64.g29768 Utricularia gibba
unitig_64.g29769 Utricularia gibba
VMungo0540G2250 Vigna mungo
VMungo0647G2459 Vigna mungo
VMungo1080G0671 Vigna mungo
VMungo1127G2154 Vigna mungo
Zm00001eb287870 Zea mays
Zm00001eb349540 Zea mays

User provided reference genes

Program Settings