Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00120 Brassica napus
A01p03780 Brassica napus
A07p04490 Brassica napus
Aa31LG2G15780 Aethionema arabicum
Aa31LG6G16370 Aethionema arabicum
Aa31LG8G13850 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5562 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.874 Anthoceros agrestis
Actinidia00121 Actinidia chinensis
Actinidia00580 Actinidia chinensis
Actinidia20475 Actinidia chinensis
Actinidia20650 Actinidia chinensis
Actinidia27848 Actinidia chinensis
Ah.10g033010 Amaranthus hybridus
AL3G49160 Arabidopsis lyrata
AL7G10760 Arabidopsis lyrata
AL7G16460 Arabidopsis lyrata
Aqoxy3G02042 Aquilegia oxysepala
Aqoxy7G03423 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.12MHRI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FNS44E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q61L2V Arachis hypogaea
AT2G16570 Arabidopsis thaliana
AT4G34740 Arabidopsis thaliana
AT4G38880 Arabidopsis thaliana
ATR1120G151 Amborella trichopoda
Atru.chr5.3163 Acer truncatum
Atru.chr5.3175 Acer truncatum
Atru.chr5.3176 Acer truncatum
AUR62020780 Chenopodium quinoa
AUR62027920 Chenopodium quinoa
BcaB03g16372 Brassica carinata
BcaC06g36155 Brassica carinata
BcaNung00665 Brassica carinata
BcaNung04215 Brassica carinata
BcaNung04298 Brassica carinata
BolC1t00021H Brassica oleracea
BolC1t00397H Brassica oleracea
BolC7t41134H Brassica oleracea
BraA01t00016Z Brassica rapa
BraA01t00362Z Brassica rapa
BraA07t28240Z Brassica rapa
C01p00160 Brassica napus
C01p04060 Brassica napus
C07p07150 Brassica napus
CAN.G1329.4 Capsicum annuum
CAN.G1480.5 Capsicum annuum
CAN.G192.7 Capsicum annuum
CAN.G2.56 Capsicum annuum
CAN.G312.11 Capsicum annuum
CAN.G545.1 Capsicum annuum
CAN.G74.37 Capsicum annuum
CANSAT11G0603 Cannabis sativa
CARHR106760 Cardamine hirsuta
CARHR243040 Cardamine hirsuta
Carub.0003s3032 Capsella rubella
Carub.0007s0073 Capsella rubella
Carub.0007s0555 Capsella rubella
Ca_09578_v3 Cicer arietinum L.
Ca_15329_v3 Cicer arietinum L.
CBR_g658 Chara braunii
Cc02_g16810 Coffea canephora
CDE02G0192 Ceratophyllum demersum
CDE06G1747 Ceratophyllum demersum
Cfa005122 Carpinus fangiana
Cfa026961 Carpinus fangiana
Ciclev10028076m.g Citrus clementina
Ciclev10029791m.g Citrus clementina
Ciclev10030299m.g Citrus clementina
CiPaw.05G074400 Carya illinoinensis
CiPaw.06G127300 Carya illinoinensis
ClCG11G003800 Citrullus lanatus
COL.COLO4_10616 Corchorus olitorius
Cpa.g.sc150.4 Carica papaya
Cre05.g234638 Chlamydomonas reinhardtii
CsaV3_2G015340 Cucumis sativus L.
CSS0013842 Camellia sinensis var. sinensis
CSS0024963 Camellia sinensis var. sinensis
CSS0026508 Camellia sinensis var. sinensis
CSS0045438 Camellia sinensis var. sinensis
DCAR_022789 Daucus carota
DCAR_022925 Daucus carota
Dinv23445 Davidia involucrata
Dinv41989 Davidia involucrata
Duzib052G0360 Durio zibethinus
Duzib248G0188 Durio zibethinus
ECA233G3828 Erigeron canadensis
EL10Ac2g03562 Beta vulgaris
Eucgr.G01741 Eucalyptus grandis
FAN01G2100 Fragaria x ananassa
FAN03G0003 Fragaria x ananassa
FAN10G1998 Fragaria x ananassa
FAN10G3291 Fragaria x ananassa
FAN19G3043 Fragaria x ananassa
FAN26G0056 Fragaria x ananassa
FAN28G0741 Fragaria x ananassa
FvH4_1g25950 Fragaria vesca
FvH4_7g05510 Fragaria vesca
Glyma.04G007300 Glycine max
Glyma.09G222600 Glycine max
Glyma.09G222700 Glycine max
Glyma.12G036200 Glycine max
Gohir.A03G199800 Gossypium hirsutum
Gohir.A12G040800 Gossypium hirsutum
Gohir.A13G086600 Gossypium hirsutum
Gohir.D02G221100 Gossypium hirsutum
Gohir.D12G031600 Gossypium hirsutum
Gohir.D13G090700 Gossypium hirsutum
Gorai.001G244000 Gossypium raimondii
Gorai.005G249000 Gossypium raimondii
Gorai.008G032300 Gossypium raimondii
GSVIVG01024157001 Vitis vinifera
HanXRQChr02g0034601 Helianthus annuus
HanXRQChr10g0287691 Helianthus annuus
HanXRQChr10g0287711 Helianthus annuus
HanXRQChr17g0556431 Helianthus annuus
Haze_02226 Corylus avellana
Hma1.2p1_0032F.1_g020010 Hydrangea macrophylla
HPP92_025157 Vanilla planifolia
Lalb_Chr03g0025291 Lupinus albus
Lalb_Chr19g0139021 Lupinus albus
Lj1g0003614 Lotus japonicus
Lj3g0001648 Lotus japonicus
Lj5A188T37 Lonicera japonica
Lj9P383T56 Lonicera japonica
Lj9P383T58 Lonicera japonica
Lj9P385T27 Lonicera japonica
Lsat_1_v5_gn_8_126900 Lactuca sativa
Lsat_1_v5_gn_9_69161 Lactuca sativa
Manes.04G082400 Manihot esculenta
Manes.11G081000 Manihot esculenta
Mapoly0004s0191 Marchantia polymorpha
MBI13_g04772_MAGBIO Magnolia biondii
MCO03G032 Micromonas commoda
MD00G1066600 Malus domestica
MD10G1061900 Malus domestica
Medtr3g117590 Medicago truncatula
Medtr4g072110 Medicago truncatula
MELO3C020749.2 Cucumis melo
Migut.B00124 Erythranthe guttata
Migut.N01295 Erythranthe guttata
MSTRG.16876 Avicennia marina
MSTRG.20022 Avicennia marina
Nitab4.5_0001317g0010 Nicotiana tabacum
Nitab4.5_0002096g0040 Nicotiana tabacum
Nitab4.5_0010885g0010 Nicotiana tabacum
Nn1g00168 Nelumbo nucifera
Nn3g19434 Nelumbo nucifera
Oeu004712.1 Olea europaea
Oeu020675.1 Olea europaea
Oeu060413.1 Olea europaea
Os01g0873100 Oryza sativa ssp. japonica
Os05g0430800 Oryza sativa ssp. japonica
Peaxi162Scf00362g01152 Petunia axillaris
Peaxi162Scf00538g00230 Petunia axillaris
Peaxi162Scf01124g00005 Petunia axillaris
PGR042G2474 Punica granatum
PGSC0003DMG400001618 Solanum tuberosum
PGSC0003DMG400038943 Solanum tuberosum
Phvul.009G002200 Phaseolus vulgaris
Phvul.011G103800 Phaseolus vulgaris
Phvul.011G170200 Phaseolus vulgaris
Potri.004G164000 Populus trichocarpa
Potri.009G125600 Populus trichocarpa
Pp3c3_30850 Physcomitrium patens
Pp3c3_30900 Physcomitrium patens
Pp3c8_9030 Physcomitrium patens
Prupe.8G082700 Prunus persica
Psat5g003760 Pisum sativum
Psat7g181880 Pisum sativum
PSO017G4342 Papaver somniferum
PSO063G5964 Papaver somniferum
PSO063G6732 Papaver somniferum
PSO782G1003 Papaver somniferum
PSO782G1317 Papaver somniferum
PSO782G2548 Papaver somniferum
PSO832G3932 Papaver somniferum
QL11p046618 Quercus lobata
RcHm_v2.0_Chr6g0268481 Rosa chinensis
RcHm_v2.0_Chr6g0268491 Rosa chinensis
Rhsim05G0067600 Rhododendron simsii
Rhsim11G0184700 Rhododendron simsii
Sabra04G0110200 Salix brachista
Sabra09G0096600 Salix brachista
SalBow3G3567 Salvia bowleyana
SalBow6G6306 Salvia bowleyana
Sc10g0003840 Simmondsia chinensis
Sed0000011 Sechium edule
Sed0006195 Sechium edule
Sed0025344 Sechium edule
SEGI_05430 Sequoiadendron giganteum
SEGI_09670 Sequoiadendron giganteum
SEGI_12838 Sequoiadendron giganteum
SGA_v2.0_scaffold58G20432 Striga asiatica
SHI05633 Sapria himalayana
SMO172G0197 Selaginella moellendorffii
SMO198G0047 Selaginella moellendorffii
SMO351G0118 Selaginella moellendorffii
Solyc01g110520.3 Solanum lycopersicum
Sopen01g035190 Solanum pennellii
Sopen01g052650 Solanum pennellii
Sp3g29810 Schrenkiella parvula
Sp7g32520 Schrenkiella parvula
TAR375G1067 Trochodendron aralioides
TAR629G0214 Trochodendron aralioides
TAR636G1444 Trochodendron aralioides
THA.LOC104804340 Tarenaya hassleriana
THA.LOC104807289 Tarenaya hassleriana
THA.LOC104807871 Tarenaya hassleriana
Thecc.02G073300 Theobroma cacao
Thhalv10022626m.g Eutrema salsugineum
Thhalv10024812m.g Eutrema salsugineum
TPR.G28165 Trifolium pratense
TPR.G32217 Trifolium pratense
TWI75G0372 Tripterygium wilfordii
TWI79G0659 Tripterygium wilfordii
TWI79G1598 Tripterygium wilfordii
unitig_26.g10003 Utricularia gibba
unitig_749.g14000 Utricularia gibba
vmacro17411 Vaccinium macrocarpon
vmacro22696 Vaccinium macrocarpon
VMungo0331G0501 Vigna mungo
VMungo1127G1175 Vigna mungo
VMungo1309G0695 Vigna mungo
VMungo1309G1292 Vigna mungo
Zm00001eb146310 Zea mays
Zm00001eb289270 Zea mays
Zm00001eb348710 Zea mays

User provided reference genes

Program Settings