Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p09540 Brassica napus
A03p13850 Brassica napus
A09p06230 Brassica napus
Aa31LG1G29190 Aethionema arabicum
Aa31LG3G11630 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.565 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.1990 Anthoceros agrestis
Actinidia03271 Actinidia chinensis
Actinidia30405 Actinidia chinensis
Ah.04g166570 Amaranthus hybridus
Ah.06g181430 Amaranthus hybridus
Ah.06g195390 Amaranthus hybridus
AL4G47420 Arabidopsis lyrata
AL8G31290 Arabidopsis lyrata
Aqoxy1G01883 Aquilegia oxysepala
Aqoxy4G02512 Aquilegia oxysepala
Aqoxy5G00701 Aquilegia oxysepala
Aqoxy7G01211 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3ASH47 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UMJX34 Arachis hypogaea
AT2G47840 Arabidopsis thaliana
AT5G55710 Arabidopsis thaliana
ATR0691G164 Amborella trichopoda
ATR0743G193 Amborella trichopoda
Atru.chr12.1728 Acer truncatum
AUR62000294 Chenopodium quinoa
AUR62006640 Chenopodium quinoa
BcaB04g19795 Brassica carinata
BcaC01g06389 Brassica carinata
BcaC04g23579 Brassica carinata
BcaNung05607 Brassica carinata
BcaNung05609 Brassica carinata
BcaNung05610 Brassica carinata
BcaNung06285 Brassica carinata
BolC3t14053H Brassica oleracea
BolC9t53608H Brassica oleracea
BraA02t06018Z Brassica rapa
BraA03t10688Z Brassica rapa
BraA09t36267Z Brassica rapa
C02p15880 Brassica napus
C03p16300 Brassica napus
C09p06880 Brassica napus
CAN.G1177.4 Capsicum annuum
CAN.G67.12 Capsicum annuum
CANSAT11G1765 Cannabis sativa
CANSAT54G1119 Cannabis sativa
CARHR143240 Cardamine hirsuta
CARHR269030 Cardamine hirsuta
Carub.0007s2570 Capsella rubella
Carub.0008s1608 Capsella rubella
Ca_06395_v3 Cicer arietinum L.
Ca_08001_v3 Cicer arietinum L.
CBR_g29823 Chara braunii
CBR_g29825 Chara braunii
CBR_g39575 Chara braunii
Cc05_g14930 Coffea canephora
Cc09_g03830 Coffea canephora
Cc09_g03840 Coffea canephora
CDE02G3378 Ceratophyllum demersum
Cfa006247 Carpinus fangiana
Cfa020193 Carpinus fangiana
Ciclev10010576m.g Citrus clementina
Ciclev10012796m.g Citrus clementina
CiPaw.08G114200 Carya illinoinensis
CiPaw.11G203800 Carya illinoinensis
CiPaw.12G138100 Carya illinoinensis
ClCG03G010550 Citrullus lanatus
ClCG10G004320 Citrullus lanatus
COL.COLO4_08424 Corchorus olitorius
Cpa.g.sc12.147 Carica papaya
Cpa.g.sc123.36 Carica papaya
Cre01.g039150 Chlamydomonas reinhardtii
Cre04.g225050 Chlamydomonas reinhardtii
CsaV3_1G044440 Cucumis sativus L.
CSS0025439 Camellia sinensis var. sinensis
CSS0027776 Camellia sinensis var. sinensis
DCAR_002152 Daucus carota
DCAR_002153 Daucus carota
DCAR_013230 Daucus carota
Dinv29088 Davidia involucrata
Dinv40858 Davidia involucrata
Duzib170G0549 Durio zibethinus
Duzib235G0623 Durio zibethinus
ECA246G5078 Erigeron canadensis
EL10Ac4g10001 Beta vulgaris
Eucgr.F03690 Eucalyptus grandis
FAN11G3279 Fragaria x ananassa
FAN14G4502 Fragaria x ananassa
FAN16G2209 Fragaria x ananassa
FAN21G3372 Fragaria x ananassa
FAN25G0775 Fragaria x ananassa
FvH4_3g29100 Fragaria vesca
FvH4_6g00330 Fragaria vesca
Glyma.02G300300 Glycine max
Glyma.14G013700 Glycine max
Glyma.18G243800 Glycine max
Glyma.19G098000 Glycine max
Gohir.A06G198000 Gossypium hirsutum
Gohir.A13G133100 Gossypium hirsutum
Gohir.D06G205400 Gossypium hirsutum
Gohir.D13G136400 Gossypium hirsutum
Gorai.010G239700 Gossypium raimondii
Gorai.013G153000 Gossypium raimondii
GSVIVG01014683001 Vitis vinifera
HanXRQChr05g0159861 Helianthus annuus
HanXRQChr08g0233121 Helianthus annuus
HanXRQChr15g0478551 Helianthus annuus
Haze_04587 Corylus avellana
Haze_09822 Corylus avellana
Hma1.2p1_0831F.1_g225460 Hydrangea macrophylla
Hma1.2p1_1559F.1_g290610 Hydrangea macrophylla
HPP92_019179 Vanilla planifolia
Lalb_Chr01g0020571 Lupinus albus
Lalb_Chr10g0107421 Lupinus albus
Lj1A579T44 Lonicera japonica
Lj1g0026296 Lotus japonicus
Lj1P889T51 Lonicera japonica
LjContig00081g0015147 Lotus japonicus
Lsat_1_v5_gn_3_46200 Lactuca sativa
Lsat_1_v5_gn_5_1780 Lactuca sativa
Manes.12G003600 Manihot esculenta
Manes.15G059900 Manihot esculenta
Mapoly0035s0116 Marchantia polymorpha
MBI07_g02903_MAGBIO Magnolia biondii
MBI14_g34642_MAGBIO Magnolia biondii
MCO07G589 Micromonas commoda
MCO14G570 Micromonas commoda
MD03G1179100 Malus domestica
MD04G1246700 Malus domestica
MD11G1198300 Malus domestica
MD12G1263500 Malus domestica
Medtr5g095770 Medicago truncatula
Medtr7g080300 Medicago truncatula
MELO3C010044.2 Cucumis melo
MELO3C014106.2 Cucumis melo
Migut.F02108 Erythranthe guttata
Migut.M01654 Erythranthe guttata
MSTRG.27401 Avicennia marina
MSTRG.6996 Avicennia marina
Nitab4.5_0000163g0190 Nicotiana tabacum
Nitab4.5_0004390g0050 Nicotiana tabacum
Nitab4.5_0005524g0010 Nicotiana tabacum
Nitab4.5_0009796g0030 Nicotiana tabacum
Nn1g03176 Nelumbo nucifera
Nn1g07506 Nelumbo nucifera
Nn2g14744 Nelumbo nucifera
Oeu010164.1 Olea europaea
Oeu022590.1 Olea europaea
Oeu046932.1 Olea europaea
Os02g0726600 Oryza sativa ssp. japonica
Peaxi162Scf00955g00005 Petunia axillaris
PGR031G2412 Punica granatum
PGR119G1410 Punica granatum
PGSC0003DMG400016230 Solanum tuberosum
PGSC0003DMG400039047 Solanum tuberosum
Phvul.008G052800 Phaseolus vulgaris
Phvul.008G279000 Phaseolus vulgaris
Potri.004G191700 Populus trichocarpa
Potri.013G084900 Populus trichocarpa
Pp3c13_10120 Physcomitrium patens
Pp3c4_23560 Physcomitrium patens
PRCOL_00004877 Prasinoderma coloniale
PRCOL_00005584 Prasinoderma coloniale
Prupe.4G244200 Prunus persica
Prupe.6G362900 Prunus persica
Psat2g007440 Pisum sativum
Psat3g102440 Pisum sativum
PSO017G0903 Papaver somniferum
PSO017G4265 Papaver somniferum
PSO063G1226 Papaver somniferum
PSO170G1044 Papaver somniferum
PSO170G2180 Papaver somniferum
PSO339G3259 Papaver somniferum
PSO675G1705 Papaver somniferum
PSO782G5342 Papaver somniferum
PSO801G0663 Papaver somniferum
QL04p012274 Quercus lobata
QL08p004171 Quercus lobata
QL93p2000_0033 Quercus lobata
RcHm_v2.0_Chr3g0447631 Rosa chinensis
RcHm_v2.0_Chr5g0051381 Rosa chinensis
RcHm_v2.0_Chr5g0053421 Rosa chinensis
RcHm_v2.0_Chr5g0053431 Rosa chinensis
Rhsim05G0167300 Rhododendron simsii
Rhsim05G0167500 Rhododendron simsii
Rhsim06G0229500 Rhododendron simsii
Sabra04G0130100 Salix brachista
Sabra13G0078500 Salix brachista
SalBow1G5506 Salvia bowleyana
SalBow1G8551 Salvia bowleyana
SalBow8G0817 Salvia bowleyana
Sc09g0001400 Simmondsia chinensis
Sc16g0008080 Simmondsia chinensis
Sed0000910 Sechium edule
Sed0014175 Sechium edule
SEGI_03913 Sequoiadendron giganteum
SEGI_08645 Sequoiadendron giganteum
SEGI_32258 Sequoiadendron giganteum
SEGI_41520 Sequoiadendron giganteum
SGA_v2.0_scaffold171G38874 Striga asiatica
SGA_v2.0_scaffold48G18002 Striga asiatica
SMO116G0041 Selaginella moellendorffii
Solyc11g008980.1 Solanum lycopersicum
Solyc12g015680.1 Solanum lycopersicum
Sopen11g004760 Solanum pennellii
Sopen12g007600 Solanum pennellii
Sp2g22270 Schrenkiella parvula
Sp6g17620 Schrenkiella parvula
TAR362G0628 Trochodendron aralioides
TAR629G2064 Trochodendron aralioides
THA.LOC104811662 Tarenaya hassleriana
THA.LOC104817515 Tarenaya hassleriana
Thecc.05G189400 Theobroma cacao
Thecc.07G014000 Theobroma cacao
Thhalv10004927m.g Eutrema salsugineum
Thhalv10014662m.g Eutrema salsugineum
TPR.G33860 Trifolium pratense
TPR.G8595 Trifolium pratense
TWI36G0728 Tripterygium wilfordii
TWI36G1637 Tripterygium wilfordii
TWI38G1348 Tripterygium wilfordii
TWI39G0597 Tripterygium wilfordii
unitig_46.g18567 Utricularia gibba
unitig_746.g26708 Utricularia gibba
vmacro11587 Vaccinium macrocarpon
VMungo0647G1428 Vigna mungo
VMungo1383G3619 Vigna mungo

User provided reference genes

Program Settings