Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p27630 Brassica napus
A06p48110 Brassica napus
Aa31LG9G13120 Aethionema arabicum
Aa31LG9G13130 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5618 Anthoceros agrestis
Actinidia00550 Actinidia chinensis
Actinidia02231 Actinidia chinensis
Ah.01g019110 Amaranthus hybridus
AL1G52630 Arabidopsis lyrata
AL2G35380 Arabidopsis lyrata
AL8G17760 Arabidopsis lyrata
Aqoxy5G01551 Aquilegia oxysepala
Aqoxy6G01197 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5QJ4TD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DPB7ZS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MMR4A8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W7U0H3 Arachis hypogaea
AT1G45000 Arabidopsis thaliana
AT5G43010 Arabidopsis thaliana
ATR1154G043 Amborella trichopoda
Atru.chr13.406 Acer truncatum
Atru.chr9.357 Acer truncatum
AUR62011144 Chenopodium quinoa
AUR62011284 Chenopodium quinoa
AUR62011285 Chenopodium quinoa
AUR62013343 Chenopodium quinoa
AUR62016773 Chenopodium quinoa
AUR62016774 Chenopodium quinoa
BcaB05g24907 Brassica carinata
BcaB07g30595 Brassica carinata
BcaC02g10784 Brassica carinata
BcaC03g16551 Brassica carinata
BcaC06g31732 Brassica carinata
BolC2t09290H Brassica oleracea
BolC2t10413H Brassica oleracea
BolC4t24016H Brassica oleracea
BraA02t07797Z Brassica rapa
BraA06t27680Z Brassica rapa
C02p43690 Brassica napus
C04p25120 Brassica napus
CAN.G1544.8 Capsicum annuum
CANSAT11G0352 Cannabis sativa
CANSAT25G3384 Cannabis sativa
CARHR036180 Cardamine hirsuta
CARHR068820 Cardamine hirsuta
CARHR180990 Cardamine hirsuta
Carub.0001s3545 Capsella rubella
Carub.0002s2230 Capsella rubella
Carub.0008s0574 Capsella rubella
Ca_02078_v3 Cicer arietinum L.
Ca_15347_v3 Cicer arietinum L.
Ca_30248_v3 Cicer arietinum L.
CBR_g6594 Chara braunii
Cc02_g17230 Coffea canephora
CDE04G3711 Ceratophyllum demersum
CDE06G0282 Ceratophyllum demersum
CDE06G2317 Ceratophyllum demersum
Cfa005057 Carpinus fangiana
Cfa013878 Carpinus fangiana
Cfa027127 Carpinus fangiana
Ciclev10001384m.g Citrus clementina
CiPaw.05G069800 Carya illinoinensis
CiPaw.07G156700 Carya illinoinensis
CiPaw.08G060700 Carya illinoinensis
ClCG08G014720 Citrullus lanatus
COL.COLO4_26240 Corchorus olitorius
Cpa.g.sc106.1 Carica papaya
Cpa.g.sc99.7 Carica papaya
Cre17.g710150 Chlamydomonas reinhardtii
CsaV3_2G029040 Cucumis sativus L.
CsaV3_2G029050 Cucumis sativus L.
CSS0018015 Camellia sinensis var. sinensis
CSS0023561 Camellia sinensis var. sinensis
CSS0033605 Camellia sinensis var. sinensis
DCAR_023011 Daucus carota
Dinv31787 Davidia involucrata
Dinv39457 Davidia involucrata
Dinv42037 Davidia involucrata
Duzib041G0366 Durio zibethinus
Duzib093G1071 Durio zibethinus
Duzib116G0508 Durio zibethinus
ECA233G4464 Erigeron canadensis
ECA234G0737 Erigeron canadensis
ECA240G4316 Erigeron canadensis
EL10Ac9g21690 Beta vulgaris
Eucgr.F01600 Eucalyptus grandis
FAN15G1835 Fragaria x ananassa
FAN15G3471 Fragaria x ananassa
FAN20G1589 Fragaria x ananassa
FAN20G2809 Fragaria x ananassa
FAN24G2742 Fragaria x ananassa
FAN27G2131 Fragaria x ananassa
FvH4_2g09670 Fragaria vesca
FvH4_2g09690 Fragaria vesca
Glyma.04G029400 Glycine max
Glyma.06G009700 Glycine max
Glyma.06G029400 Glycine max
Glyma.14G071000 Glycine max
Glyma.17G253600 Glycine max
Gohir.A03G080100 Gossypium hirsutum
Gohir.A05G190500 Gossypium hirsutum
Gohir.A05G258316 Gossypium hirsutum
Gohir.D02G096200 Gossypium hirsutum
Gohir.D05G193900 Gossypium hirsutum
Gohir.D05G259801 Gossypium hirsutum
Gorai.005G109900 Gossypium raimondii
Gorai.009G198900 Gossypium raimondii
Gorai.009G271600 Gossypium raimondii
GSVIVG01009774001 Vitis vinifera
GSVIVG01023828001 Vitis vinifera
HanXRQChr03g0069341 Helianthus annuus
HanXRQChr10g0307011 Helianthus annuus
HanXRQChr12g0374321 Helianthus annuus
Haze_02326 Corylus avellana
Haze_26193 Corylus avellana
Hma1.2p1_0469F.1_g158900 Hydrangea macrophylla
Hma1.2p1_0851F.1_g228410 Hydrangea macrophylla
HPP92_003113 Vanilla planifolia
HPP92_019081 Vanilla planifolia
Hund00239 Selenicereus undatus
Hund06251 Selenicereus undatus
Lalb_Chr08g0245961 Lupinus albus
Lalb_Chr11g0062191 Lupinus albus
Lalb_Chr14g0369541 Lupinus albus
Lalb_Chr23g0266491 Lupinus albus
Lj1A890T54 Lonicera japonica
Lj1g0015561 Lotus japonicus
Lj5g0026627 Lotus japonicus
Lj9A377T90 Lonicera japonica
Lsat_1_v5_gn_5_120460 Lactuca sativa
Lsat_1_v5_gn_9_107940 Lactuca sativa
Manes.05G155000 Manihot esculenta
Manes.18G021301 Manihot esculenta
Mapoly0009s0112 Marchantia polymorpha
MBI10_g00747_MAGBIO Magnolia biondii
MBI16_g23835_MAGBIO Magnolia biondii
MD04G1152100 Malus domestica
MD05G1060900 Malus domestica
MD10G1068700 Malus domestica
Medtr3g112260 Medicago truncatula
Medtr3g117230 Medicago truncatula
MELO3C010970.2 Cucumis melo
MELO3C030118.2 Cucumis melo
Migut.B00207 Erythranthe guttata
Migut.N01261 Erythranthe guttata
MSTRG.27684 Avicennia marina
MSTRG.5408 Avicennia marina
Nitab4.5_0000029g0120 Nicotiana tabacum
Nitab4.5_0001317g0120 Nicotiana tabacum
Nitab4.5_0003234g0060 Nicotiana tabacum
Nitab4.5_0005128g0040 Nicotiana tabacum
Nitab4.5_0005796g0020 Nicotiana tabacum
Nitab4.5_0012022g0010 Nicotiana tabacum
Nn5g29710 Nelumbo nucifera
Nn8g41134 Nelumbo nucifera
Oeu041623.1 Olea europaea
Oeu046143.1 Olea europaea
Os02g0199900 Oryza sativa ssp. japonica
Os06g0607800 Oryza sativa ssp. japonica
Peaxi162Scf00003g00719 Petunia axillaris
Peaxi162Scf00016g00425 Petunia axillaris
Peaxi162Scf00028g00194 Petunia axillaris
PGR031G2028 Punica granatum
PGSC0003DMG400030960 Solanum tuberosum
Phvul.001G011400 Phaseolus vulgaris
Phvul.009G005000 Phaseolus vulgaris
Phvul.009G060700 Phaseolus vulgaris
Potri.002G031400 Populus trichocarpa
Potri.004G158600 Populus trichocarpa
Potri.005G231700 Populus trichocarpa
Potri.009G120500 Populus trichocarpa
Pp3c12_8530 Physcomitrium patens
Pp3c3_23650 Physcomitrium patens
Pp3c4_15180 Physcomitrium patens
PRCOL_00000261 Prasinoderma coloniale
Prupe.8G090700 Prunus persica
Psat5g005360 Pisum sativum
Psat5g015560 Pisum sativum
PSO170G6507 Papaver somniferum
PSO170G6826 Papaver somniferum
PSO210G2212 Papaver somniferum
PSO782G4967 Papaver somniferum
PSO782G5436 Papaver somniferum
PSO832G0698 Papaver somniferum
QL02p009661 Quercus lobata
RcHm_v2.0_Chr6g0265991 Rosa chinensis
RcHm_v2.0_Chr6g0266001 Rosa chinensis
Rhsim05G0070900 Rhododendron simsii
Rhsim07G0242400 Rhododendron simsii
Rhsim07G0243000 Rhododendron simsii
Sabra02G0025200 Salix brachista
Sabra04G0105900 Salix brachista
SalBow3G4258 Salvia bowleyana
SalBow6G2237 Salvia bowleyana
Sc08g0000670 Simmondsia chinensis
Sc18g0005140 Simmondsia chinensis
Sed0004477 Sechium edule
Sed0010068 Sechium edule
SEGI_09246 Sequoiadendron giganteum
SGA_v2.0_scaffold58G20500 Striga asiatica
SMO116G0471 Selaginella moellendorffii
Solyc01g109940.3 Solanum lycopersicum
Solyc10g054040.3 Solanum lycopersicum
Sopen01g052130 Solanum pennellii
Sopen10g023900 Solanum pennellii
Sp1g33830 Schrenkiella parvula
Sp2g07780 Schrenkiella parvula
TAR376G0806 Trochodendron aralioides
TAR381G1663 Trochodendron aralioides
THA.LOC104812563 Tarenaya hassleriana
THA.LOC104814153 Tarenaya hassleriana
THA.LOC104822836 Tarenaya hassleriana
Thecc.08G033800 Theobroma cacao
Thhalv10003221m.g Eutrema salsugineum
Thhalv10011548m.g Eutrema salsugineum
TPR.G12325 Trifolium pratense
TPR.G32186 Trifolium pratense
TWI31G0054 Tripterygium wilfordii
TWI79G1362 Tripterygium wilfordii
unitig_22.g5170 Utricularia gibba
unitig_8.g4048 Utricularia gibba
unitig_9.g29491 Utricularia gibba
vmacro04302 Vaccinium macrocarpon
vmacro17458 Vaccinium macrocarpon
vmacro22854 Vaccinium macrocarpon
VMungo0647G1835 Vigna mungo
VMungo1309G0409 Vigna mungo
VMungo1309G0952 Vigna mungo
Zm00001eb205820 Zea mays
Zm00001eb235880 Zea mays
Zm00001eb386560 Zea mays

User provided reference genes

Program Settings