Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p14240 Brassica napus
A03p53910 Brassica napus
Aa31LG6G5020 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1581 Anthoceros agrestis
Actinidia00220 Actinidia chinensis
Actinidia00221 Actinidia chinensis
Actinidia39057 Actinidia chinensis
Ah.07g205390 Amaranthus hybridus
Ah.07g205400 Amaranthus hybridus
AL7G28920 Arabidopsis lyrata
AL7G30550 Arabidopsis lyrata
Aqoxy3G00692 Aquilegia oxysepala
Aqoxy3G00697 Aquilegia oxysepala
Aqoxy3G00698 Aquilegia oxysepala
Aqoxy7G02142 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.HX0PY9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JK8JKR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea
AT4G22970 Arabidopsis thaliana
AT4G24300 Arabidopsis thaliana
AT5G28550 Arabidopsis thaliana
ATR0661G182 Amborella trichopoda
ATR0661G443 Amborella trichopoda
Atru.chr10.692 Acer truncatum
Atru.chr12.1442 Acer truncatum
Atru.chr6.1022 Acer truncatum
Atru.chr6.1027 Acer truncatum
Atru.chr6.1078 Acer truncatum
AUR62006068 Chenopodium quinoa
AUR62035559 Chenopodium quinoa
BcaB02g09105 Brassica carinata
BcaB05g23798 Brassica carinata
BcaC02g11622 Brassica carinata
BcaC02g11623 Brassica carinata
BcaC09g51048 Brassica carinata
BcaNung01007 Brassica carinata
BolC1t01691H Brassica oleracea
BolC4t22359H Brassica oleracea
BolC4t22942H Brassica oleracea
BolC7t45725H Brassica oleracea
BraA01t01371Z Brassica rapa
BraA03t14460Z Brassica rapa
C01p17510 Brassica napus
C04p07370 Brassica napus
C04p12980 Brassica napus
C04p13010 Brassica napus
C04p13030 Brassica napus
C04p13060 Brassica napus
C04p13080 Brassica napus
C07p52320 Brassica napus
CAN.G1352.21 Capsicum annuum
CANSAT11G0811 Cannabis sativa
CANSAT78G1773 Cannabis sativa
CARHR073260 Cardamine hirsuta
CARHR222370 Cardamine hirsuta
CARHR222380 Cardamine hirsuta
CARHR230000 Cardamine hirsuta
CARHR230010 Cardamine hirsuta
CARHR230020 Cardamine hirsuta
CARHR254470 Cardamine hirsuta
CARHR254480 Cardamine hirsuta
CARHR254490 Cardamine hirsuta
CARHR284390 Cardamine hirsuta
CARHR284400 Cardamine hirsuta
CARHR290780 Cardamine hirsuta
Carub.0007s1830 Capsella rubella
Ca_00091_v3 Cicer arietinum L.
Ca_21888_v3 Cicer arietinum L.
Ca_29930_v3 Cicer arietinum L.
CBR_g18638 Chara braunii
Cc02_g22260 Coffea canephora
CDE09G0711 Ceratophyllum demersum
Cfa017189 Carpinus fangiana
Ciclev10000008m.g Citrus clementina
CiPaw.05G042600 Carya illinoinensis
ClCG08G010020 Citrullus lanatus
COL.COLO4_08439 Corchorus olitorius
COL.COLO4_16679 Corchorus olitorius
COL.COLO4_33342 Corchorus olitorius
COL.COLO4_38329 Corchorus olitorius
Cpa.g.sc148.29 Carica papaya
Cpa.g.sc148.31 Carica papaya
Cpa.g.sc148.32 Carica papaya
Cre01.g029200 Chlamydomonas reinhardtii
CsaV3_6G032170 Cucumis sativus L.
CsaV3_6G032190 Cucumis sativus L.
CSS0015736 Camellia sinensis var. sinensis
CSS0019427 Camellia sinensis var. sinensis
CSS0025274 Camellia sinensis var. sinensis
DCAR_005626 Daucus carota
Dinv24260 Davidia involucrata
Dinv37588 Davidia involucrata
Duzib052G0069 Durio zibethinus
ECA234G1843 Erigeron canadensis
ECA236G5108 Erigeron canadensis
EL10Ac3g05252 Beta vulgaris
Eucgr.G00634 Eucalyptus grandis
FAN04G0662 Fragaria x ananassa
FAN04G1156 Fragaria x ananassa
FAN08G3490 Fragaria x ananassa
FAN11G2638 Fragaria x ananassa
FAN13G1302 Fragaria x ananassa
FAN16G3014 Fragaria x ananassa
FAN18G4196 Fragaria x ananassa
FAN25G1732 Fragaria x ananassa
FvH4_3g35420 Fragaria vesca
FvH4_5g29930 Fragaria vesca
FvH4_5g29931 Fragaria vesca
FvH4_5g29932 Fragaria vesca
Glyma.08G184200 Glycine max
Glyma.15G048100 Glycine max
Gohir.A01G176550 Gossypium hirsutum
Gohir.A01G176601 Gossypium hirsutum
Gohir.A01G176651 Gossypium hirsutum
Gohir.D01G167366 Gossypium hirsutum
Gohir.D01G167432 Gossypium hirsutum
Gorai.002G207900 Gossypium raimondii
GSVIVG01005672001 Vitis vinifera
GSVIVG01011206001 Vitis vinifera
GSVIVG01022673001 Vitis vinifera
GSVIVG01023021001 Vitis vinifera
GSVIVG01032173001 Vitis vinifera
GSVIVG01036621001 Vitis vinifera
GSVIVG01038033001 Vitis vinifera
HanXRQChr10g0290421 Helianthus annuus
HanXRQChr11g0344611 Helianthus annuus
Haze_21022 Corylus avellana
HPP92_009112 Vanilla planifolia
Hund11642 Selenicereus undatus
Hund17372 Selenicereus undatus
Hund17373 Selenicereus undatus
Hund21015 Selenicereus undatus
Hund21016 Selenicereus undatus
Hund21017 Selenicereus undatus
Lalb_Chr20g0123401 Lupinus albus
Lj1g0006136 Lotus japonicus
Lj1g0017629 Lotus japonicus
Lj6g0007416 Lotus japonicus
Lj9A311T56 Lonicera japonica
Lj9C311G18 Lonicera japonica
Lsat_1_v5_gn_4_7760 Lactuca sativa
Lsat_1_v5_gn_5_109460 Lactuca sativa
Manes.07G013200 Manihot esculenta
Mapoly0118s0005 Marchantia polymorpha
MD00G1111100 Malus domestica
MD00G1111200 Malus domestica
MD00G1166400 Malus domestica
MD08G1225400 Malus domestica
MD08G1225900 Malus domestica
MD08G1226100 Malus domestica
MD08G1226200 Malus domestica
MD08G1226600 Malus domestica
MD08G1226700 Malus domestica
MD15G1418900 Malus domestica
MD15G1419000 Malus domestica
Medtr2g007790 Medicago truncatula
Medtr7g023120 Medicago truncatula
MELO3C011463.2 Cucumis melo
Migut.B00666 Erythranthe guttata
MSTRG.16534 Avicennia marina
Nitab4.5_0004005g0050 Nicotiana tabacum
Nitab4.5_0005539g0020 Nicotiana tabacum
Nn5g28049 Nelumbo nucifera
Oeu008876.1 Olea europaea
Oeu037466.1 Olea europaea
Oeu043988.1 Olea europaea
Os02g0770700 Oryza sativa ssp. japonica
Peaxi162Scf00011g00138 Petunia axillaris
PGR042G2027 Punica granatum
Phvul.006G212401 Phaseolus vulgaris
Potri.003G021700 Populus trichocarpa
Pp3c8_2900 Physcomitrium patens
Prupe.1G563000 Prunus persica
Psat1g219920 Pisum sativum
PSO170G2118 Papaver somniferum
PSO528G0214 Papaver somniferum
QL02p098685 Quercus lobata
RcHm_v2.0_Chr2g0113201 Rosa chinensis
RcHm_v2.0_Chr3g0475761 Rosa chinensis
RcHm_v2.0_Chr4g0428251 Rosa chinensis
RcHm_v2.0_Chr4g0428261 Rosa chinensis
RcHm_v2.0_Chr7g0177921 Rosa chinensis
RcHm_v2.0_Chr7g0222331 Rosa chinensis
RcHm_v2.0_Chr7g0223761 Rosa chinensis
Rhsim11G0131800 Rhododendron simsii
Sabra03G0013600 Salix brachista
SalBow5G5260 Salvia bowleyana
Sc19g0000800 Simmondsia chinensis
Sed0002146 Sechium edule
SEGI_00066 Sequoiadendron giganteum
SEGI_09006 Sequoiadendron giganteum
SEGI_09272 Sequoiadendron giganteum
SEGI_22976 Sequoiadendron giganteum
SEGI_24894 Sequoiadendron giganteum
SEGI_28065 Sequoiadendron giganteum
SEGI_36049 Sequoiadendron giganteum
SEGI_36881 Sequoiadendron giganteum
SGA_v2.0_scaffold110G31284 Striga asiatica
SHI08441 Sapria himalayana
SHI14211 Sapria himalayana
SHI17929 Sapria himalayana
SHI26603 Sapria himalayana
SHI26604 Sapria himalayana
SHI26605 Sapria himalayana
SHI26606 Sapria himalayana
SHI26607 Sapria himalayana
SHI26608 Sapria himalayana
SHI26609 Sapria himalayana
SHI31429 Sapria himalayana
SMO356G0583 Selaginella moellendorffii
Solyc01g104490.3 Solanum lycopersicum
Sopen01g046990 Solanum pennellii
Sp7g21060 Schrenkiella parvula
TAR381G0620 Trochodendron aralioides
THA.LOC104814230 Tarenaya hassleriana
Thecc.02G041500 Theobroma cacao
Thhalv10024187m.g Eutrema salsugineum
Thhalv10029518m.g Eutrema salsugineum
TPR.G2149 Trifolium pratense
TWI59G0497 Tripterygium wilfordii
unitig_26.g9017 Utricularia gibba
unitig_26.g9018 Utricularia gibba
vmacro01778 Vaccinium macrocarpon
vmacro01779 Vaccinium macrocarpon
vmacro01780 Vaccinium macrocarpon
vmacro01782 Vaccinium macrocarpon
vmacro01784 Vaccinium macrocarpon
vmacro01786 Vaccinium macrocarpon
vmacro18627 Vaccinium macrocarpon
VMungo0251G3589 Vigna mungo
Zm00001eb193470 Zea mays

User provided reference genes

Program Settings