Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00600 Brassica napus
A09p21870 Brassica napus
Aa31LG6G15550 Aethionema arabicum
Aa31LG9G16300 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_340.172 Anthoceros agrestis
Actinidia10887 Actinidia chinensis
Ah.03g142600 Amaranthus hybridus
Ah.15g089890 Amaranthus hybridus
AL7G11910 Arabidopsis lyrata
AL8G12970 Arabidopsis lyrata
Aqoxy6G00548 Aquilegia oxysepala
Aqoxy7G04157 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.M7426M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U3RWIM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X3NPJM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZYU4S1 Arachis hypogaea
AT4G39710 Arabidopsis thaliana
AT5G45680 Arabidopsis thaliana
ATR0564G254 Amborella trichopoda
ATR0763G206 Amborella trichopoda
Atru.chr10.260 Acer truncatum
Atru.chr4.246 Acer truncatum
AUR62002037 Chenopodium quinoa
AUR62003760 Chenopodium quinoa
BcaB07g30875 Brassica carinata
BcaC04g21750 Brassica carinata
BcaNung00893 Brassica carinata
BcaNung05544 Brassica carinata
BcaNung05545 Brassica carinata
BolC1t00076H Brassica oleracea
BolC9t55668H Brassica oleracea
BraA01t00068Z Brassica rapa
BraA09t37790Z Brassica rapa
C01p00740 Brassica napus
C09p28030 Brassica napus
CAN.G396.7 Capsicum annuum
CAN.G727.3 Capsicum annuum
CANSAT01G2977 Cannabis sativa
CANSAT35G1671 Cannabis sativa
CARHR176290 Cardamine hirsuta
CARHR247010 Cardamine hirsuta
Carub.0007s0159 Capsella rubella
Carub.0008s0233 Capsella rubella
Ca_17712_v3 Cicer arietinum L.
Ca_18219_v3 Cicer arietinum L.
CBR_g84888 Chara braunii
Cc00_g20380 Coffea canephora
Cc07_g15630 Coffea canephora
CDE11G1203 Ceratophyllum demersum
Cfa002717 Carpinus fangiana
Ciclev10016645m.g Citrus clementina
Ciclev10027543m.g Citrus clementina
CiPaw.04G095600 Carya illinoinensis
CiPaw.10G107200 Carya illinoinensis
ClCG01G018990 Citrullus lanatus
ClCG01G025870 Citrullus lanatus
ClCG06G014580 Citrullus lanatus
COL.COLO4_11054 Corchorus olitorius
COL.COLO4_23721 Corchorus olitorius
Cpa.g.sc231.3 Carica papaya
Cpa.g.sc30.89 Carica papaya
Cre16.g675500 Chlamydomonas reinhardtii
Cre16.g675550 Chlamydomonas reinhardtii
CsaV3_6G045680 Cucumis sativus L.
CsaV3_6G053090 Cucumis sativus L.
CSS0002133 Camellia sinensis var. sinensis
CSS0010277 Camellia sinensis var. sinensis
DCAR_003741 Daucus carota
DCAR_014246 Daucus carota
Dinv16317 Davidia involucrata
Dinv17873 Davidia involucrata
Duzib114G0611 Durio zibethinus
Duzib147G0218 Durio zibethinus
Duzib264G1096 Durio zibethinus
ECA246G2647 Erigeron canadensis
ECA246G4980 Erigeron canadensis
EL10Ac6g15067 Beta vulgaris
EL10Ac7g17244 Beta vulgaris
Eucgr.E04322 Eucalyptus grandis
Eucgr.I00381 Eucalyptus grandis
FAN16G2860 Fragaria x ananassa
FAN19G3171 Fragaria x ananassa
FAN23G0210 Fragaria x ananassa
FAN26G1706 Fragaria x ananassa
FAN28G0067 Fragaria x ananassa
FAN28G0924 Fragaria x ananassa
FvH4_1g21630 Fragaria vesca
FvH4_3g13210 Fragaria vesca
Glyma.05G181401 Glycine max
Glyma.08G089700 Glycine max
Glyma.08G139100 Glycine max
Gohir.A11G199300 Gossypium hirsutum
Gohir.A12G076700 Gossypium hirsutum
Gohir.D11G224900 Gossypium hirsutum
Gohir.D12G075000 Gossypium hirsutum
Gorai.007G242100 Gossypium raimondii
Gorai.008G083200 Gossypium raimondii
GSVIVG01012171001 Vitis vinifera
GSVIVG01022183001 Vitis vinifera
HanXRQChr02g0041131 Helianthus annuus
HanXRQChr12g0380041 Helianthus annuus
Haze_24218 Corylus avellana
Haze_24993 Corylus avellana
Hma1.2p1_0011F.1_g007100 Hydrangea macrophylla
Hma1.2p1_1220F.1_g268100 Hydrangea macrophylla
Hma1.2p1_2907F.1_g330130 Hydrangea macrophylla
HPP92_026323 Vanilla planifolia
Hund28924 Selenicereus undatus
Hund28927 Selenicereus undatus
Lalb_Chr07g0184971 Lupinus albus
Lalb_Chr07g0188181 Lupinus albus
Lj2C341T3 Lonicera japonica
Lj4A883G25 Lonicera japonica
Lj4C880G13 Lonicera japonica
Lj4g0009095 Lotus japonicus
Lj4g0013728 Lotus japonicus
Lsat_1_v5_gn_3_102761 Lactuca sativa
Lsat_1_v5_gn_5_41561 Lactuca sativa
Manes.13G090300 Manihot esculenta
Manes.16G058400 Manihot esculenta
Mapoly0021s0084 Marchantia polymorpha
MBI02_g19401_MAGBIO Magnolia biondii
MBI18_g18634_MAGBIO Magnolia biondii
MCO16G300 Micromonas commoda
MD05G1244300 Malus domestica
MD15G1328100 Malus domestica
Medtr4g094785 Medicago truncatula
Medtr8g091410 Medicago truncatula
MELO3C007001.2 Cucumis melo
MELO3C007778.2 Cucumis melo
Migut.A00401 Erythranthe guttata
Migut.L00100 Erythranthe guttata
MSTRG.25816 Avicennia marina
MSTRG.3797 Avicennia marina
Nitab4.5_0000214g0120 Nicotiana tabacum
Nitab4.5_0000518g0080 Nicotiana tabacum
Nitab4.5_0000989g0090 Nicotiana tabacum
Nitab4.5_0013324g0020 Nicotiana tabacum
Nn1g05260 Nelumbo nucifera
Nn7g38392 Nelumbo nucifera
Oeu014162.1 Olea europaea
Oeu028402.1 Olea europaea
Os02g0751600 Oryza sativa ssp. japonica
Os06g0663800 Oryza sativa ssp. japonica
Peaxi162Scf00045g01826 Petunia axillaris
Peaxi162Scf00204g00097 Petunia axillaris
PGR004G2425 Punica granatum
PGR042G3822 Punica granatum
PGSC0003DMG400022039 Solanum tuberosum
PGSC0003DMG400026290 Solanum tuberosum
Phvul.002G187500 Phaseolus vulgaris
Phvul.002G262400 Phaseolus vulgaris
Potri.001G075500 Populus trichocarpa
Potri.005G079700 Populus trichocarpa
Potri.007G087401 Populus trichocarpa
Pp3c1_3210 Physcomitrium patens
PRCOL_00005898 Prasinoderma coloniale
Prupe.4G119400 Prunus persica
Prupe.6G179400 Prunus persica
Psat7g053080 Pisum sativum
Psat7g087160 Pisum sativum
PSO133G0088 Papaver somniferum
PSO541G3535 Papaver somniferum
PSO541G6279 Papaver somniferum
PSO675G4171 Papaver somniferum
QL06p050463 Quercus lobata
QL11p011762 Quercus lobata
RcHm_v2.0_Chr2g0115501 Rosa chinensis
RcHm_v2.0_Chr5g0021551 Rosa chinensis
RcHm_v2.0_Chr7g0219431 Rosa chinensis
Rhsim10G0156600 Rhododendron simsii
Rhsim13G0134900 Rhododendron simsii
Sabra01G0053500 Salix brachista
Sabra05G0065400 Salix brachista
SalBow4G0098 Salvia bowleyana
SalBow5G1508 Salvia bowleyana
SalBow5G3726 Salvia bowleyana
Sc24g0002890 Simmondsia chinensis
Sed0011311 Sechium edule
Sed0019790 Sechium edule
SEGI_04974 Sequoiadendron giganteum
SEGI_05504 Sequoiadendron giganteum
SGA_v2.0_scaffold193G40688 Striga asiatica
SMO115G0312 Selaginella moellendorffii
SMO166G0071 Selaginella moellendorffii
SMO266G0027 Selaginella moellendorffii
SMO266G0056 Selaginella moellendorffii
Solyc04g054520.3 Solanum lycopersicum
Solyc08g006540.4 Solanum lycopersicum
Sopen04g024340 Solanum pennellii
Sopen08g002500 Solanum pennellii
Sp2g10570 Schrenkiella parvula
Sp7g36180 Schrenkiella parvula
TAR376G0231 Trochodendron aralioides
TAR376G0781 Trochodendron aralioides
TAR624G0683 Trochodendron aralioides
TAR624G1009 Trochodendron aralioides
THA.LOC104812697 Tarenaya hassleriana
Thecc.01G107300 Theobroma cacao
Thecc.10G069800 Theobroma cacao
Thhalv10001027m.g Eutrema salsugineum
Thhalv10026198m.g Eutrema salsugineum
TPR.G2221 Trifolium pratense
TPR.G27395 Trifolium pratense
TWI38G1955 Tripterygium wilfordii
TWI77G0598 Tripterygium wilfordii
unitig_747.g21822 Utricularia gibba
unitig_747.g21898 Utricularia gibba
vmacro03564 Vaccinium macrocarpon
vmacro12938 Vaccinium macrocarpon
VMungo0251G1599 Vigna mungo
VMungo0251G3192 Vigna mungo
Zm00001eb255120 Zea mays
Zm00001eb389700 Zea mays

User provided reference genes

Program Settings