Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
Actinidia08450 Actinidia chinensis
Actinidia19154 Actinidia chinensis
Ah.08g213660 Amaranthus hybridus
Aqoxy102s012 Aquilegia oxysepala
Aqoxy2G03515 Aquilegia oxysepala
Aqoxy5G01727 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2WY12S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.35XI12 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A8RCAK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VID2UW Arachis hypogaea
ATR0661G139 Amborella trichopoda
ATR0733G046 Amborella trichopoda
Atru.chr3.495 Acer truncatum
Atru.chr4.2285 Acer truncatum
AUR62008808 Chenopodium quinoa
AUR62008809 Chenopodium quinoa
AUR62025429 Chenopodium quinoa
AUR62025430 Chenopodium quinoa
AUR62025432 Chenopodium quinoa
CAN.G626.4 Capsicum annuum
CAN.G93.19 Capsicum annuum
CANSAT01G0562 Cannabis sativa
CANSAT78G0865 Cannabis sativa
Ca_22247_v3 Cicer arietinum L.
Ca_24823_v3 Cicer arietinum L.
Ca_26325_v3 Cicer arietinum L.
Cc00_g20680 Coffea canephora
Cc07_g05230 Coffea canephora
CDE04G3436 Ceratophyllum demersum
Cfa005535 Carpinus fangiana
Cfa008400 Carpinus fangiana
Ciclev10004551m.g Citrus clementina
Ciclev10027414m.g Citrus clementina
CiPaw.01G192400 Carya illinoinensis
CiPaw.06G148400 Carya illinoinensis
ClCG01G016250 Citrullus lanatus
ClCG02G012880 Citrullus lanatus
ClCG05G004700 Citrullus lanatus
COL.COLO4_15766 Corchorus olitorius
COL.COLO4_22153 Corchorus olitorius
Cpa.g.sc15.133 Carica papaya
CsaV3_2G016960 Cucumis sativus L.
CsaV3_3G012700 Cucumis sativus L.
CsaV3_6G042540 Cucumis sativus L.
CSS0010297 Camellia sinensis var. sinensis
CSS0021169 Camellia sinensis var. sinensis
CSS0031163 Camellia sinensis var. sinensis
DCAR_002357 Daucus carota
DCAR_007516 Daucus carota
DCAR_010965 Daucus carota
DCAR_030708 Daucus carota
Dinv14074 Davidia involucrata
Dinv26791 Davidia involucrata
Dinv44611 Davidia involucrata
Duzib151G1111 Durio zibethinus
Duzib187G0141 Durio zibethinus
ECA238G4489 Erigeron canadensis
ECA240G1015 Erigeron canadensis
EL10Ac7g17698 Beta vulgaris
Eucgr.H01926 Eucalyptus grandis
Eucgr.H03181 Eucalyptus grandis
Eucgr.I02484 Eucalyptus grandis
FAN12G1174 Fragaria x ananassa
FAN17G2834 Fragaria x ananassa
FAN22G1499 Fragaria x ananassa
FAN23G2134 Fragaria x ananassa
FAN26G1212 Fragaria x ananassa
FAN28G2213 Fragaria x ananassa
FvH4_1g14270 Fragaria vesca
FvH4_4g02221 Fragaria vesca
Glyma.01G179100 Glycine max
Glyma.02G000400 Glycine max
Glyma.11G063100 Glycine max
Gohir.A09G222000 Gossypium hirsutum
Gohir.A10G118660 Gossypium hirsutum
Gohir.A11G044800 Gossypium hirsutum
Gohir.D09G224100 Gossypium hirsutum
Gohir.D10G147500 Gossypium hirsutum
Gohir.D11G048300 Gossypium hirsutum
Gorai.006G245600 Gossypium raimondii
Gorai.007G051800 Gossypium raimondii
Gorai.011G164600 Gossypium raimondii
GSVIVG01018093001 Vitis vinifera
GSVIVG01019039001 Vitis vinifera
HanXRQChr03g0092501 Helianthus annuus
HanXRQChr04g0128071 Helianthus annuus
HanXRQChr13g0424591 Helianthus annuus
Haze_01638 Corylus avellana
Haze_11269 Corylus avellana
Hma1.2p1_0652F.1_g196000 Hydrangea macrophylla
Hma1.2p1_1528F.1_g289100 Hydrangea macrophylla
Hma1.2p1_2099F.1_g313990 Hydrangea macrophylla
HPP92_014519 Vanilla planifolia
Hund05492 Selenicereus undatus
Lalb_Chr03g0037921 Lupinus albus
Lalb_Chr09g0322721 Lupinus albus
Lj2g0020318 Lotus japonicus
Lj3A719T119 Lonicera japonica
Lj4g0023287 Lotus japonicus
Lj6A653G77 Lonicera japonica
Lj6g0021940 Lotus japonicus
Lj7C13T11 Lonicera japonica
Lsat_1_v5_gn_2_87340 Lactuca sativa
Lsat_1_v5_gn_3_124400 Lactuca sativa
Manes.13G134800 Manihot esculenta
Manes.15G035700 Manihot esculenta
MBI04_g35054_MAGBIO Magnolia biondii
MBI16_g10978_MAGBIO Magnolia biondii
MD02G1156500 Malus domestica
MD13G1203700 Malus domestica
MD13G1203800 Malus domestica
MD15G1270800 Malus domestica
MD16G1205900 Malus domestica
Medtr5g019040 Medicago truncatula
Medtr5g042440 Medicago truncatula
Medtr8g078300 Medicago truncatula
MELO3C006481.2 Cucumis melo
MELO3C007495.2 Cucumis melo
MELO3C020886.2 Cucumis melo
Migut.G00415 Erythranthe guttata
Migut.K00853 Erythranthe guttata
MSTRG.23815 Avicennia marina
MSTRG.4088 Avicennia marina
MSTRG.9933 Avicennia marina
Nitab4.5_0000090g0210 Nicotiana tabacum
Nitab4.5_0000525g0010 Nicotiana tabacum
Nitab4.5_0000525g0040 Nicotiana tabacum
Nitab4.5_0000525g0070 Nicotiana tabacum
Nitab4.5_0000525g0080 Nicotiana tabacum
Nitab4.5_0004203g0010 Nicotiana tabacum
Nitab4.5_0004292g0040 Nicotiana tabacum
Nn1g02547 Nelumbo nucifera
Nn3g19499 Nelumbo nucifera
Oeu043840.1 Olea europaea
Os02g0681700 Oryza sativa ssp. japonica
Os03g0233300 Oryza sativa ssp. japonica
Peaxi162Scf00019g00153 Petunia axillaris
Peaxi162Scf01416g00014 Petunia axillaris
PGR004G2440 Punica granatum
PGR102G0756 Punica granatum
PGSC0003DMG400001185 Solanum tuberosum
PGSC0003DMG400006086 Solanum tuberosum
PGSC0003DMG400006087 Solanum tuberosum
PGSC0003DMG400006088 Solanum tuberosum
Phvul.002G025500 Phaseolus vulgaris
Phvul.007G280200 Phaseolus vulgaris
Potri.005G128401 Populus trichocarpa
Potri.005G128501 Populus trichocarpa
Potri.007G032300 Populus trichocarpa
Potri.008G160501 Populus trichocarpa
Potri.008G160600 Populus trichocarpa
Potri.010G078700 Populus trichocarpa
Pp3c9_5820 Physcomitrium patens
Prupe.1G027000 Prunus persica
Prupe.7G147300 Prunus persica
Prupe.7G147400 Prunus persica
Psat2g162600 Pisum sativum
Psat4g090800 Pisum sativum
Psat6g102960 Pisum sativum
PSO170G3871 Papaver somniferum
PSO210G5248 Papaver somniferum
PSO238G0035 Papaver somniferum
QL06p015040 Quercus lobata
QL06p044629 Quercus lobata
RcHm_v2.0_Chr2g0102941 Rosa chinensis
RcHm_v2.0_Chr4g0389541 Rosa chinensis
Rhsim02G0032400 Rhododendron simsii
Sabra07G0028100 Salix brachista
Sabra08G0122400 Salix brachista
Sabra10G0064600 Salix brachista
Sabra10G0064700 Salix brachista
SalBow1G1676 Salvia bowleyana
SalBow1G5898 Salvia bowleyana
SalBow2G2098 Salvia bowleyana
Sc19g0003870 Simmondsia chinensis
Sc19g0003880 Simmondsia chinensis
Sc19g0003890 Simmondsia chinensis
Sed0003579 Sechium edule
Sed0011890 Sechium edule
Sed0013974 Sechium edule
SEGI_01760 Sequoiadendron giganteum
SEGI_04948 Sequoiadendron giganteum
SEGI_06251 Sequoiadendron giganteum
SEGI_11114 Sequoiadendron giganteum
SEGI_18293 Sequoiadendron giganteum
SEGI_28407 Sequoiadendron giganteum
SEGI_29430 Sequoiadendron giganteum
SGA_v2.0_scaffold101G29773 Striga asiatica
SHI00572 Sapria himalayana
SMO143G0296 Selaginella moellendorffii
Solyc02g065520.1 Solanum lycopersicum
Solyc09g083200.4 Solanum lycopersicum
Solyc09g083210.3 Solanum lycopersicum
Solyc10g045610.1 Solanum lycopersicum
Sopen02g015720 Solanum pennellii
Sopen09g032120 Solanum pennellii
Sopen09g032130 Solanum pennellii
TAR362G1029 Trochodendron aralioides
TAR376G0295 Trochodendron aralioides
TAR628G1589 Trochodendron aralioides
Thecc.01G043200 Theobroma cacao
Thecc.04G243700 Theobroma cacao
TPR.G22481 Trifolium pratense
TPR.G25436 Trifolium pratense
TPR.G31554 Trifolium pratense
TPR.G34476 Trifolium pratense
TWI09G0570 Tripterygium wilfordii
TWI09G0751 Tripterygium wilfordii
vmacro15400 Vaccinium macrocarpon
VMungo0720G0757 Vigna mungo
VMungo1215G3439 Vigna mungo
Zm00001eb009380 Zea mays
Zm00001eb187300 Zea mays
Zm00001eb250700 Zea mays
Zm00001eb399560 Zea mays

User provided reference genes

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