Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p29070 Brassica napus
A07p13710 Brassica napus
A09p40930 Brassica napus
Aa31LG2G10170 Aethionema arabicum
Aa31LG7G7770 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1544 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3491 Anthoceros agrestis
Actinidia00022 Actinidia chinensis
Actinidia01711 Actinidia chinensis
Actinidia27779 Actinidia chinensis
AL1G37650 Arabidopsis lyrata
AL2G16620 Arabidopsis lyrata
Aqoxy3G00960 Aquilegia oxysepala
Aqoxy5G02907 Aquilegia oxysepala
Aqoxy5G02908 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.095X5J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.0K9FD0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3RZB0U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MKS3V3 Arachis hypogaea
AT1G23900 Arabidopsis thaliana
AT1G60070 Arabidopsis thaliana
ATR1149G054 Amborella trichopoda
Atru.chr11.1995 Acer truncatum
AUR62005349 Chenopodium quinoa
AUR62014001 Chenopodium quinoa
BcaB03g14129 Brassica carinata
BcaB04g20249 Brassica carinata
BcaB07g32364 Brassica carinata
BcaB07g32366 Brassica carinata
BcaC06g35060 Brassica carinata
BcaC07g39220 Brassica carinata
BcaC09g49434 Brassica carinata
BolC1t03636H Brassica oleracea
BolC5t31007H Brassica oleracea
BolC7t42538H Brassica oleracea
BolC8t49861H Brassica oleracea
BraA01t02988Z Brassica rapa
BraA07t29122Z Brassica rapa
BraA09t39583Z Brassica rapa
C01p36780 Brassica napus
C05p23090 Brassica napus
C07p20170 Brassica napus
C08p22150 Brassica napus
CAN.G1082.5 Capsicum annuum
CAN.G1082.6 Capsicum annuum
CAN.G205.10 Capsicum annuum
CANSAT01G0657 Cannabis sativa
CARHR024300 Cardamine hirsuta
CARHR052880 Cardamine hirsuta
Carub.0001s2339 Capsella rubella
Carub.0002s0518 Capsella rubella
Ca_04610_v3 Cicer arietinum L.
Ca_22750_v3 Cicer arietinum L.
Ca_22752_v3 Cicer arietinum L.
Ca_22753_v3 Cicer arietinum L.
Ca_28507_v3 Cicer arietinum L.
Ca_29648_v3 Cicer arietinum L.
Ca_29760_v3 Cicer arietinum L.
CBR_g41578 Chara braunii
Cc11_g14450 Coffea canephora
CDE01G0215 Ceratophyllum demersum
CDE02G0944 Ceratophyllum demersum
Cfa009113 Carpinus fangiana
Cfa025901 Carpinus fangiana
Ciclev10030683m.g Citrus clementina
CiPaw.05G147600 Carya illinoinensis
CiPaw.06G073700 Carya illinoinensis
ClCG05G025180 Citrullus lanatus
COL.COLO4_19524 Corchorus olitorius
Cpa.g.sc69.3 Carica papaya
Cpa.g.sc69.4 Carica papaya
Cre16.g676650 Chlamydomonas reinhardtii
CsaV3_5G031710 Cucumis sativus L.
CSS0015451 Camellia sinensis var. sinensis
CSS0016839 Camellia sinensis var. sinensis
CSS0022003 Camellia sinensis var. sinensis
CSS0042322 Camellia sinensis var. sinensis
CSS0044632 Camellia sinensis var. sinensis
DCAR_024137 Daucus carota
DCAR_024138 Daucus carota
DCAR_031089 Daucus carota
Dinv24884 Davidia involucrata
Dinv31017 Davidia involucrata
Duzib251G0010 Durio zibethinus
Duzib268G0481 Durio zibethinus
ECA234G1358 Erigeron canadensis
ECA246G2227 Erigeron canadensis
EL10Ac6g13647 Beta vulgaris
Eucgr.B03952 Eucalyptus grandis
FAN07G2647 Fragaria x ananassa
FAN12G0668 Fragaria x ananassa
FAN17G2555 Fragaria x ananassa
FAN22G0046 Fragaria x ananassa
FvH4_4g34830 Fragaria vesca
Glyma.01G032100 Glycine max
Glyma.02G033300 Glycine max
Glyma.08G289100 Glycine max
Glyma.18G135400 Glycine max
Gohir.A01G141400 Gossypium hirsutum
Gohir.A03G141000 Gossypium hirsutum
Gohir.A12G052100 Gossypium hirsutum
Gohir.D01G132800 Gossypium hirsutum
Gohir.D02G163900 Gossypium hirsutum
Gohir.D12G050500 Gossypium hirsutum
Gorai.002G164400 Gossypium raimondii
Gorai.005G183900 Gossypium raimondii
Gorai.008G053700 Gossypium raimondii
GSVIVG01020209001 Vitis vinifera
HanXRQChr10g0316861 Helianthus annuus
HanXRQChr12g0371361 Helianthus annuus
HanXRQChr12g0383371 Helianthus annuus
HanXRQChr17g0570221 Helianthus annuus
Haze_12151 Corylus avellana
Haze_26819 Corylus avellana
Hma1.2p1_0867F.1_g230390 Hydrangea macrophylla
HPP92_023816 Vanilla planifolia
Hund05973 Selenicereus undatus
Hund25335 Selenicereus undatus
Lalb_Chr05g0217021 Lupinus albus
Lalb_Chr05g0227851 Lupinus albus
Lalb_Chr05g0227871 Lupinus albus
Lalb_Chr09g0326431 Lupinus albus
Lalb_Chr16g0382361 Lupinus albus
Lalb_Chr16g0382371 Lupinus albus
Lj2g0010189 Lotus japonicus
Lj3C1051G4 Lonicera japonica
Lj6C803G6 Lonicera japonica
Lsat_1_v5_gn_2_16661 Lactuca sativa
Lsat_1_v5_gn_2_30601 Lactuca sativa
Lsat_1_v5_gn_3_77260 Lactuca sativa
Lsat_1_v5_gn_4_7040 Lactuca sativa
Lsat_1_v5_gn_4_7061 Lactuca sativa
Lsat_1_v5_gn_5_109620 Lactuca sativa
Lsat_1_v5_gn_5_175420 Lactuca sativa
Lsat_1_v5_gn_5_188721 Lactuca sativa
Lsat_1_v5_gn_5_22660 Lactuca sativa
Lsat_1_v5_gn_5_4720 Lactuca sativa
Lsat_1_v5_gn_6_16240 Lactuca sativa
Lsat_1_v5_gn_6_17021 Lactuca sativa
Lsat_1_v5_gn_6_18541 Lactuca sativa
Manes.01G198500 Manihot esculenta
Manes.05G088300 Manihot esculenta
Mapoly0130s0022 Marchantia polymorpha
MCO03G372 Micromonas commoda
MD13G1089300 Malus domestica
MD16G1089500 Malus domestica
Medtr5g034780 Medicago truncatula
Medtr8g063690 Medicago truncatula
MELO3C012011.2 Cucumis melo
Migut.E00152 Erythranthe guttata
Migut.L01430 Erythranthe guttata
MSTRG.606 Avicennia marina
MSTRG.7881 Avicennia marina
Nitab4.5_0000031g0020 Nicotiana tabacum
Nitab4.5_0000052g0340 Nicotiana tabacum
Nitab4.5_0000925g0040 Nicotiana tabacum
Nitab4.5_0008887g0020 Nicotiana tabacum
Nn3g16925 Nelumbo nucifera
Nn4g22838 Nelumbo nucifera
Oeu001748.1 Olea europaea
Oeu027459.1 Olea europaea
Oeu039476.1 Olea europaea
Os02g0805000 Oryza sativa ssp. japonica
Os06g0167100 Oryza sativa ssp. japonica
Peaxi162Scf00012g00008 Petunia axillaris
Peaxi162Scf00421g00122 Petunia axillaris
PGR119G1498 Punica granatum
PGSC0003DMG400004116 Solanum tuberosum
Phvul.002G072600 Phaseolus vulgaris
Phvul.003G053300 Phaseolus vulgaris
Potri.006G092800 Populus trichocarpa
Potri.016G104700 Populus trichocarpa
Pp3c12_8940 Physcomitrium patens
Pp3c15_650 Physcomitrium patens
Pp3c17_4870 Physcomitrium patens
Pp3c26_590 Physcomitrium patens
Pp3c8_5790 Physcomitrium patens
PRCOL_00002053 Prasinoderma coloniale
Prupe.1G256500 Prunus persica
Psat2g105480 Pisum sativum
Psat4g127600 Pisum sativum
PSO063G4361 Papaver somniferum
PSO832G0605 Papaver somniferum
QL03p061898 Quercus lobata
RcHm_v2.0_Chr4g0408061 Rosa chinensis
RcHm_v2.0_Chr4g0444171 Rosa chinensis
Rhsim12G0047900 Rhododendron simsii
Sabra06G0070500 Salix brachista
SalBow2G0004 Salvia bowleyana
SalBow2G3165 Salvia bowleyana
SalBow8G4564 Salvia bowleyana
Sc04g0009010 Simmondsia chinensis
Sc11g0001280 Simmondsia chinensis
Sed0009259 Sechium edule
Sed0022852 Sechium edule
SEGI_27871 Sequoiadendron giganteum
SGA_v2.0_scaffold165G38266 Striga asiatica
SGA_v2.0_scaffold87G27014 Striga asiatica
SHI27107 Sapria himalayana
SHI27108 Sapria himalayana
SHI27109 Sapria himalayana
SMO347G0230 Selaginella moellendorffii
Solyc04g025870.4 Solanum lycopersicum
Solyc05g005780.3 Solanum lycopersicum
Sopen04g013480 Solanum pennellii
Sopen05g001780 Solanum pennellii
Sp1g21250 Schrenkiella parvula
Sp2g04530 Schrenkiella parvula
TAR371G0396 Trochodendron aralioides
TAR374G1447 Trochodendron aralioides
TAR622G1265 Trochodendron aralioides
TAR629G2238 Trochodendron aralioides
THA.LOC104819479 Tarenaya hassleriana
THA.LOC104822131 Tarenaya hassleriana
Thecc.02G246200 Theobroma cacao
Thhalv10006767m.g Eutrema salsugineum
Thhalv10023264m.g Eutrema salsugineum
TPR.G29172 Trifolium pratense
TPR.G29173 Trifolium pratense
TPR.G31964 Trifolium pratense
TWI18G0795 Tripterygium wilfordii
TWI36G1374 Tripterygium wilfordii
unitig_22.g6932 Utricularia gibba
vmacro01188 Vaccinium macrocarpon
vmacro12520 Vaccinium macrocarpon
vmacro12522 Vaccinium macrocarpon
VMungo0251G0590 Vigna mungo
VMungo0251G3548 Vigna mungo
VMungo0251G3753 Vigna mungo
VMungo0464G0971 Vigna mungo
VMungo0464G1269 Vigna mungo
VMungo0464G1967 Vigna mungo
Zm00001eb192060 Zea mays
Zm00001eb271590 Zea mays
Zm00001eb375520 Zea mays

User provided reference genes

Program Settings