Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p18860 Brassica napus
A07p21400 Brassica napus
A08p10400 Brassica napus
Aa31LG10G8300 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2586 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5147 Anthoceros agrestis
Actinidia03827 Actinidia chinensis
Actinidia26638 Actinidia chinensis
Ah.15g091370 Amaranthus hybridus
AL1G45870 Arabidopsis lyrata
AL5G34010 Arabidopsis lyrata
Aqoxy1G01043 Aquilegia oxysepala
Aqoxy2G03809 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.12WBQG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.570P5C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F8T0MB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GLV5L5 Arachis hypogaea
AT1G31800 Arabidopsis thaliana
AT3G53130 Arabidopsis thaliana
ATR0088G045 Amborella trichopoda
ATR0661G531 Amborella trichopoda
Atru.chr12.2158 Acer truncatum
Atru.chr8.1712 Acer truncatum
AUR62000370 Chenopodium quinoa
AUR62006725 Chenopodium quinoa
AUR62026972 Chenopodium quinoa
AUR62029077 Chenopodium quinoa
BcaB04g18125 Brassica carinata
BcaC07g37726 Brassica carinata
BolC6t37285H Brassica oleracea
BolC8t48109H Brassica oleracea
BraA01t01829Z Brassica rapa
BraA07t29827Z Brassica rapa
BraA08t33039Z Brassica rapa
C06p21010 Brassica napus
CAN.G1598.1 Capsicum annuum
CAN.G276.8 Capsicum annuum
CAN.G4.31 Capsicum annuum
CAN.G541.26 Capsicum annuum
CAN.G598.8 Capsicum annuum
CANSAT11G0194 Cannabis sativa
CANSAT78G1928 Cannabis sativa
CARHR031100 Cardamine hirsuta
CARHR162980 Cardamine hirsuta
Carub.0001s3010 Capsella rubella
Carub.0005s1966 Capsella rubella
Ca_07959_v3 Cicer arietinum L.
Ca_11534_v3 Cicer arietinum L.
Ca_11536_v3 Cicer arietinum L.
Ca_11539_v3 Cicer arietinum L.
CBR_g21846 Chara braunii
CBR_g41079 Chara braunii
CBR_g4469 Chara braunii
Cc06_g04720 Coffea canephora
Cc09_g03290 Coffea canephora
CDE02G2271 Ceratophyllum demersum
CDE02G4052 Ceratophyllum demersum
CDE08G1160 Ceratophyllum demersum
Cfa006301 Carpinus fangiana
Cfa016465 Carpinus fangiana
Ciclev10011312m.g Citrus clementina
Ciclev10011420m.g Citrus clementina
CiPaw.07G075100 Carya illinoinensis
CiPaw.09G004700 Carya illinoinensis
ClCG04G009570 Citrullus lanatus
ClCG10G008080 Citrullus lanatus
COL.COLO4_00003 Corchorus olitorius
COL.COLO4_22248 Corchorus olitorius
Cpa.g.sc123.12 Carica papaya
Cpa.g.sc5.131 Carica papaya
Cre02.g142266 Chlamydomonas reinhardtii
Cre08.g373100 Chlamydomonas reinhardtii
Cre16.g678437 Chlamydomonas reinhardtii
CsaV3_3G007050 Cucumis sativus L.
CsaV3_6G040180 Cucumis sativus L.
CSS0037928 Camellia sinensis var. sinensis
DCAR_017658 Daucus carota
DCAR_023843 Daucus carota
Dinv05894 Davidia involucrata
Dinv37353 Davidia involucrata
Duzib106G0318 Durio zibethinus
Duzib106G0985 Durio zibethinus
Duzib128G0007 Durio zibethinus
ECA238G4204 Erigeron canadensis
ECA248G1435 Erigeron canadensis
EL10Ac4g09433 Beta vulgaris
EL10Ac7g16711 Beta vulgaris
Eucgr.A01599 Eucalyptus grandis
Eucgr.H01373 Eucalyptus grandis
FAN02G1694 Fragaria x ananassa
FAN05G1696 Fragaria x ananassa
FAN05G2872 Fragaria x ananassa
FAN05G5118 Fragaria x ananassa
FAN09G3806 Fragaria x ananassa
FAN14G4358 Fragaria x ananassa
FAN14G4971 Fragaria x ananassa
FvH4_6g00890 Fragaria vesca
FvH4_6g17140 Fragaria vesca
Glyma.09G252800 Glycine max
Glyma.10G062900 Glycine max
Glyma.13G147500 Glycine max
Glyma.18G239900 Glycine max
Gohir.A11G323100 Gossypium hirsutum
Gohir.A13G154700 Gossypium hirsutum
Gohir.D11G342200 Gossypium hirsutum
Gohir.D13G159400 Gossypium hirsutum
Gorai.007G372200 Gossypium raimondii
Gorai.013G180200 Gossypium raimondii
GSVIVG01019158001 Vitis vinifera
GSVIVG01033707001 Vitis vinifera
HanXRQChr01g0028241 Helianthus annuus
HanXRQChr17g0559051 Helianthus annuus
Haze_04497 Corylus avellana
Haze_19470 Corylus avellana
Hma1.2p1_2774F.1_g328270 Hydrangea macrophylla
HPP92_003369 Vanilla planifolia
HPP92_015168 Vanilla planifolia
Hund20285 Selenicereus undatus
Hund21873 Selenicereus undatus
Lalb_Chr03g0038311 Lupinus albus
Lalb_Chr21g0315241 Lupinus albus
Lj1g0018224 Lotus japonicus
Lj2C52G4 Lonicera japonica
Lj3A994T59 Lonicera japonica
Lj5g0025528 Lotus japonicus
Lsat_1_v5_gn_1_52661 Lactuca sativa
Lsat_1_v5_gn_2_16321 Lactuca sativa
Manes.08G016300 Manihot esculenta
Manes.09G183600 Manihot esculenta
Mapoly0011s0135 Marchantia polymorpha
Mapoly0028s0136 Marchantia polymorpha
MBI10_g09189_MAGBIO Magnolia biondii
MBI18_g15121_MAGBIO Magnolia biondii
MBI18_g19460_MAGBIO Magnolia biondii
MBI18_g38520_MAGBIO Magnolia biondii
MBI18_g44466_MAGBIO Magnolia biondii
MCO10G170 Micromonas commoda
MCO16G584 Micromonas commoda
MD04G1239800 Malus domestica
MD12G1257000 Malus domestica
MD14G1097800 Malus domestica
Medtr1g062190 Medicago truncatula
Medtr7g079440 Medicago truncatula
MELO3C014945.2 Cucumis melo
MELO3C024495.2 Cucumis melo
Migut.F02071 Erythranthe guttata
Migut.J00470 Erythranthe guttata
MSTRG.19204 Avicennia marina
MSTRG.9229 Avicennia marina
Nitab4.5_0000132g0440 Nicotiana tabacum
Nitab4.5_0000456g0030 Nicotiana tabacum
Nitab4.5_0005208g0020 Nicotiana tabacum
Nitab4.5_0009814g0010 Nicotiana tabacum
Nitab4.5_0018702g0010 Nicotiana tabacum
Nn1g03127 Nelumbo nucifera
Nn2g13887 Nelumbo nucifera
Nn3g19881 Nelumbo nucifera
Oeu010181.1 Olea europaea
Oeu041470.1 Olea europaea
Oeu054597.1 Olea europaea
Os02g0817900 Oryza sativa ssp. japonica
Os10g0546600 Oryza sativa ssp. japonica
Peaxi162Scf00110g00819 Petunia axillaris
Peaxi162Scf00215g00510 Petunia axillaris
PGR004G1849 Punica granatum
PGR031G1111 Punica granatum
PGSC0003DMG400028180 Solanum tuberosum
Phvul.007G226500 Phaseolus vulgaris
Phvul.008G056400 Phaseolus vulgaris
Potri.006G119800 Populus trichocarpa
Potri.013G088100 Populus trichocarpa
Pp3c5_28020 Physcomitrium patens
Pp3c6_15960 Physcomitrium patens
PRCOL_00002320 Prasinoderma coloniale
Prupe.6G358000 Prunus persica
Prupe.7G123500 Prunus persica
Psat3g105040 Pisum sativum
Psat6g077400 Pisum sativum
PSO017G2236 Papaver somniferum
PSO063G1081 Papaver somniferum
PSO339G0330 Papaver somniferum
QL01p050622 Quercus lobata
QL07p041486 Quercus lobata
RcHm_v2.0_Chr3g0448381 Rosa chinensis
RcHm_v2.0_Chr3g0471231 Rosa chinensis
Rhsim04G0139400 Rhododendron simsii
Rhsim04G0139800 Rhododendron simsii
Rhsim05G0168700 Rhododendron simsii
Sabra06G0094300 Salix brachista
Sabra13G0069700 Salix brachista
SalBow1G1247 Salvia bowleyana
SalBow3G1680 Salvia bowleyana
Sc09g0001650 Simmondsia chinensis
Sc20g0005820 Simmondsia chinensis
Sed0014925 Sechium edule
Sed0016129 Sechium edule
Sed0016380 Sechium edule
Sed0023390 Sechium edule
SEGI_02747 Sequoiadendron giganteum
SEGI_12277 Sequoiadendron giganteum
SEGI_13377 Sequoiadendron giganteum
SEGI_25701 Sequoiadendron giganteum
SGA_v2.0_scaffold13G06352 Striga asiatica
SGA_v2.0_scaffold40G15455 Striga asiatica
SMO276G0038 Selaginella moellendorffii
SMO351G0009 Selaginella moellendorffii
Solyc04g051190.3 Solanum lycopersicum
Solyc10g083790.3 Solanum lycopersicum
Sopen04g022560 Solanum pennellii
Sopen10g033240 Solanum pennellii
Sp1g27490 Schrenkiella parvula
Sp5g09190 Schrenkiella parvula
TAR362G0187 Trochodendron aralioides
TAR623G0464 Trochodendron aralioides
THA.LOC104814399 Tarenaya hassleriana
THA.LOC104818583 Tarenaya hassleriana
Thecc.05G074700 Theobroma cacao
Thecc.05G203300 Theobroma cacao
Thhalv10007138m.g Eutrema salsugineum
Thhalv10010267m.g Eutrema salsugineum
Thhalv10023482m.g Eutrema salsugineum
TPR.G22456 Trifolium pratense
TPR.G29411 Trifolium pratense
TWI59G0800 Tripterygium wilfordii
TWI74G0518 Tripterygium wilfordii
unitig_22.g5107 Utricularia gibba
vmacro08803 Vaccinium macrocarpon
vmacro19610 Vaccinium macrocarpon
VMungo0720G0039 Vigna mungo
VMungo1383G3642 Vigna mungo
Zm00001eb258960 Zea mays

User provided reference genes

Program Settings