Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p08320 Brassica napus
A02p18290 Brassica napus
A08p19530 Brassica napus
A09p12340 Brassica napus
Aa31LG2G20700 Aethionema arabicum
Aa31LG4G3150 Aethionema arabicum
Aa31LG8G16380 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_369.152 Anthoceros agrestis
Actinidia25227 Actinidia chinensis
Actinidia32170 Actinidia chinensis
Ah.15g092780 Amaranthus hybridus
AL2G32500 Arabidopsis lyrata
AL7G22410 Arabidopsis lyrata
Aqoxy7G00607 Aquilegia oxysepala
Aqoxy7G01127 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2FHK03 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6PF3XA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TTHG3F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZW77VX Arachis hypogaea
AT1G72810 Arabidopsis thaliana
AT4G29840 Arabidopsis thaliana
ATR0051G050 Amborella trichopoda
Atru.chr5.2876 Acer truncatum
AUR62034115 Chenopodium quinoa
AUR62041284 Chenopodium quinoa
BcaB03g12622 Brassica carinata
BcaB05g24778 Brassica carinata
BcaB07g31612 Brassica carinata
BcaC01g01192 Brassica carinata
BcaC03g15421 Brassica carinata
BcaC04g19361 Brassica carinata
BcaC04g22857 Brassica carinata
BcaC09g51762 Brassica carinata
BcaNung06772 Brassica carinata
BolC1t00924H Brassica oleracea
BolC2t09082H Brassica oleracea
BolC3t21220H Brassica oleracea
BolC9t54359H Brassica oleracea
BraA01t00780Z Brassica rapa
BraA02t06868Z Brassica rapa
BraA08t33913Z Brassica rapa
BraA09t36878Z Brassica rapa
C01p09360 Brassica napus
C02p30320 Brassica napus
C03p89070 Brassica napus
C09p14550 Brassica napus
CAN.G825.21 Capsicum annuum
CAN.G862.21 Capsicum annuum
CANSAT56G3231 Cannabis sativa
CANSAT56G3542 Cannabis sativa
CARHR065720 Cardamine hirsuta
CARHR237740 Cardamine hirsuta
Carub.0002s1965 Capsella rubella
Carub.0003s3359 Capsella rubella
Carub.0004s1479 Capsella rubella
Ca_01229_v3 Cicer arietinum L.
Ca_21305_v3 Cicer arietinum L.
Ca_26956_v3 Cicer arietinum L.
CBR_g24026 Chara braunii
CBR_g24030 Chara braunii
Cc04_g01530 Coffea canephora
Cc06_g11830 Coffea canephora
CDE05G0453 Ceratophyllum demersum
CDE05G1376 Ceratophyllum demersum
Cfa003041 Carpinus fangiana
Cfa003550 Carpinus fangiana
Ciclev10008029m.g Citrus clementina
Ciclev10025353m.g Citrus clementina
CiPaw.01G221400 Carya illinoinensis
CiPaw.02G137400 Carya illinoinensis
ClCG03G015330 Citrullus lanatus
ClCG11G001600 Citrullus lanatus
COL.COLO4_18149 Corchorus olitorius
COL.COLO4_30721 Corchorus olitorius
Cpa.g.sc25.90 Carica papaya
Cpa.g.sc28.111 Carica papaya
Cre10.g451900 Chlamydomonas reinhardtii
CsaV3_1G040720 Cucumis sativus L.
CsaV3_2G001290 Cucumis sativus L.
CSS0008835 Camellia sinensis var. sinensis
CSS0024216 Camellia sinensis var. sinensis
DCAR_007633 Daucus carota
Dinv30368 Davidia involucrata
Dinv37886 Davidia involucrata
Dinv42354 Davidia involucrata
Duzib168G0291 Durio zibethinus
Duzib187G0335 Durio zibethinus
Duzib235G0280 Durio zibethinus
ECA246G2497 Erigeron canadensis
EL10Ac7g17640 Beta vulgaris
Eucgr.C00846 Eucalyptus grandis
FAN05G2090 Fragaria x ananassa
FAN14G3316 Fragaria x ananassa
FAN18G0462 Fragaria x ananassa
FAN19G0473 Fragaria x ananassa
FAN23G2463 Fragaria x ananassa
FAN26G1431 Fragaria x ananassa
FAN26G2727 Fragaria x ananassa
FAN28G0328 Fragaria x ananassa
FvH4_1g08110 Fragaria vesca
FvH4_6g34290 Fragaria vesca
Glyma.13G347100 Glycine max
Glyma.15G027000 Glycine max
Glyma.17G052000 Glycine max
Gohir.A05G032400 Gossypium hirsutum
Gohir.A06G074401 Gossypium hirsutum
Gohir.A06G074501 Gossypium hirsutum
Gohir.A10G057100 Gossypium hirsutum
Gohir.D05G033800 Gossypium hirsutum
Gohir.D06G073200 Gossypium hirsutum
Gohir.D10G058800 Gossypium hirsutum
Gorai.009G034200 Gossypium raimondii
Gorai.010G085500 Gossypium raimondii
Gorai.011G062900 Gossypium raimondii
GSVIVG01015147001 Vitis vinifera
HanXRQChr02g0031501 Helianthus annuus
HanXRQChr02g0042291 Helianthus annuus
HanXRQChr12g0353981 Helianthus annuus
HanXRQChr12g0354541 Helianthus annuus
HanXRQChr12g0359681 Helianthus annuus
HanXRQChr14g0427971 Helianthus annuus
HanXRQChr15g0481951 Helianthus annuus
Haze_15998 Corylus avellana
Haze_25955 Corylus avellana
Hma1.2p1_0169F.1_g074780 Hydrangea macrophylla
Hma1.2p1_0291F.1_g115320 Hydrangea macrophylla
HPP92_008204 Vanilla planifolia
HPP92_023121 Vanilla planifolia
Lalb_Chr07g0181011 Lupinus albus
Lalb_Chr12g0199971 Lupinus albus
Lalb_Chr14g0372641 Lupinus albus
Lalb_Chr24g0396581 Lupinus albus
Lj3g0023880 Lotus japonicus
Lj4g0026350 Lotus japonicus
Lj4P288T14 Lonicera japonica
Lj9P521T29 Lonicera japonica
Lsat_1_v5_gn_5_141661 Lactuca sativa
Lsat_1_v5_gn_5_21680 Lactuca sativa
Manes.11G022700 Manihot esculenta
Manes.16G098600 Manihot esculenta
Mapoly0035s0120 Marchantia polymorpha
MBI18_g29373_MAGBIO Magnolia biondii
MCO14G156 Micromonas commoda
MD09G1187000 Malus domestica
MD15G1212700 Malus domestica
MD17G1171300 Malus domestica
Medtr2g099510 Medicago truncatula
Medtr4g125700 Medicago truncatula
MELO3C004640.2 Cucumis melo
MELO3C015500.2 Cucumis melo
MELO3C019203.2 Cucumis melo
Migut.I01056 Erythranthe guttata
Migut.L01535 Erythranthe guttata
MSTRG.10967 Avicennia marina
MSTRG.22558 Avicennia marina
Nitab4.5_0002795g0060 Nicotiana tabacum
Nitab4.5_0003493g0070 Nicotiana tabacum
Nitab4.5_0007560g0020 Nicotiana tabacum
Nitab4.5_0011681g0010 Nicotiana tabacum
Nitab4.5_0011896g0010 Nicotiana tabacum
Nn6g35561 Nelumbo nucifera
Nn8g38753 Nelumbo nucifera
Oeu007570.1 Olea europaea
Oeu051309.1 Olea europaea
Oeu058714.2 Olea europaea
Os01g0693800 Oryza sativa ssp. japonica
Os05g0549700 Oryza sativa ssp. japonica
Peaxi162Scf00038g01712 Petunia axillaris
Peaxi162Scf00207g01429 Petunia axillaris
Peaxi162Scf00724g00016 Petunia axillaris
PGR102G1947 Punica granatum
PGR142G1661 Punica granatum
PGSC0003DMG400002486 Solanum tuberosum
PGSC0003DMG400004886 Solanum tuberosum
Phvul.003G133700 Phaseolus vulgaris
Phvul.005G156300 Phaseolus vulgaris
Potri.001G199100 Populus trichocarpa
Potri.003G033200 Populus trichocarpa
Pp3c20_7040 Physcomitrium patens
Pp3c23_19710 Physcomitrium patens
Pp3c24_17380 Physcomitrium patens
Pp3c8_16970 Physcomitrium patens
PRCOL_00000666 Prasinoderma coloniale
Prupe.3G044400 Prunus persica
Psat3g073640 Pisum sativum
Psat4g016840 Pisum sativum
Psat5g291080 Pisum sativum
PSO478G2384 Papaver somniferum
PSO782G3829 Papaver somniferum
QL02p061713 Quercus lobata
QL05p009200 Quercus lobata
RcHm_v2.0_Chr2g0094161 Rosa chinensis
RcHm_v2.0_Chr2g0144621 Rosa chinensis
Rhsim05G0013800 Rhododendron simsii
Rhsim08G0236700 Rhododendron simsii
Sabra01G0156100 Salix brachista
Sabra03G0019200 Salix brachista
Sc02g0004340 Simmondsia chinensis
Sed0003791 Sechium edule
Sed0012247 Sechium edule
Sed0018623 Sechium edule
Sed0020651 Sechium edule
SEGI_25214 Sequoiadendron giganteum
SGA_v2.0_scaffold122G33349 Striga asiatica
SGA_v2.0_scaffold132G34564 Striga asiatica
SGA_v2.0_scaffold71G23836 Striga asiatica
SGA_v2.0_scaffold87G26983 Striga asiatica
SHI03763 Sapria himalayana
SMO114G0088 Selaginella moellendorffii
Solyc03g121910.1 Solanum lycopersicum
Solyc06g062840.4 Solanum lycopersicum
Sopen03g040730 Solanum pennellii
Sopen06g022300 Solanum pennellii
Sp3g32740 Schrenkiella parvula
Sp5g27850 Schrenkiella parvula
Sp7g27650 Schrenkiella parvula
TAR623G0996 Trochodendron aralioides
TAR624G0265 Trochodendron aralioides
TAR636G1280 Trochodendron aralioides
THA.LOC104820013 Tarenaya hassleriana
Thecc.06G116900 Theobroma cacao
Thecc.09G082400 Theobroma cacao
Thhalv10018411m.g Eutrema salsugineum
Thhalv10024890m.g Eutrema salsugineum
TPR.G6603 Trifolium pratense
TPR.G9441 Trifolium pratense
TWI32G1360 Tripterygium wilfordii
unitig_52.g17098 Utricularia gibba
unitig_62.g23761 Utricularia gibba
vmacro17167 Vaccinium macrocarpon
vmacro22220 Vaccinium macrocarpon
VMungo1080G1021 Vigna mungo
VMungo1215G0297 Vigna mungo
Zm00001eb156020 Zea mays
Zm00001eb284240 Zea mays
Zm00001eb294790 Zea mays

User provided reference genes

Program Settings