Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A10p15630 Brassica napus
Aa31LG11G410 Aethionema arabicum
Aa31LG1G23030 Aethionema arabicum
Actinidia05361 Actinidia chinensis
Actinidia11576 Actinidia chinensis
Actinidia20741 Actinidia chinensis
Actinidia23884 Actinidia chinensis
Actinidia34457 Actinidia chinensis
Ah.08g221410 Amaranthus hybridus
AL6G10750 Arabidopsis lyrata
AL8G34900 Arabidopsis lyrata
Aqoxy4G02538 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.142K7L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.71KX3G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8UNH89 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W084UE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XHL4C7 Arachis hypogaea
AT5G01370 Arabidopsis thaliana
AT5G58630 Arabidopsis thaliana
ATR0681G144 Amborella trichopoda
Atru.chr3.4198 Acer truncatum
Atru.chr8.2256 Acer truncatum
AUR62001632 Chenopodium quinoa
AUR62020147 Chenopodium quinoa
AUR62030496 Chenopodium quinoa
AUR62030799 Chenopodium quinoa
BcaC04g19824 Brassica carinata
BcaC09g48271 Brassica carinata
BolC1t05169H Brassica oleracea
BolC2t06018H Brassica oleracea
BolC9t57921H Brassica oleracea
BraA02t04692Z Brassica rapa
BraA10t43670Z Brassica rapa
C01p52290 Brassica napus
C02p00200 Brassica napus
C09p50710 Brassica napus
CANSAT54G2733 Cannabis sativa
CARHR211750 Cardamine hirsuta
CARHR272490 Cardamine hirsuta
Carub.0006s0045 Capsella rubella
Carub.0008s1925 Capsella rubella
Ca_05609_v3 Cicer arietinum L.
Ca_14944_v3 Cicer arietinum L.
Cc01_g14320 Coffea canephora
CDE04G1884 Ceratophyllum demersum
CDE08G1412 Ceratophyllum demersum
Cfa011708 Carpinus fangiana
Cfa017195 Carpinus fangiana
Ciclev10011806m.g Citrus clementina
CiPaw.09G210300 Carya illinoinensis
CiPaw.13G076400 Carya illinoinensis
CiPaw.14G058500 Carya illinoinensis
ClCG03G000690 Citrullus lanatus
ClCG10G022200 Citrullus lanatus
COL.COLO4_14518 Corchorus olitorius
COL.COLO4_19173 Corchorus olitorius
Cpa.g.sc11.124 Carica papaya
Cpa.g.sc112.4 Carica papaya
CsaV3_1G036240 Cucumis sativus L.
CsaV3_3G033690 Cucumis sativus L.
CSS0008670 Camellia sinensis var. sinensis
CSS0008692 Camellia sinensis var. sinensis
CSS0024143 Camellia sinensis var. sinensis
CSS0025538 Camellia sinensis var. sinensis
CSS0029870 Camellia sinensis var. sinensis
CSS0031801 Camellia sinensis var. sinensis
CSS0035019 Camellia sinensis var. sinensis
DCAR_005887 Daucus carota
DCAR_024016 Daucus carota
Dinv01729 Davidia involucrata
Dinv03102 Davidia involucrata
Dinv14505 Davidia involucrata
Dinv28651 Davidia involucrata
Duzib093G1061 Durio zibethinus
Duzib128G0808 Durio zibethinus
Duzib168G1865 Durio zibethinus
Duzib170G0773 Durio zibethinus
ECA246G5081 Erigeron canadensis
EL10Ac5g12551 Beta vulgaris
EL10Ac7g16184 Beta vulgaris
Eucgr.A00522 Eucalyptus grandis
Eucgr.B02248 Eucalyptus grandis
FAN02G2870 Fragaria x ananassa
FAN09G2526 Fragaria x ananassa
FAN11G0812 Fragaria x ananassa
FAN14G0787 Fragaria x ananassa
FAN14G4204 Fragaria x ananassa
FAN16G2238 Fragaria x ananassa
FAN21G2593 Fragaria x ananassa
FAN21G2890 Fragaria x ananassa
FAN21G3554 Fragaria x ananassa
FAN25G1890 Fragaria x ananassa
FvH4_3g38760 Fragaria vesca
FvH4_6g11320 Fragaria vesca
Glyma.01G120800 Glycine max
Glyma.02G227100 Glycine max
Glyma.03G056800 Glycine max
Glyma.07G151200 Glycine max
Glyma.11G174300 Glycine max
Glyma.14G194200 Glycine max
Glyma.18G062100 Glycine max
Glyma.18G202500 Glycine max
Gohir.A04G091850 Gossypium hirsutum
Gohir.A05G087800 Gossypium hirsutum
Gohir.A09G165800 Gossypium hirsutum
Gohir.D04G131050 Gossypium hirsutum
Gohir.D05G088900 Gossypium hirsutum
Gohir.D09G161366 Gossypium hirsutum
Gorai.006G183100 Gossypium raimondii
Gorai.009G091100 Gossypium raimondii
Gorai.012G114900 Gossypium raimondii
GSVIVG01011170001 Vitis vinifera
HanXRQChr05g0135801 Helianthus annuus
Haze_21015 Corylus avellana
Haze_24339 Corylus avellana
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla
HPP92_013884 Vanilla planifolia
Hund11000 Selenicereus undatus
Hund14289 Selenicereus undatus
Hund20990 Selenicereus undatus
Hund29902 Selenicereus undatus
Lalb_Chr04g0252221 Lupinus albus
Lalb_Chr07g0193641 Lupinus albus
Lalb_Chr12g0207011 Lupinus albus
Lalb_Chr18g0050991 Lupinus albus
Lj1P136T16 Lonicera japonica
Lj3g0010607 Lotus japonicus
Lj6g0007419 Lotus japonicus
Lj9C374G8 Lonicera japonica
LjContig00155g0026227 Lotus japonicus
Lsat_1_v5_gn_5_149441 Lactuca sativa
Lsat_1_v5_gn_8_70880 Lactuca sativa
Manes.02G118700 Manihot esculenta
Manes.09G107700 Manihot esculenta
MBI03_g31834_MAGBIO Magnolia biondii
MBI03_g32367_MAGBIO Magnolia biondii
MD03G1068300 Malus domestica
MD04G1154900 Malus domestica
MD11G1072700 Malus domestica
MD12G1168500 Malus domestica
Medtr3g464300 Medicago truncatula
Medtr4g015650 Medicago truncatula
Medtr5g071090 Medicago truncatula
MELO3C009159.2 Cucumis melo
MELO3C020542.2 Cucumis melo
Migut.L02021 Erythranthe guttata
MSTRG.12680 Avicennia marina
MSTRG.26816 Avicennia marina
Nitab4.5_0000261g0020 Nicotiana tabacum
Nitab4.5_0001884g0040 Nicotiana tabacum
Nitab4.5_0002020g0040 Nicotiana tabacum
Nitab4.5_0008578g0030 Nicotiana tabacum
Nn1g03201 Nelumbo nucifera
Nn2g10861 Nelumbo nucifera
Nn2g13146 Nelumbo nucifera
Oeu005176.1 Olea europaea
Oeu054393.1 Olea europaea
Peaxi162Scf00170g00213 Petunia axillaris
Peaxi162Scf79720g00003 Petunia axillaris
PGR031G0398 Punica granatum
PGR102G0699 Punica granatum
PGSC0003DMG400030244 Solanum tuberosum
Phvul.008G098200 Phaseolus vulgaris
Phvul.008G260800 Phaseolus vulgaris
Phvul.010G076500 Phaseolus vulgaris
Potri.001G252604 Populus trichocarpa
Potri.009G046900 Populus trichocarpa
Potri.016G117400 Populus trichocarpa
Prupe.6G056200 Prunus persica
Prupe.6G278700 Prunus persica
Psat2g057960 Pisum sativum
Psat5g158000 Pisum sativum
Psat7g245680 Pisum sativum
PSO339G6116 Papaver somniferum
PSO384G5133 Papaver somniferum
QL01p038574 Quercus lobata
QL07p035285 Quercus lobata
RcHm_v2.0_Chr3g0462881 Rosa chinensis
RcHm_v2.0_Chr5g0069911 Rosa chinensis
Rhsim01G0236900 Rhododendron simsii
Rhsim13G0068300 Rhododendron simsii
Sabra09G0034300 Salix brachista
Sabra16G0113500 Salix brachista
SalBow2G1798 Salvia bowleyana
SalBow4G2563 Salvia bowleyana
Sc07g0006660 Simmondsia chinensis
Sed0002259 Sechium edule
Sed0008005 Sechium edule
Sed0010018 Sechium edule
SGA_v2.0_scaffold110G31210 Striga asiatica
SGA_v2.0_scaffold120G32902 Striga asiatica
Solyc09g005570.3 Solanum lycopersicum
Sopen09g001480 Solanum pennellii
Sp6g20330 Schrenkiella parvula
Sp6g40680 Schrenkiella parvula
TAR369G0146 Trochodendron aralioides
TAR623G0590 Trochodendron aralioides
TAR636G2889 Trochodendron aralioides
THA.LOC104810708 Tarenaya hassleriana
THA.LOC104816197 Tarenaya hassleriana
Thecc.05G014300 Theobroma cacao
Thecc.09G299900 Theobroma cacao
Thhalv10015324m.g Eutrema salsugineum
Thhalv10016075m.g Eutrema salsugineum
TPR.G13333 Trifolium pratense
TPR.G15189 Trifolium pratense
TPR.G34575 Trifolium pratense
TWI31G1278 Tripterygium wilfordii
TWI53G1918 Tripterygium wilfordii
TWI74G0063 Tripterygium wilfordii
unitig_26.g10213 Utricularia gibba
unitig_8.g3686 Utricularia gibba
VMungo0331G0804 Vigna mungo
VMungo0647G1535 Vigna mungo
VMungo1383G2513 Vigna mungo

User provided reference genes

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