Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p19370 Brassica napus
A07p40280 Brassica napus
Aa31LG4G4730 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2675 Anthoceros agrestis
Actinidia19039 Actinidia chinensis
Actinidia35001 Actinidia chinensis
Ah.02g113580 Amaranthus hybridus
AL2G34350 Arabidopsis lyrata
Aqoxy2G00461 Aquilegia oxysepala
Aqoxy3G03403 Aquilegia oxysepala
Aqoxy3G03406 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0UK906 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.73WXPF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AZU29N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J4UDZG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZBZ06L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZU6JE3 Arachis hypogaea
AT1G74470 Arabidopsis thaliana
ATR0564G441 Amborella trichopoda
Atru.chr3.2914 Acer truncatum
Atru.chr9.246 Acer truncatum
AUR62001603 Chenopodium quinoa
AUR62008423 Chenopodium quinoa
AUR62020176 Chenopodium quinoa
AUR62021672 Chenopodium quinoa
BcaB05g24854 Brassica carinata
BcaC03g15506 Brassica carinata
BcaC08g46879 Brassica carinata
BcaC08g46994 Brassica carinata
BolC2t09222H Brassica oleracea
BolC6t39895H Brassica oleracea
BraA02t06976Z Brassica rapa
BraA07t31571Z Brassica rapa
C02p31880 Brassica napus
C06p48640 Brassica napus
CAN.G410.35 Capsicum annuum
CAN.G837.25 Capsicum annuum
CANSAT54G2689 Cannabis sativa
CANSAT80G2680 Cannabis sativa
CARHR067750 Cardamine hirsuta
CARHR218020 Cardamine hirsuta
CARHR251040 Cardamine hirsuta
Carub.0002s2127 Capsella rubella
Ca_21818_v3 Cicer arietinum L.
CBR_g66757 Chara braunii
Cc02_g30160 Coffea canephora
Cc04_g16560 Coffea canephora
CDE04G1563 Ceratophyllum demersum
CDE08G0593 Ceratophyllum demersum
Cfa010249 Carpinus fangiana
Cfa018936 Carpinus fangiana
Ciclev10015206m.g Citrus clementina
Ciclev10020061m.g Citrus clementina
CiPaw.01G229900 Carya illinoinensis
CiPaw.11G045100 Carya illinoinensis
ClCG02G024280 Citrullus lanatus
ClCG06G016180 Citrullus lanatus
COL.COLO4_08862 Corchorus olitorius
COL.COLO4_08864 Corchorus olitorius
COL.COLO4_25290 Corchorus olitorius
Cpa.g.sc193.12 Carica papaya
Cpa.g.sc423.4 Carica papaya
Cre01.g050950 Chlamydomonas reinhardtii
CsaV3_1G002370 Cucumis sativus L.
CsaV3_4G017400 Cucumis sativus L.
CSS0028092 Camellia sinensis var. sinensis
CSS0036336 Camellia sinensis var. sinensis
CSS0045903 Camellia sinensis var. sinensis
CSS0047896 Camellia sinensis var. sinensis
DCAR_019413 Daucus carota
DCAR_026055 Daucus carota
Dinv10636 Davidia involucrata
Dinv19968 Davidia involucrata
Dinv32104 Davidia involucrata
Duzib084G0426 Durio zibethinus
Duzib168G1260 Durio zibethinus
Duzib205G0962 Durio zibethinus
ECA232G0781 Erigeron canadensis
ECA246G3175 Erigeron canadensis
EL10Ac5g11026 Beta vulgaris
EL10Ac7g16232 Beta vulgaris
Eucgr.B00512 Eucalyptus grandis
Eucgr.B03789 Eucalyptus grandis
FAN01G1110 Fragaria x ananassa
FAN04G0015 Fragaria x ananassa
FAN04G2332 Fragaria x ananassa
FAN06G2459 Fragaria x ananassa
FAN06G2537 Fragaria x ananassa
FAN08G0334 Fragaria x ananassa
FAN10G1761 Fragaria x ananassa
FAN13G1773 Fragaria x ananassa
FAN18G1600 Fragaria x ananassa
FvH4_5g14870 Fragaria vesca
FvH4_7g06120 Fragaria vesca
Glyma.02G273800 Glycine max
Glyma.05G026200 Glycine max
Glyma.17G100700 Glycine max
Gohir.A03G067100 Gossypium hirsutum
Gohir.A09G105100 Gossypium hirsutum
Gohir.D03G093600 Gossypium hirsutum
Gohir.D09G101800 Gossypium hirsutum
Gorai.003G097600 Gossypium raimondii
Gorai.006G119200 Gossypium raimondii
GSVIVG01007996001 Vitis vinifera
GSVIVG01037438001 Vitis vinifera
HanXRQChr03g0082441 Helianthus annuus
HanXRQChr05g0155971 Helianthus annuus
HanXRQChr08g0236571 Helianthus annuus
HanXRQChr09g0273531 Helianthus annuus
Haze_07320 Corylus avellana
Haze_23641 Corylus avellana
Hma1.2p1_0104F.1_g049890 Hydrangea macrophylla
Hma1.2p1_0218F.1_g092520 Hydrangea macrophylla
HPP92_027579 Vanilla planifolia
HPP92_028186 Vanilla planifolia
Hund09346 Selenicereus undatus
Lalb_Chr07g0178091 Lupinus albus
Lalb_Chr10g0105891 Lupinus albus
Lalb_Chr12g0196871 Lupinus albus
Lalb_Chr13g0303201 Lupinus albus
Lj2A906G23 Lonicera japonica
Lj2P906T15 Lonicera japonica
Lj4g0013280 Lotus japonicus
Lj9P464T76 Lonicera japonica
LjContig00564g0027051 Lotus japonicus
Lsat_1_v5_gn_4_108620 Lactuca sativa
Lsat_1_v5_gn_4_108640 Lactuca sativa
Lsat_1_v5_gn_4_108700 Lactuca sativa
Lsat_1_v5_gn_4_108780 Lactuca sativa
Lsat_1_v5_gn_4_82121 Lactuca sativa
Lsat_1_v5_gn_5_19701 Lactuca sativa
Manes.14G078700 Manihot esculenta
Mapoly0116s0015 Marchantia polymorpha
MBI05_g34362_MAGBIO Magnolia biondii
MBI18_g41690_MAGBIO Magnolia biondii
MBI19_g30304_MAGBIO Magnolia biondii
MCO13G586 Micromonas commoda
MD00G1178300 Malus domestica
MD06G1193900 Malus domestica
MD14G1201100 Malus domestica
Medtr5g087700 Medicago truncatula
MELO3C014712.2 Cucumis melo
MELO3C017176.2 Cucumis melo
Migut.B01195 Erythranthe guttata
Migut.I00184 Erythranthe guttata
MSTRG.23018 Avicennia marina
Nitab4.5_0000316g0250 Nicotiana tabacum
Nitab4.5_0001128g0080 Nicotiana tabacum
Nitab4.5_0001775g0050 Nicotiana tabacum
Nitab4.5_0006000g0080 Nicotiana tabacum
Nn2g10400 Nelumbo nucifera
Nn2g11679 Nelumbo nucifera
Nn2g14535 Nelumbo nucifera
Nn5g28742 Nelumbo nucifera
Nn7g36266 Nelumbo nucifera
Oeu014601.1 Olea europaea
Oeu014602.1 Olea europaea
Oeu047009.1 Olea europaea
Os01g0265000 Oryza sativa ssp. japonica
Os02g0744900 Oryza sativa ssp. japonica
Peaxi162Scf00087g00012 Petunia axillaris
Peaxi162Scf00274g00051 Petunia axillaris
PGR083G2544 Punica granatum
PGR102G3353 Punica granatum
PGSC0003DMG400006822 Solanum tuberosum
PGSC0003DMG400019510 Solanum tuberosum
Phvul.003G189600 Phaseolus vulgaris
Phvul.008G208000 Phaseolus vulgaris
Potri.004G195800 Populus trichocarpa
Potri.009G157700 Populus trichocarpa
Potri.012G068801 Populus trichocarpa
Pp3c18_5520 Physcomitrium patens
Pp3c19_14000 Physcomitrium patens
Pp3c22_17810 Physcomitrium patens
PRCOL_00004408 Prasinoderma coloniale
Prupe.5G194300 Prunus persica
Prupe.6G153000 Prunus persica
Psat2g022920 Pisum sativum
Psat4g050200 Pisum sativum
PSO013G0072 Papaver somniferum
PSO675G3654 Papaver somniferum
PSO782G4353 Papaver somniferum
PSO832G0126 Papaver somniferum
QL01p020450 Quercus lobata
QL10p017104 Quercus lobata
RcHm_v2.0_Chr1g0333811 Rosa chinensis
RcHm_v2.0_Chr7g0181511 Rosa chinensis
Rhsim12G0156000 Rhododendron simsii
Rhsim12G0156100 Rhododendron simsii
Rhsim13G0167100 Rhododendron simsii
Sabra09G0123300 Salix brachista
Sabra12G0049000 Salix brachista
Sabra15G0087500 Salix brachista
Sabra15G0087700 Salix brachista
SalBow5G1517 Salvia bowleyana
SalBow5G3430 Salvia bowleyana
Sc04g0002680 Simmondsia chinensis
Sc06g0006190 Simmondsia chinensis
Sed0008357 Sechium edule
Sed0020269 Sechium edule
SEGI_11298 Sequoiadendron giganteum
SGA_v2.0_scaffold4G02441 Striga asiatica
SGA_v2.0_scaffold56G20013 Striga asiatica
SMO145G0167 Selaginella moellendorffii
Solyc01g088310.3 Solanum lycopersicum
Solyc03g115980.1 Solanum lycopersicum
Sopen01g035160 Solanum pennellii
Sopen03g034970 Solanum pennellii
Sp5g29650 Schrenkiella parvula
TAR374G1350 Trochodendron aralioides
TAR633G0730 Trochodendron aralioides
THA.LOC104813881 Tarenaya hassleriana
Thecc.03G089100 Theobroma cacao
Thecc.09G263600 Theobroma cacao
Thhalv10018504m.g Eutrema salsugineum
TPR.G11730 Trifolium pratense
TPR.G9248 Trifolium pratense
TWI56G0208 Tripterygium wilfordii
TWI75G0125 Tripterygium wilfordii
unitig_0.g1389 Utricularia gibba
unitig_749.g13444 Utricularia gibba
vmacro16545 Vaccinium macrocarpon
VMungo0647G0309 Vigna mungo
VMungo1215G0211 Vigna mungo
Zm00001eb128250 Zea mays
Zm00001eb254510 Zea mays
Zm00001eb309790 Zea mays
Zm00001eb309800 Zea mays

User provided reference genes

Program Settings