Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p08810 Brassica napus
A03p13050 Brassica napus
A06p13430 Brassica napus
A09p28910 Brassica napus
A10p14320 Brassica napus
Aa31LG3G12880 Aethionema arabicum
Aa31LG4G3050 Aethionema arabicum
Aa31LG7G2200 Aethionema arabicum
Actinidia25242 Actinidia chinensis
Actinidia39103 Actinidia chinensis
Actinidia39710 Actinidia chinensis
AL1G29780 Arabidopsis lyrata
AL2G32370 Arabidopsis lyrata
AL8G32890 Arabidopsis lyrata
Aqoxy7G04029 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea
AT1G17490 Arabidopsis thaliana
AT1G72690 Arabidopsis thaliana
AT5G57000 Arabidopsis thaliana
ATR0789G083 Amborella trichopoda
Atru.chr1.3787 Acer truncatum
Atru.chr7.1621 Acer truncatum
AUR62001519 Chenopodium quinoa
AUR62009849 Chenopodium quinoa
BcaB01g04436 Brassica carinata
BcaB03g15008 Brassica carinata
BcaB05g22307 Brassica carinata
BcaB08g36028 Brassica carinata
BcaC01g06458 Brassica carinata
BcaC03g14186 Brassica carinata
BcaC04g20028 Brassica carinata
BcaNung05246 Brassica carinata
BcaNung05566 Brassica carinata
BcaNung05568 Brassica carinata
BolC2t07595H Brassica oleracea
BolC3t13964H Brassica oleracea
BolC5t30295H Brassica oleracea
BolC9t57711H Brassica oleracea
BraA02t05948Z Brassica rapa
BraA03t10615Z Brassica rapa
BraA06t24495Z Brassica rapa
BraA09t38454Z Brassica rapa
BraA10t43522Z Brassica rapa
C02p14700 Brassica napus
C03p15230 Brassica napus
C05p15920 Brassica napus
C06p34720 Brassica napus
C09p48650 Brassica napus
CANSAT56G1439 Cannabis sativa
CANSAT56G2721 Cannabis sativa
CARHR018090 Cardamine hirsuta
CARHR065610 Cardamine hirsuta
CARHR270740 Cardamine hirsuta
Carub.0001s1726 Capsella rubella
Carub.0002s1954 Capsella rubella
Carub.0008s1748 Capsella rubella
Ca_23334_v3 Cicer arietinum L.
Ca_26161_v3 Cicer arietinum L.
Cc04_g01740 Coffea canephora
CDE05G2517 Ceratophyllum demersum
Cfa003064 Carpinus fangiana
Cfa003563 Carpinus fangiana
Ciclev10009462m.g Citrus clementina
Ciclev10026836m.g Citrus clementina
CiPaw.01G223100 Carya illinoinensis
CiPaw.02G138700 Carya illinoinensis
CiPaw.03G213000 Carya illinoinensis
ClCG05G000830 Citrullus lanatus
ClCG09G000780 Citrullus lanatus
COL.COLO4_18181 Corchorus olitorius
COL.COLO4_30681 Corchorus olitorius
Cpa.g.sc25.72 Carica papaya
CsaV3_3G008070 Cucumis sativus L.
CsaV3_7G034700 Cucumis sativus L.
CSS0012761 Camellia sinensis var. sinensis
CSS0032672 Camellia sinensis var. sinensis
DCAR_026391 Daucus carota
DCAR_031339 Daucus carota
DCAR_031341 Daucus carota
Dinv36782 Davidia involucrata
Dinv37898 Davidia involucrata
Duzib160G0096 Durio zibethinus
Duzib168G0217 Durio zibethinus
ECA236G3496 Erigeron canadensis
ECA247G2422 Erigeron canadensis
EL10Ac7g16367 Beta vulgaris
Eucgr.C00871 Eucalyptus grandis
FAN05G5076 Fragaria x ananassa
FAN09G2388 Fragaria x ananassa
FAN14G3690 Fragaria x ananassa
FAN19G2918 Fragaria x ananassa
FAN23G0786 Fragaria x ananassa
FAN26G0800 Fragaria x ananassa
FAN26G1453 Fragaria x ananassa
FAN28G2679 Fragaria x ananassa
FvH4_1g07820 Fragaria vesca
FvH4_6g33970 Fragaria vesca
Glyma.07G008200 Glycine max
Glyma.08G191200 Glycine max
Glyma.15G170900 Glycine max
Gohir.A10G058000 Gossypium hirsutum
Gohir.D10G059800 Gossypium hirsutum
Gorai.001G012800 Gossypium raimondii
Gorai.011G063800 Gossypium raimondii
GSVIVG01015179001 Vitis vinifera
GSVIVG01016802001 Vitis vinifera
HanXRQChr02g0031751 Helianthus annuus
HanXRQChr04g0126171 Helianthus annuus
HanXRQChr06g0178591 Helianthus annuus
Haze_15983 Corylus avellana
Haze_25933 Corylus avellana
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla
HPP92_005498 Vanilla planifolia
HPP92_006471 Vanilla planifolia
HPP92_006473 Vanilla planifolia
HPP92_007657 Vanilla planifolia
Hund20825 Selenicereus undatus
Lalb_Chr04g0263271 Lupinus albus
Lalb_Chr08g0232341 Lupinus albus
Lj3g0007714 Lotus japonicus
Lj4C292G2 Lonicera japonica
Lj6g0026431 Lotus japonicus
Lsat_1_v5_gn_1_35700 Lactuca sativa
Lsat_1_v5_gn_5_142981 Lactuca sativa
Lsat_1_v5_gn_8_86760 Lactuca sativa
Manes.11G024400 Manihot esculenta
Manes.16G100500 Manihot esculenta
MBI04_g36912_MAGBIO Magnolia biondii
MD02G1082200 Malus domestica
MD09G1190500 Malus domestica
MD13G1283500 Malus domestica
MD15G1209800 Malus domestica
Medtr2g039890 Medicago truncatula
Medtr8g017610 Medicago truncatula
MELO3C006025.2 Cucumis melo
MELO3C024380.2 Cucumis melo
Migut.D00960 Erythranthe guttata
Migut.J00580 Erythranthe guttata
MSTRG.4775 Avicennia marina
MSTRG.6003 Avicennia marina
Nitab4.5_0000255g0290 Nicotiana tabacum
Nitab4.5_0000415g0010 Nicotiana tabacum
Nitab4.5_0002824g0070 Nicotiana tabacum
Nitab4.5_0005918g0030 Nicotiana tabacum
Nitab4.5_0006462g0010 Nicotiana tabacum
Nitab4.5_0009992g0010 Nicotiana tabacum
Nn6g35523 Nelumbo nucifera
Oeu004201.1 Olea europaea
Oeu017609.1 Olea europaea
Os09g0363700 Oryza sativa ssp. japonica
Peaxi162Scf00498g00436 Petunia axillaris
PGR102G1556 Punica granatum
PGR142G0437 Punica granatum
PGSC0003DMG400000275 Solanum tuberosum
PGSC0003DMG400004852 Solanum tuberosum
Phvul.009G231100 Phaseolus vulgaris
Phvul.010G137200 Phaseolus vulgaris
Potri.004G095300 Populus trichocarpa
Potri.006G148000 Populus trichocarpa
Potri.017G119600 Populus trichocarpa
Prupe.3G046400 Prunus persica
Prupe.7G206700 Prunus persica
Psat1g140480 Pisum sativum
Psat4g187480 Pisum sativum
PSO210G1081 Papaver somniferum
PSO210G2488 Papaver somniferum
QL02p062228 Quercus lobata
QL05p009982 Quercus lobata
RcHm_v2.0_Chr2g0093691 Rosa chinensis
RcHm_v2.0_Chr2g0144001 Rosa chinensis
RcHm_v2.0_Chr3g0459511 Rosa chinensis
Rhsim05G0017200 Rhododendron simsii
Rhsim08G0235200 Rhododendron simsii
Sabra04G0064600 Salix brachista
Sabra06G0117100 Salix brachista
SalBow6G6091 Salvia bowleyana
SalBow7G1866 Salvia bowleyana
Sc14g0000670 Simmondsia chinensis
Sc14g0000680 Simmondsia chinensis
Sc15g0000270 Simmondsia chinensis
Sc18g0002230 Simmondsia chinensis
Sed0010916 Sechium edule
Sed0015805 Sechium edule
Sed0023757 Sechium edule
Solyc06g062765.1 Solanum lycopersicum
Solyc12g008950.2 Solanum lycopersicum
Sopen06g022220 Solanum pennellii
Sopen12g003880 Solanum pennellii
Sp1g15630 Schrenkiella parvula
Sp5g27750 Schrenkiella parvula
Sp6g18700 Schrenkiella parvula
TAR362G1092 Trochodendron aralioides
TAR375G0996 Trochodendron aralioides
TAR624G0020 Trochodendron aralioides
TAR624G1148 Trochodendron aralioides
THA.LOC104813494 Tarenaya hassleriana
THA.LOC109116473 Tarenaya hassleriana
Thecc.06G114200 Theobroma cacao
Thecc.09G086100 Theobroma cacao
Thhalv10014757m.g Eutrema salsugineum
Thhalv10019375m.g Eutrema salsugineum
TPR.G13426 Trifolium pratense
TPR.G27679 Trifolium pratense
TWI32G0644 Tripterygium wilfordii
TWI63G0468 Tripterygium wilfordii
TWI79G0340 Tripterygium wilfordii
unitig_26.g9174 Utricularia gibba
vmacro17137 Vaccinium macrocarpon
vmacro23045 Vaccinium macrocarpon
VMungo0720G2789 Vigna mungo
Zm00001eb310990 Zea mays

User provided reference genes

Program Settings