Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p07060 Brassica napus
A05p44790 Brassica napus
A10p23620 Brassica napus
Aa31LG11G14280 Aethionema arabicum
Aa31LG5G12450 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3662 Anthoceros agrestis
Actinidia17552 Actinidia chinensis
Actinidia38787 Actinidia chinensis
Ah.10g031670 Amaranthus hybridus
AL3G11090 Arabidopsis lyrata
AL6G26120 Arabidopsis lyrata
Aqoxy2G00011 Aquilegia oxysepala
Aqoxy3G03419 Aquilegia oxysepala
AT3G01170 Arabidopsis thaliana
AT5G15260 Arabidopsis thaliana
ATR0068G031 Amborella trichopoda
ATR0564G331 Amborella trichopoda
Atru.chr8.180 Acer truncatum
AUR62034424 Chenopodium quinoa
AUR62039801 Chenopodium quinoa
BcaB01g05068 Brassica carinata
BcaB08g36909 Brassica carinata
BcaC04g18964 Brassica carinata
BcaC05g30388 Brassica carinata
BcaC05g30488 Brassica carinata
BolC3t13302H Brassica oleracea
BolC5t35122H Brassica oleracea
BolC9t59024H Brassica oleracea
BolC9t59030H Brassica oleracea
BraA03t10028Z Brassica rapa
BraA05t23178Z Brassica rapa
BraA10t44427Z Brassica rapa
C03p08040 Brassica napus
C09p61880 Brassica napus
C09p61900 Brassica napus
C09p75380 Brassica napus
CAN.G1275.2 Capsicum annuum
CAN.G206.158 Capsicum annuum
CANSAT64G2866 Cannabis sativa
CARHR075880 Cardamine hirsuta
CARHR198060 Cardamine hirsuta
Carub.0003s0099 Capsella rubella
Carub.0006s1344 Capsella rubella
Ca_02907_v3 Cicer arietinum L.
Ca_04286_v3 Cicer arietinum L.
Ca_29847_v3 Cicer arietinum L.
Cc07_g03460 Coffea canephora
CDE09G0924 Ceratophyllum demersum
Cfa007570 Carpinus fangiana
Ciclev10012667m.g Citrus clementina
CiPaw.03G025500 Carya illinoinensis
CiPaw.04G016500 Carya illinoinensis
ClCG09G018160 Citrullus lanatus
COL.COLO4_08438 Corchorus olitorius
Cpa.g.c33094 Carica papaya
CsaV3_5G038100 Cucumis sativus L.
CSS0013635 Camellia sinensis var. sinensis
CSS0029379 Camellia sinensis var. sinensis
CSS0043902 Camellia sinensis var. sinensis
CSS0045319 Camellia sinensis var. sinensis
DCAR_011090 Daucus carota
Dinv11521 Davidia involucrata
Dinv13487 Davidia involucrata
Dinv33770 Davidia involucrata
Duzib147G0717 Durio zibethinus
Duzib187G1521 Durio zibethinus
Duzib264G0881 Durio zibethinus
ECA233G5005 Erigeron canadensis
ECA248G3966 Erigeron canadensis
Eucgr.I01946 Eucalyptus grandis
Eucgr.J01351 Eucalyptus grandis
FAN02G4285 Fragaria x ananassa
FAN05G0187 Fragaria x ananassa
FAN09G3482 Fragaria x ananassa
FAN14G4090 Fragaria x ananassa
FAN23G0240 Fragaria x ananassa
FvH4_6g48280 Fragaria vesca
Glyma.09G237100 Glycine max
Glyma.13G062600 Glycine max
Glyma.18G260400 Glycine max
Glyma.19G023000 Glycine max
Gohir.A05G366800 Gossypium hirsutum
Gohir.A05G367200 Gossypium hirsutum
Gohir.A09G015000 Gossypium hirsutum
Gohir.A11G069900 Gossypium hirsutum
Gohir.D04G047900 Gossypium hirsutum
Gohir.D04G048300 Gossypium hirsutum
Gohir.D09G013500 Gossypium hirsutum
Gohir.D11G073800 Gossypium hirsutum
Gohir.D13G103800 Gossypium hirsutum
Gorai.004G175400 Gossypium raimondii
Gorai.006G015600 Gossypium raimondii
Gorai.007G079200 Gossypium raimondii
Gorai.007G242600 Gossypium raimondii
Gorai.010G112300 Gossypium raimondii
Gorai.012G053300 Gossypium raimondii
Gorai.012G053800 Gossypium raimondii
GSVIVG01011432001 Vitis vinifera
GSVIVG01038155001 Vitis vinifera
HanXRQChr01g0021471 Helianthus annuus
HanXRQChr15g0473231 Helianthus annuus
HanXRQChr17g0556871 Helianthus annuus
Haze_14516 Corylus avellana
Hma1.2p1_0240F.1_g100460 Hydrangea macrophylla
Hma1.2p1_0678F.1_g202080 Hydrangea macrophylla
HPP92_014368 Vanilla planifolia
HPP92_019027 Vanilla planifolia
Lalb_Chr02g0159321 Lupinus albus
Lalb_Chr06g0175301 Lupinus albus
Lalb_Chr21g0318681 Lupinus albus
Lj1g0007733 Lotus japonicus
Lj2g0025050 Lotus japonicus
Lju41C11T8 Lonicera japonica
Lsat_1_v5_gn_1_68981 Lactuca sativa
Lsat_1_v5_gn_3_98961 Lactuca sativa
Lsat_1_v5_gn_6_56040 Lactuca sativa
Manes.01G092000 Manihot esculenta
Manes.02G047100 Manihot esculenta
Mapoly0008s0206 Marchantia polymorpha
MBI05_g10778_MAGBIO Magnolia biondii
MBI05_g42874_MAGBIO Magnolia biondii
MBI13_g31529_MAGBIO Magnolia biondii
MBI19_g09312_MAGBIO Magnolia biondii
MD00G1124900 Malus domestica
MD00G1131300 Malus domestica
MD09G1052400 Malus domestica
Medtr6g012390 Medicago truncatula
Medtr7g010930 Medicago truncatula
MELO3C021992.2 Cucumis melo
Migut.K01321 Erythranthe guttata
Migut.N00535 Erythranthe guttata
MSTRG.15472 Avicennia marina
MSTRG.23930 Avicennia marina
MSTRG.3245 Avicennia marina
MSTRG.3330 Avicennia marina
Nitab4.5_0000274g0240 Nicotiana tabacum
Nitab4.5_0002980g0120 Nicotiana tabacum
Nitab4.5_0004672g0010 Nicotiana tabacum
Nitab4.5_0009980g0020 Nicotiana tabacum
Nn2g15891 Nelumbo nucifera
Nn4g23193 Nelumbo nucifera
Nn7g35817 Nelumbo nucifera
Oeu021384.1 Olea europaea
Oeu027850.1 Olea europaea
Oeu047917.1 Olea europaea
Os01g0815100 Oryza sativa ssp. japonica
Os05g0488500 Oryza sativa ssp. japonica
Peaxi162Scf00011g00292 Petunia axillaris
Peaxi162Scf00186g00103 Petunia axillaris
PGR004G2413 Punica granatum
PGR083G2850 Punica granatum
PGSC0003DMG400001424 Solanum tuberosum
PGSC0003DMG400006631 Solanum tuberosum
Phvul.004G029200 Phaseolus vulgaris
Phvul.008G036900 Phaseolus vulgaris
Potri.004G121900 Populus trichocarpa
Potri.017G084500 Populus trichocarpa
Pp3c20_17430 Physcomitrium patens
Prupe.3G266300 Prunus persica
Psat1g073560 Pisum sativum
Psat3g197720 Pisum sativum
PSO013G0306 Papaver somniferum
PSO541G5424 Papaver somniferum
PSO675G0685 Papaver somniferum
PSO832G1555 Papaver somniferum
QL02p082460 Quercus lobata
RcHm_v2.0_Chr2g0167781 Rosa chinensis
Rhsim08G0070000 Rhododendron simsii
Rhsim10G0032900 Rhododendron simsii
Rhsim10G0038500 Rhododendron simsii
Rhsim13G0234300 Rhododendron simsii
Sabra17G0074400 Salix brachista
SalBow1G1139 Salvia bowleyana
SalBow1G3720 Salvia bowleyana
SalBow1G6828 Salvia bowleyana
SalBow1G7917 Salvia bowleyana
Sc10g0003540 Simmondsia chinensis
Sed0001013 Sechium edule
Sed0014049 Sechium edule
SEGI_24439 Sequoiadendron giganteum
SGA_v2.0_scaffold205G41795 Striga asiatica
SGA_v2.0_scaffold236G43772 Striga asiatica
SGA_v2.0_scaffold3G01695 Striga asiatica
SGA_v2.0_scaffold413G51192 Striga asiatica
SMO236G0127 Selaginella moellendorffii
Solyc02g067250.3 Solanum lycopersicum
Solyc02g088040.1 Solanum lycopersicum
Sopen02g016430 Solanum pennellii
Sopen02g032760 Solanum pennellii
Sp3g00950 Schrenkiella parvula
Sp6g28820 Schrenkiella parvula
TAR371G1283 Trochodendron aralioides
TAR374G1680 Trochodendron aralioides
TAR622G0207 Trochodendron aralioides
TAR623G1490 Trochodendron aralioides
THA.LOC104821027 Tarenaya hassleriana
THA.LOC104822357 Tarenaya hassleriana
Thecc.04G083600 Theobroma cacao
Thhalv10015333m.g Eutrema salsugineum
Thhalv10021455m.g Eutrema salsugineum
TPR.G33565 Trifolium pratense
TPR.G8808 Trifolium pratense
TWI32G0272 Tripterygium wilfordii
TWI60G1528 Tripterygium wilfordii
unitig_32.g10748 Utricularia gibba
unitig_32.g11778 Utricularia gibba
unitig_748.g8616 Utricularia gibba
VMungo0464G1424 Vigna mungo
VMungo1383G1218 Vigna mungo
Zm00001eb369090 Zea mays

User provided reference genes

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