Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p19610 Brassica napus
A03p57900 Brassica napus
Aa31LG2G22060 Aethionema arabicum
Aa31LG8G17660 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_340.414 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.555 Anthoceros agrestis
Actinidia05140 Actinidia chinensis
Actinidia30483 Actinidia chinensis
Actinidia39301 Actinidia chinensis
AL3G53990 Arabidopsis lyrata
AL7G24410 Arabidopsis lyrata
Aqoxy1G02703 Aquilegia oxysepala
Aqoxy4G01374 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.A9FWXT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F3JNCP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NLPK0N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SAD4HJ Arachis hypogaea
AT2G20825 Arabidopsis thaliana
AT4G28190 Arabidopsis thaliana
ATR0693G042 Amborella trichopoda
Atru.chr2.2835 Acer truncatum
Atru.chr6.3050 Acer truncatum
BcaB03g16872 Brassica carinata
BcaC06g32639 Brassica carinata
BcaC06g36772 Brassica carinata
BcaC09g50506 Brassica carinata
BcaNung01589 Brassica carinata
BolC1t02414H Brassica oleracea
BolC7t40461H Brassica oleracea
BolC7t46079H Brassica oleracea
BraA01t01895Z Brassica rapa
BraA03t14854Z Brassica rapa
BraA07t27786Z Brassica rapa
C01p24640 Brassica napus
C07p00100 Brassica napus
C07p56020 Brassica napus
CAN.G274.5 Capsicum annuum
CAN.G318.16 Capsicum annuum
CAN.G996.6 Capsicum annuum
CANSAT11G1650 Cannabis sativa
CANSAT64G1668 Cannabis sativa
CARHR111530 Cardamine hirsuta
CARHR235900 Cardamine hirsuta
Carub.0003s3545 Capsella rubella
Carub.0007s1257 Capsella rubella
Ca_20689_v3 Cicer arietinum L.
Cc00_g21110 Coffea canephora
Cc02_g28040 Coffea canephora
Cc05_g03010 Coffea canephora
CDE01G0782 Ceratophyllum demersum
CDE12G0250 Ceratophyllum demersum
Cfa014554 Carpinus fangiana
Ciclev10010695m.g Citrus clementina
Ciclev10016505m.g Citrus clementina
CiPaw.03G170900 Carya illinoinensis
CiPaw.04G123300 Carya illinoinensis
CiPaw.11G175200 Carya illinoinensis
ClCG02G001270 Citrullus lanatus
ClCG11G018410 Citrullus lanatus
COL.COLO4_09468 Corchorus olitorius
COL.COLO4_13700 Corchorus olitorius
Cpa.g.c29435 Carica papaya
Cpa.g.c34976 Carica papaya
Cpa.g.c38165 Carica papaya
Cpa.g.sc0.170 Carica papaya
Cpa.g.sc121.15 Carica papaya
Cpa.g.sc1630.1 Carica papaya
Cpa.g.sc34.111 Carica papaya
Cpa.g.sc80.103 Carica papaya
Cpa.g.sc80.104 Carica papaya
CsaV3_3G044410 Cucumis sativus L.
CsaV3_7G004160 Cucumis sativus L.
CSS0026767 Camellia sinensis var. sinensis
CSS0037606 Camellia sinensis var. sinensis
DCAR_009734 Daucus carota
DCAR_012987 Daucus carota
DCAR_021229 Daucus carota
Dinv15472 Davidia involucrata
Dinv23696 Davidia involucrata
Duzib052G0602 Durio zibethinus
Duzib132G0253 Durio zibethinus
Duzib213G0790 Durio zibethinus
Duzib213G1065 Durio zibethinus
Duzib248G1539 Durio zibethinus
Duzib268G1116 Durio zibethinus
ECA234G1210 Erigeron canadensis
EL10Ac4g08081 Beta vulgaris
Eucgr.F03351 Eucalyptus grandis
Eucgr.K00939 Eucalyptus grandis
FAN02G0547 Fragaria x ananassa
FAN05G5001 Fragaria x ananassa
FAN09G4592 Fragaria x ananassa
FAN14G1254 Fragaria x ananassa
FvH4_6g44900 Fragaria vesca
Glyma.06G250300 Glycine max
Glyma.06G250400 Glycine max
Glyma.06G250500 Glycine max
Glyma.06G250901 Glycine max
Glyma.06G252100 Glycine max
Glyma.06G297100 Glycine max
Glyma.12G108000 Glycine max
Gohir.A03G159200 Gossypium hirsutum
Gohir.A04G026700 Gossypium hirsutum
Gohir.A04G026800 Gossypium hirsutum
Gohir.A12G137100 Gossypium hirsutum
Gohir.D02G182400 Gossypium hirsutum
Gohir.D05G361500 Gossypium hirsutum
Gohir.D12G141000 Gossypium hirsutum
Gorai.005G204800 Gossypium raimondii
Gorai.008G152400 Gossypium raimondii
Gorai.009G431300 Gossypium raimondii
GSVIVG01030570001 Vitis vinifera
HanXRQChr05g0140461 Helianthus annuus
HanXRQChr05g0156361 Helianthus annuus
HanXRQChr05g0156431 Helianthus annuus
HanXRQChr05g0157461 Helianthus annuus
HanXRQChr09g0258011 Helianthus annuus
HanXRQChr10g0297091 Helianthus annuus
HanXRQChr17g0542471 Helianthus annuus
Haze_13102 Corylus avellana
HPP92_001810 Vanilla planifolia
Hund08038 Selenicereus undatus
Lalb_Chr01g0005401 Lupinus albus
Lalb_Chr03g0029231 Lupinus albus
Lalb_Chr19g0134441 Lupinus albus
Lalb_Chr22g0356401 Lupinus albus
Lj1A734T67 Lonicera japonica
Lj3g0000198 Lotus japonicus
Lj3g0001486 Lotus japonicus
Lj3g0007977 Lotus japonicus
Lj3g0016336 Lotus japonicus
Lj8A116T74 Lonicera japonica
Lj8A159T101 Lonicera japonica
Lsat_1_v5_gn_3_39261 Lactuca sativa
Lsat_1_v5_gn_4_68920 Lactuca sativa
Lsat_1_v5_gn_5_6961 Lactuca sativa
Manes.12G079700 Manihot esculenta
Manes.13G150600 Manihot esculenta
Manes.15G083700 Manihot esculenta
MBI02_g10552_MAGBIO Magnolia biondii
MD03G1220200 Malus domestica
MD09G1092100 Malus domestica
MD17G1082000 Malus domestica
Medtr0072s0040 Medicago truncatula
Medtr2g090080 Medicago truncatula
MELO3C018202.2 Cucumis melo
MELO3C018761.2 Cucumis melo
Migut.B00917 Erythranthe guttata
Migut.B00918 Erythranthe guttata
Migut.B00919 Erythranthe guttata
Migut.E00987 Erythranthe guttata
Migut.E00988 Erythranthe guttata
Migut.E00991 Erythranthe guttata
Migut.E00993 Erythranthe guttata
Migut.E01268 Erythranthe guttata
Nitab4.5_0000297g0080 Nicotiana tabacum
Nitab4.5_0002565g0070 Nicotiana tabacum
Nitab4.5_0003018g0050 Nicotiana tabacum
Nitab4.5_0007732g0030 Nicotiana tabacum
Nitab4.5_0009520g0010 Nicotiana tabacum
Nn1g03934 Nelumbo nucifera
Nn1g06722 Nelumbo nucifera
Oeu010932.1 Olea europaea
Oeu041295.1 Olea europaea
Oeu060538.1 Olea europaea
Os01g0780800 Oryza sativa ssp. japonica
Os05g0502700 Oryza sativa ssp. japonica
Peaxi162Scf00007g02859 Petunia axillaris
Peaxi162Scf00485g00037 Petunia axillaris
Peaxi162Scf01111g00019 Petunia axillaris
PGR142G4146 Punica granatum
PGSC0003DMG400018322 Solanum tuberosum
PGSC0003DMG400043421 Solanum tuberosum
Phvul.011G112300 Phaseolus vulgaris
Potri.013G145400 Populus trichocarpa
Potri.019G104500 Populus trichocarpa
Prupe.3G232900 Prunus persica
Prupe.4G188700 Prunus persica
Psat5g270120 Pisum sativum
Psat7g199800 Pisum sativum
PSO210G1245 Papaver somniferum
PSO541G3829 Papaver somniferum
PSO675G2902 Papaver somniferum
PSO832G1320 Papaver somniferum
QL10p048471 Quercus lobata
RcHm_v2.0_Chr2g0162081 Rosa chinensis
RcHm_v2.0_Chr5g0035151 Rosa chinensis
Rhsim04G0066000 Rhododendron simsii
Rhsim06G0193200 Rhododendron simsii
Sabra13G0117100 Salix brachista
Sabra19G0114900 Salix brachista
Sc06g0009200 Simmondsia chinensis
Sed0013833 Sechium edule
Sed0018022 Sechium edule
Sed0025006 Sechium edule
SEGI_02317 Sequoiadendron giganteum
SGA_v2.0_scaffold34G13712 Striga asiatica
SHI10467 Sapria himalayana
Solyc07g054450.4 Solanum lycopersicum
Solyc12g010370.1 Solanum lycopersicum
Solyc12g010755.1 Solanum lycopersicum
Sopen07g028390 Solanum pennellii
Sopen12g005240 Solanum pennellii
Sp3g34060 Schrenkiella parvula
Sp7g26140 Schrenkiella parvula
TAR597G0004 Trochodendron aralioides
TAR624G0452 Trochodendron aralioides
TAR626G0871 Trochodendron aralioides
THA.LOC104804063 Tarenaya hassleriana
THA.LOC104814495 Tarenaya hassleriana
Thecc.02G173400 Theobroma cacao
Thecc.07G073100 Theobroma cacao
Thhalv10002089m.g Eutrema salsugineum
Thhalv10026038m.g Eutrema salsugineum
TPR.G21653 Trifolium pratense
TPR.G27079 Trifolium pratense
TWI18G0096 Tripterygium wilfordii
TWI38G0298 Tripterygium wilfordii
TWI38G0608 Tripterygium wilfordii
TWI38G1430 Tripterygium wilfordii
TWI75G1131 Tripterygium wilfordii
vmacro09269 Vaccinium macrocarpon
vmacro11816 Vaccinium macrocarpon
VMungo1127G1304 Vigna mungo
Zm00001eb151460 Zea mays
Zm00001eb369850 Zea mays

User provided reference genes

Program Settings