Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p17260 Brassica napus
A07p05110 Brassica napus
A09p15560 Brassica napus
Aa31LG7G9560 Aethionema arabicum
Aa31sc26G130 Aethionema arabicum
Aa31sc26G90 Aethionema arabicum
Aa31sc46G40 Aethionema arabicum
Actinidia08108 Actinidia chinensis
Actinidia30696 Actinidia chinensis
Actinidia35403 Actinidia chinensis
Actinidia37152 Actinidia chinensis
Ah.02g130420 Amaranthus hybridus
AL1G63810 Arabidopsis lyrata
AL1G63990 Arabidopsis lyrata
AL1G64360 Arabidopsis lyrata
AL6G21220 Arabidopsis lyrata
AL7G45710 Arabidopsis lyrata
AL8G32350 Arabidopsis lyrata
Aqoxy3G01339 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea
AT1G30060 Arabidopsis thaliana
AT1G55865 Arabidopsis thaliana
AT2G01800 Arabidopsis thaliana
AT2G02770 Arabidopsis thaliana
AT4G00580 Arabidopsis thaliana
AT4G00920 Arabidopsis thaliana
AT4G00930 Arabidopsis thaliana
AT5G37190 Arabidopsis thaliana
ATR0751G078 Amborella trichopoda
ATR0824G200 Amborella trichopoda
Atru.chr11.2201 Acer truncatum
Atru.chr2.3697 Acer truncatum
AUR62017115 Chenopodium quinoa
AUR62036468 Chenopodium quinoa
BcaB02g10795 Brassica carinata
BcaB07g31396 Brassica carinata
BcaC02g10405 Brassica carinata
BcaC04g22481 Brassica carinata
BcaC06g31928 Brassica carinata
BcaC06g36075 Brassica carinata
BcaC08g44222 Brassica carinata
BolC4t24461H Brassica oleracea
BolC6t36826H Brassica oleracea
BolC7t41233H Brassica oleracea
BolC9t54783H Brassica oleracea
BraA01t02635Z Brassica rapa
BraA05t20625Z Brassica rapa
BraA09t37196Z Brassica rapa
C04p29310 Brassica napus
C06p16270 Brassica napus
C07p08170 Brassica napus
C09p18810 Brassica napus
CAN.G350.32 Capsicum annuum
CAN.G650.29 Capsicum annuum
CANSAT01G3281 Cannabis sativa
CANSAT78G1634 Cannabis sativa
CARHR174360 Cardamine hirsuta
CARHR215860 Cardamine hirsuta
Carub.0001s4444 Capsella rubella
Carub.0001s4470 Capsella rubella
Carub.0003s3440 Capsella rubella
Carub.0007s3238 Capsella rubella
Ca_02000_v3 Cicer arietinum L.
Cc05_g15010 Coffea canephora
Cc11_g16250 Coffea canephora
CDE01G0625 Ceratophyllum demersum
CDE02G3774 Ceratophyllum demersum
Cfa009271 Carpinus fangiana
Ciclev10008896m.g Citrus clementina
Ciclev10030561m.g Citrus clementina
CiPaw.11G070600 Carya illinoinensis
CiPaw.12G138700 Carya illinoinensis
ClCG08G017500 Citrullus lanatus
ClCG09G021400 Citrullus lanatus
COL.COLO4_09843 Corchorus olitorius
COL.COLO4_23547 Corchorus olitorius
Cpa.g.sc12.119 Carica papaya
Cpa.g.sc369.5 Carica papaya
Cpa.g.sc369.6 Carica papaya
CsaV3_2G025110 Cucumis sativus L.
CsaV3_7G011440 Cucumis sativus L.
DCAR_001919 Daucus carota
DCAR_024069 Daucus carota
Dinv10342 Davidia involucrata
Dinv14763 Davidia involucrata
Duzib213G0291 Durio zibethinus
Duzib251G0242 Durio zibethinus
Duzib268G1590 Durio zibethinus
EL10Ac4g07554 Beta vulgaris
EL10As2g23204 Beta vulgaris
Eucgr.B03235 Eucalyptus grandis
Eucgr.F03684 Eucalyptus grandis
FAN19G1520 Fragaria x ananassa
FAN23G2175 Fragaria x ananassa
FAN26G0704 Fragaria x ananassa
FAN28G3008 Fragaria x ananassa
FvH4_1g28370 Fragaria vesca
Glyma.09G051600 Glycine max
Glyma.11G245500 Glycine max
Glyma.15G157900 Glycine max
Glyma.18G011700 Glycine max
Gohir.A03G131400 Gossypium hirsutum
Gohir.A13G132200 Gossypium hirsutum
Gohir.D02G155300 Gossypium hirsutum
Gohir.D13G135600 Gossypium hirsutum
Gorai.005G174200 Gossypium raimondii
Gorai.013G152000 Gossypium raimondii
GSVIVG01000596001 Vitis vinifera
GSVIVG01014696001 Vitis vinifera
HanXRQChr01g0023571 Helianthus annuus
HanXRQChr08g0208041 Helianthus annuus
HanXRQChr11g0334111 Helianthus annuus
Haze_09834 Corylus avellana
Haze_12305 Corylus avellana
Hma1.2p1_0815F.1_g222840 Hydrangea macrophylla
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla
HPP92_003025 Vanilla planifolia
HPP92_027528 Vanilla planifolia
Hund23103 Selenicereus undatus
Lalb_Chr11g0075601 Lupinus albus
Lalb_Chr18g0052131 Lupinus albus
Lalb_Chr23g0277781 Lupinus albus
Lj4g0027725 Lotus japonicus
Lj6A818T39 Lonicera japonica
Lj6g0020676 Lotus japonicus
Lsat_1_v5_gn_4_112241 Lactuca sativa
Lsat_1_v5_gn_6_94960 Lactuca sativa
Lsat_1_v5_gn_7_114301 Lactuca sativa
Lsat_1_v5_gn_7_50160 Lactuca sativa
Lsat_1_v5_gn_8_150460 Lactuca sativa
Manes.02G222900 Manihot esculenta
Manes.12G018600 Manihot esculenta
Manes.13G019100 Manihot esculenta
Mapoly0119s0035 Marchantia polymorpha
MBI14_g22553_MAGBIO Magnolia biondii
Medtr2g036070 Medicago truncatula
Medtr3g086220 Medicago truncatula
MELO3C010709.2 Cucumis melo
MELO3C024948.2 Cucumis melo
Migut.A01086 Erythranthe guttata
Migut.K00651 Erythranthe guttata
MSTRG.544 Avicennia marina
MSTRG.7960 Avicennia marina
Nitab4.5_0000041g0190 Nicotiana tabacum
Nitab4.5_0001159g0240 Nicotiana tabacum
Nitab4.5_0001246g0040 Nicotiana tabacum
Nitab4.5_0006876g0020 Nicotiana tabacum
Nitab4.5_0007393g0020 Nicotiana tabacum
Nitab4.5_0011762g0010 Nicotiana tabacum
Nn1g07525 Nelumbo nucifera
Nn4g22491 Nelumbo nucifera
Oeu038657.1 Olea europaea
Peaxi162Scf00128g00645 Petunia axillaris
Peaxi162Scf01762g00013 Petunia axillaris
PGR031G0790 Punica granatum
PGR031G1574 Punica granatum
PGR102G1092 Punica granatum
PGSC0003DMG400010741 Solanum tuberosum
Phvul.001G257200 Phaseolus vulgaris
Phvul.009G242100 Phaseolus vulgaris
Potri.005G066950 Populus trichocarpa
Potri.007G102500 Populus trichocarpa
Potri.010G052200 Populus trichocarpa
Pp3c7_5750 Physcomitrium patens
Prupe.8G267500 Prunus persica
Psat1g149600 Pisum sativum
Psat5g094240 Pisum sativum
PSO017G4976 Papaver somniferum
PSO339G2613 Papaver somniferum
PSO339G3984 Papaver somniferum
PSO384G2180 Papaver somniferum
PSO384G3490 Papaver somniferum
PSO478G3985 Papaver somniferum
QL03p055923 Quercus lobata
QL08p003943 Quercus lobata
RcHm_v2.0_Chr3g0496661 Rosa chinensis
Rhsim04G0012300 Rhododendron simsii
Rhsim10G0199200 Rhododendron simsii
Rhsim10G0199400 Rhododendron simsii
Rhsim10G0204100 Rhododendron simsii
Rhsim12G0037600 Rhododendron simsii
Sabra07G0084200 Salix brachista
Sabra10G0018100 Salix brachista
SalBow2G2700 Salvia bowleyana
SalBow6G1550 Salvia bowleyana
SalBow8G3261 Salvia bowleyana
Sc14g0008880 Simmondsia chinensis
Sc16g0008130 Simmondsia chinensis
Sed0006554 Sechium edule
Sed0020016 Sechium edule
Sed0025324 Sechium edule
SEGI_35034 Sequoiadendron giganteum
SGA_v2.0_scaffold124G33641 Striga asiatica
SGA_v2.0_scaffold140G35473 Striga asiatica
SGA_v2.0_scaffold171G38860 Striga asiatica
Solyc05g014130.3 Solanum lycopersicum
Sopen05g009140 Solanum pennellii
Sp1g41465 Schrenkiella parvula
Sp7g04810 Schrenkiella parvula
Sp7g04860 Schrenkiella parvula
Sp7g05240 Schrenkiella parvula
Sp7g05260 Schrenkiella parvula
TAR629G0397 Trochodendron aralioides
TAR629G1344 Trochodendron aralioides
THA.LOC104807749 Tarenaya hassleriana
THA.LOC104808433 Tarenaya hassleriana
THA.LOC104822728 Tarenaya hassleriana
THA.LOC104825537 Tarenaya hassleriana
THA.LOC104825538 Tarenaya hassleriana
THA.LOC104825539 Tarenaya hassleriana
Thecc.02G268600 Theobroma cacao
Thecc.07G012300 Theobroma cacao
Thhalv10023229m.g Eutrema salsugineum
Thhalv10027990m.g Eutrema salsugineum
Thhalv10028078m.g Eutrema salsugineum
Thhalv10028182m.g Eutrema salsugineum
TPR.G14234 Trifolium pratense
TPR.G1682 Trifolium pratense
TPR.G1700 Trifolium pratense
TPR.G33652 Trifolium pratense
TWI36G0003 Tripterygium wilfordii
TWI38G1195 Tripterygium wilfordii
unitig_899.g14722 Utricularia gibba
vmacro01106 Vaccinium macrocarpon
vmacro09646 Vaccinium macrocarpon
VMungo1383G2020 Vigna mungo
Zm00001eb165220 Zea mays

User provided reference genes

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