Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p24090 Brassica napus
A06p17480 Brassica napus
A07p42650 Brassica napus
Aa31LG1G24980 Aethionema arabicum
Aa31LG4G7100 Aethionema arabicum
Aa31LG7G5460 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2144 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2493 Anthoceros agrestis
Actinidia29505 Actinidia chinensis
Actinidia29506 Actinidia chinensis
Actinidia29507 Actinidia chinensis
Actinidia35899 Actinidia chinensis
Ah.05g169370 Amaranthus hybridus
Ah.05g169380 Amaranthus hybridus
Ah.05g169410 Amaranthus hybridus
AL1G34550 Arabidopsis lyrata
AL2G37220 Arabidopsis lyrata
AL4G41840 Arabidopsis lyrata
AL7G19660 Arabidopsis lyrata
Aqoxy2G04084 Aquilegia oxysepala
Aqoxy5G02310 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2984HV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8DC0EJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CAZS7V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FXEC3Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WW3ZBU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WY7NKY Arachis hypogaea
AT1G21440 Arabidopsis thaliana
AT1G77060 Arabidopsis thaliana
AT2G43180 Arabidopsis thaliana
ATR0743G051 Amborella trichopoda
ATR0987G007 Amborella trichopoda
Atru.chr3.1642 Acer truncatum
AUR62013470 Chenopodium quinoa
AUR62013471 Chenopodium quinoa
AUR62013472 Chenopodium quinoa
AUR62013473 Chenopodium quinoa
AUR62013474 Chenopodium quinoa
AUR62026799 Chenopodium quinoa
AUR62026800 Chenopodium quinoa
AUR62026801 Chenopodium quinoa
AUR62026802 Chenopodium quinoa
AUR62042874 Chenopodium quinoa
AUR62043293 Chenopodium quinoa
BcaB01g03406 Brassica carinata
BcaB07g32132 Brassica carinata
BcaB07g32134 Brassica carinata
BcaC01g05252 Brassica carinata
BcaC05g26052 Brassica carinata
BcaC08g47205 Brassica carinata
BolC3t15230H Brassica oleracea
BolC5t30726H Brassica oleracea
BolC6t40146H Brassica oleracea
BraA03t11619Z Brassica rapa
BraA06t24844Z Brassica rapa
BraA07t31787Z Brassica rapa
C03p28680 Brassica napus
C05p20300 Brassica napus
C06p51240 Brassica napus
CAN.G1921.5 Capsicum annuum
CANSAT78G0601 Cannabis sativa
CANSAT78G0916 Cannabis sativa
CANSAT78G1318 Cannabis sativa
CANSAT78G1332 Cannabis sativa
CANSAT78G1494 Cannabis sativa
CARHR021820 Cardamine hirsuta
CARHR138240 Cardamine hirsuta
Carub.0001s2085 Capsella rubella
Carub.0004s2565 Capsella rubella
Ca_25795_v3 Cicer arietinum L.
CBR_g31672 Chara braunii
CBR_g48002 Chara braunii
CBR_g57530 Chara braunii
CBR_g58653 Chara braunii
Cc03_g11220 Coffea canephora
CDE02G1283 Ceratophyllum demersum
CDE06G1346 Ceratophyllum demersum
CDE08G0185 Ceratophyllum demersum
CDE11G0927 Ceratophyllum demersum
Cfa015789 Carpinus fangiana
Cfa023743 Carpinus fangiana
Cfa025902 Carpinus fangiana
Ciclev10003357m.g Citrus clementina
Ciclev10019835m.g Citrus clementina
CiPaw.01G105100 Carya illinoinensis
ClCG07G016570 Citrullus lanatus
COL.COLO4_24361 Corchorus olitorius
COL.COLO4_33820 Corchorus olitorius
Cpa.g.c44811 Carica papaya
Cpa.g.sc26.98 Carica papaya
Cpa.g.sc71.49 Carica papaya
Cre03.g149250 Chlamydomonas reinhardtii
Cre03.g200250 Chlamydomonas reinhardtii
Cre04.g224100 Chlamydomonas reinhardtii
CsaV3_4G003700 Cucumis sativus L.
CSS0013968 Camellia sinensis var. sinensis
CSS0017794 Camellia sinensis var. sinensis
DCAR_023911 Daucus carota
Dinv25789 Davidia involucrata
Dinv44222 Davidia involucrata
Duzib116G0925 Durio zibethinus
Duzib151G0937 Durio zibethinus
EL10Ac1g01422 Beta vulgaris
EL10Ac1g01424 Beta vulgaris
EL10Ac1g01425 Beta vulgaris
EL10Ac1g01428 Beta vulgaris
EL10Ac5g11409 Beta vulgaris
EL10Ac5g11603 Beta vulgaris
Eucgr.H00431 Eucalyptus grandis
Eucgr.L00405 Eucalyptus grandis
FAN12G2231 Fragaria x ananassa
FAN12G2375 Fragaria x ananassa
FAN17G1305 Fragaria x ananassa
FAN22G1163 Fragaria x ananassa
FvH4_4g11620 Fragaria vesca
Glyma.08G362200 Glycine max
Glyma.18G299600 Glycine max
Glyma.18G299700 Glycine max
Gohir.A02G068203 Gossypium hirsutum
Gohir.A09G210300 Gossypium hirsutum
Gohir.A13G111000 Gossypium hirsutum
Gohir.D02G074500 Gossypium hirsutum
Gohir.D09G203700 Gossypium hirsutum
Gorai.005G083900 Gossypium raimondii
Gorai.006G227600 Gossypium raimondii
GSVIVG01013539001 Vitis vinifera
HanXRQChr07g0186741 Helianthus annuus
Haze_00704 Corylus avellana
Hma1.2p1_1187F.1_g265160 Hydrangea macrophylla
HPP92_012786 Vanilla planifolia
HPP92_019396 Vanilla planifolia
Hund04648 Selenicereus undatus
Hund04710 Selenicereus undatus
Hund04712 Selenicereus undatus
Hund10618 Selenicereus undatus
Hund17381 Selenicereus undatus
Hund26740 Selenicereus undatus
Hund26741 Selenicereus undatus
Hund26749 Selenicereus undatus
Hund26750 Selenicereus undatus
Hund26751 Selenicereus undatus
Hund26752 Selenicereus undatus
Hund26753 Selenicereus undatus
Hund27751 Selenicereus undatus
Hund27752 Selenicereus undatus
Lalb_Chr04g0257271 Lupinus albus
Lj1g0003603 Lotus japonicus
Lj1g0006433 Lotus japonicus
Lj1g0012299 Lotus japonicus
Lj6A64G34 Lonicera japonica
Lj7C362T2 Lonicera japonica
Lsat_1_v5_gn_6_56581 Lactuca sativa
Manes.02G173100 Manihot esculenta
Manes.11G114950 Manihot esculenta
Mapoly0016s0095 Marchantia polymorpha
MBI06_g27433_MAGBIO Magnolia biondii
MBI11_g02541_MAGBIO Magnolia biondii
MBI11_g46797_MAGBIO Magnolia biondii
MCO06G178 Micromonas commoda
MCO16G081 Micromonas commoda
MCO16G350 Micromonas commoda
MD04G1031000 Malus domestica
Medtr3g103430 Medicago truncatula
Medtr3g110560 Medicago truncatula
Medtr7g005745 Medicago truncatula
Medtr7g006100 Medicago truncatula
Medtr7g006260 Medicago truncatula
MELO3C017685.2 Cucumis melo
Migut.N00790 Erythranthe guttata
MSTRG.1386 Avicennia marina
MSTRG.25339 Avicennia marina
MSTRG.9768 Avicennia marina
Nitab4.5_0000582g0050 Nicotiana tabacum
Nitab4.5_0001087g0040 Nicotiana tabacum
Nitab4.5_0001087g0050 Nicotiana tabacum
Nitab4.5_0004719g0060 Nicotiana tabacum
Nn1g09744 Nelumbo nucifera
Nn5g28542 Nelumbo nucifera
Oeu050360.2 Olea europaea
Os04g0386600 Oryza sativa ssp. japonica
Os04g0504600 Oryza sativa ssp. japonica
Peaxi162Scf00353g00744 Petunia axillaris
PGR044G2690 Punica granatum
PGR142G4264 Punica granatum
PGSC0003DMG400023455 Solanum tuberosum
Phvul.008G002900 Phaseolus vulgaris
Phvul.008G003000 Phaseolus vulgaris
Potri.002G073600 Populus trichocarpa
Potri.002G231000 Populus trichocarpa
Pp3c2_8330 Physcomitrium patens
PRCOL_00001770 Prasinoderma coloniale
PRCOL_00006864 Prasinoderma coloniale
PRCOL_00006997 Prasinoderma coloniale
Prupe.1G182700 Prunus persica
Psat3g207360 Pisum sativum
Psat3g207400 Pisum sativum
PSO017G3444 Papaver somniferum
PSO675G2488 Papaver somniferum
QL10p046359 Quercus lobata
RcHm_v2.0_Chr4g0408741 Rosa chinensis
RcHm_v2.0_Chr4g0408751 Rosa chinensis
RcHm_v2.0_Chr4g0408761 Rosa chinensis
Rhsim09G0033400 Rhododendron simsii
Rhsim11G0076700 Rhododendron simsii
Sabra02G0176200 Salix brachista
Sc07g0007200 Simmondsia chinensis
Sed0018165 Sechium edule
Sed0020117 Sechium edule
SEGI_19355 Sequoiadendron giganteum
SEGI_23683 Sequoiadendron giganteum
SMO347G0492 Selaginella moellendorffii
Solyc05g056270.3 Solanum lycopersicum
Sopen05g034660 Solanum pennellii
Sp1g18980 Schrenkiella parvula
Sp4g25300 Schrenkiella parvula
Sp5g32200 Schrenkiella parvula
TAR381G0715 Trochodendron aralioides
TAR633G1340 Trochodendron aralioides
THA.LOC104803535 Tarenaya hassleriana
THA.LOC104804862 Tarenaya hassleriana
THA.LOC104824677 Tarenaya hassleriana
Thecc.04G182400 Theobroma cacao
Thecc.08G140500 Theobroma cacao
Thhalv10000228m.g Eutrema salsugineum
Thhalv10001429m.g Eutrema salsugineum
Thhalv10008020m.g Eutrema salsugineum
Thhalv10018825m.g Eutrema salsugineum
TPR.G15625 Trifolium pratense
TWI38G0628 Tripterygium wilfordii
unitig_736.g22470 Utricularia gibba
vmacro00578 Vaccinium macrocarpon
vmacro00579 Vaccinium macrocarpon
vmacro00581 Vaccinium macrocarpon
VMungo1383G0832 Vigna mungo
VMungo1383G2368 Vigna mungo
Zm00001eb085500 Zea mays
Zm00001eb426990 Zea mays

User provided reference genes

Program Settings