Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A10p07750 Brassica napus
Actinidia06640 Actinidia chinensis
Actinidia29602 Actinidia chinensis
AL1G51910 Arabidopsis lyrata
AL1G64600 Arabidopsis lyrata
Aqoxy3G00817 Aquilegia oxysepala
Aqoxy5G02188 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea
AT1G43790 Arabidopsis thaliana
AT5G48920 Arabidopsis thaliana
Atru.chr13.1710 Acer truncatum
Atru.chr4.839 Acer truncatum
AUR62003600 Chenopodium quinoa
AUR62007209 Chenopodium quinoa
AUR62013490 Chenopodium quinoa
AUR62017911 Chenopodium quinoa
AUR62026786 Chenopodium quinoa
AUR62043709 Chenopodium quinoa
BcaB03g16849 Brassica carinata
BcaB07g33974 Brassica carinata
BcaC06g36741 Brassica carinata
BcaC08g42822 Brassica carinata
BolC6t35162H Brassica oleracea
BolC7t40496H Brassica oleracea
BraA07t27814Z Brassica rapa
BraSC36t46027Z Brassica rapa
C06p00330 Brassica napus
C07p00500 Brassica napus
CAN.G1012.7 Capsicum annuum
CAN.G375.87 Capsicum annuum
CAN.G833.1 Capsicum annuum
CAN.G833.2 Capsicum annuum
CANSAT11G1058 Cannabis sativa
CANSAT11G1227 Cannabis sativa
CANSAT11G1421 Cannabis sativa
CANSAT25G0207 Cannabis sativa
CARHR035480 Cardamine hirsuta
CARHR046070 Cardamine hirsuta
Carub.0001s3477 Capsella rubella
Carub.0001s4477 Capsella rubella
Ca_12820_v3 Cicer arietinum L.
Cfa013717 Carpinus fangiana
Cfa018365 Carpinus fangiana
Ciclev10003780m.g Citrus clementina
CiPaw.04G086500 Carya illinoinensis
CiPaw.07G170400 Carya illinoinensis
CiPaw.15G021500 Carya illinoinensis
CiPaw.16G017800 Carya illinoinensis
ClCG09G009790 Citrullus lanatus
COL.COLO4_08943 Corchorus olitorius
COL.COLO4_11973 Corchorus olitorius
COL.COLO4_14024 Corchorus olitorius
Cpa.g.sc36.192 Carica papaya
Cpa.g.sc42.130 Carica papaya
Cpa.g.sc49.66 Carica papaya
CsaV3_6G030980 Cucumis sativus L.
CSS0000461 Camellia sinensis var. sinensis
CSS0023777 Camellia sinensis var. sinensis
DCAR_001362 Daucus carota
DCAR_007049 Daucus carota
Dinv24330 Davidia involucrata
Dinv25809 Davidia involucrata
Duzib041G0166 Durio zibethinus
Duzib093G0910 Durio zibethinus
Duzib093G1486 Durio zibethinus
Duzib116G0231 Durio zibethinus
Duzib116G0727 Durio zibethinus
Duzib147G0063 Durio zibethinus
Duzib264G1053 Durio zibethinus
ECA232G2509 Erigeron canadensis
ECA238G1798 Erigeron canadensis
ECA246G0569 Erigeron canadensis
ECA246G3613 Erigeron canadensis
ECA246G5022 Erigeron canadensis
EL10Ac6g15278 Beta vulgaris
EL10Ac7g17632 Beta vulgaris
FAN04G2496 Fragaria x ananassa
FAN08G0659 Fragaria x ananassa
FAN15G3500 Fragaria x ananassa
FAN18G4281 Fragaria x ananassa
FAN20G0153 Fragaria x ananassa
FAN24G0119 Fragaria x ananassa
FvH4_2g14670 Fragaria vesca
FvH4_5g36070 Fragaria vesca
Glyma.14G121800 Glycine max
Glyma.14G122000 Glycine max
Gohir.A02G066500 Gossypium hirsutum
Gohir.A11G224804 Gossypium hirsutum
Gohir.D02G072400 Gossypium hirsutum
Gohir.D11G228940 Gossypium hirsutum
Gorai.003G068900 Gossypium raimondii
Gorai.005G081600 Gossypium raimondii
HanXRQChr04g0125201 Helianthus annuus
HanXRQChr05g0161081 Helianthus annuus
HanXRQChr08g0232541 Helianthus annuus
Haze_17704 Corylus avellana
Haze_22364 Corylus avellana
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla
Hma1.2p1_1666F.1_g296470 Hydrangea macrophylla
HPP92_002045 Vanilla planifolia
Lalb_Chr23g0271351 Lupinus albus
Lalb_Chr25g0281721 Lupinus albus
Lj1g0026176 Lotus japonicus
Lj2C604T2 Lonicera japonica
Lj2C604T3 Lonicera japonica
Lj2C604T4 Lonicera japonica
Lsat_1_v5_gn_5_108760 Lactuca sativa
Lsat_1_v5_gn_5_108780 Lactuca sativa
Lsat_1_v5_gn_9_107661 Lactuca sativa
Manes.12G153900 Manihot esculenta
Manes.18G062666 Manihot esculenta
Manes.18G087500 Manihot esculenta
MBI06_g43012_MAGBIO Magnolia biondii
MD05G1014900 Malus domestica
MD10G1014900 Malus domestica
MD10G1015000 Malus domestica
Medtr1g008620 Medicago truncatula
Medtr1g008675 Medicago truncatula
Medtr1g029140 Medicago truncatula
MELO3C023688.2 Cucumis melo
MELO3C027328.2 Cucumis melo
Migut.B00438 Erythranthe guttata
Migut.M00600 Erythranthe guttata
Migut.N03236 Erythranthe guttata
MSTRG.1375 Avicennia marina
Nitab4.5_0000299g0020 Nicotiana tabacum
Nitab4.5_0001140g0230 Nicotiana tabacum
Nitab4.5_0002974g0030 Nicotiana tabacum
Nitab4.5_0004770g0030 Nicotiana tabacum
Nitab4.5_0008388g0020 Nicotiana tabacum
Nitab4.5_0015327g0010 Nicotiana tabacum
Nn1g06203 Nelumbo nucifera
Nn1g06205 Nelumbo nucifera
Nn5g28622 Nelumbo nucifera
Nn5g28623 Nelumbo nucifera
Nn5g29958 Nelumbo nucifera
Oeu013783.1 Olea europaea
Oeu030532.1 Olea europaea
Os08g0108300 Oryza sativa ssp. japonica
Peaxi162Scf00033g00086 Petunia axillaris
Peaxi162Scf00263g00033 Petunia axillaris
PGR002G0007 Punica granatum
PGR002G0009 Punica granatum
PGR031G0996 Punica granatum
PGR042G3889 Punica granatum
PGR044G0858 Punica granatum
PGR044G1758 Punica granatum
PGSC0003DMG400001039 Solanum tuberosum
PGSC0003DMG400024810 Solanum tuberosum
PGSC0003DMG400024811 Solanum tuberosum
PGSC0003DMG400027629 Solanum tuberosum
PGSC0003DMG400030777 Solanum tuberosum
PGSC0003DMG400030778 Solanum tuberosum
Phvul.001G052300 Phaseolus vulgaris
Phvul.001G073300 Phaseolus vulgaris
Potri.002G072000 Populus trichocarpa
Potri.005G060700 Populus trichocarpa
Potri.005G160500 Populus trichocarpa
Potri.007G108100 Populus trichocarpa
Prupe.1G525500 Prunus persica
Prupe.8G018800 Prunus persica
Psat6g033720 Pisum sativum
Psat6g033800 Pisum sativum
Psat6g039960 Pisum sativum
PSO017G4320 Papaver somniferum
PSO126G0001 Papaver somniferum
PSO170G2020 Papaver somniferum
QL02p025320 Quercus lobata
QL02p025328 Quercus lobata
QL06p029227 Quercus lobata
QL09p016276 Quercus lobata
QL09p016294 Quercus lobata
RcHm_v2.0_Chr6g0277141 Rosa chinensis
RcHm_v2.0_Chr7g0237881 Rosa chinensis
Rhsim07G0207100 Rhododendron simsii
Rhsim10G0136200 Rhododendron simsii
RhsimUnG0132700 Rhododendron simsii
Sabra05G0121700 Salix brachista
SalBow3G1723 Salvia bowleyana
SalBow6G1670 Salvia bowleyana
Sc02g0004420 Simmondsia chinensis
Sc16g0003890 Simmondsia chinensis
Sed0020885 Sechium edule
Sed0026893 Sechium edule
SGA_v2.0_scaffold25G11158 Striga asiatica
SGA_v2.0_scaffold32G13006 Striga asiatica
SGA_v2.0_scaffold73G24343 Striga asiatica
Solyc03g033280.1 Solanum lycopersicum
Solyc03g033290.1 Solanum lycopersicum
Solyc06g054660.1 Solanum lycopersicum
Solyc07g045590.1 Solanum lycopersicum
Sopen06g019720 Solanum pennellii
Sopen07g030130 Solanum pennellii
Sp1g32910 Schrenkiella parvula
Sp1g41920 Schrenkiella parvula
TAR381G0487 Trochodendron aralioides
THA.LOC104800071 Tarenaya hassleriana
THA.LOC104806849 Tarenaya hassleriana
THA.LOC104827412 Tarenaya hassleriana
Thecc.01G128000 Theobroma cacao
Thecc.08G065300 Theobroma cacao
Thecc.08G144600 Theobroma cacao
Thhalv10012251m.g Eutrema salsugineum
Thhalv10012331m.g Eutrema salsugineum
TPR.G12083 Trifolium pratense
TPR.G33315 Trifolium pratense
TWI32G0122 Tripterygium wilfordii
TWI60G1060 Tripterygium wilfordii
TWI79G1413 Tripterygium wilfordii
VMungo0647G2071 Vigna mungo
Zm00001eb260320 Zea mays

User provided reference genes

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