Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p01330 Brassica napus
A10p32420 Brassica napus
Aa31LG1G21540 Aethionema arabicum
Actinidia05452 Actinidia chinensis
Actinidia08431 Actinidia chinensis
AL3G21290 Arabidopsis lyrata
AL6G13190 Arabidopsis lyrata
Aqoxy4G02882 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4F3XVH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.69G02P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.89A9VD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9T2CEP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K09AJ1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TU7PE1 Arachis hypogaea
AT3G10000 Arabidopsis thaliana
AT5G03680 Arabidopsis thaliana
ATR0820G204 Amborella trichopoda
Atru.chr12.971 Acer truncatum
Atru.chr8.1626 Acer truncatum
AUR62033561 Chenopodium quinoa
AUR62041433 Chenopodium quinoa
BcaB01g05794 Brassica carinata
BcaB01g05808 Brassica carinata
BcaB05g21819 Brassica carinata
BcaC03g12992 Brassica carinata
BcaC03g13125 Brassica carinata
BcaC03g13126 Brassica carinata
BcaC06g32077 Brassica carinata
BolC2t06109H Brassica oleracea
BolC2t06166H Brassica oleracea
BolC2t06169H Brassica oleracea
BolC2t06170H Brassica oleracea
BolC3t12721H Brassica oleracea
BolC9t60059H Brassica oleracea
BraA02t04777Z Brassica rapa
BraA03t09513Z Brassica rapa
BraA10t45282Z Brassica rapa
C02p01190 Brassica napus
C03p01680 Brassica napus
C09p73240 Brassica napus
CAN.G1138.20 Capsicum annuum
CAN.G824.13 Capsicum annuum
CANSAT56G4479 Cannabis sativa
CANSAT80G0790 Cannabis sativa
CARHR084500 Cardamine hirsuta
CARHR209620 Cardamine hirsuta
Carub.0003s0910 Capsella rubella
Carub.0006s0259 Capsella rubella
Ca_08969_v3 Cicer arietinum L.
Ca_10494_v3 Cicer arietinum L.
Ca_11628_v3 Cicer arietinum L.
Cc06_g05330 Coffea canephora
CDE02G1055 Ceratophyllum demersum
CDE08G0917 Ceratophyllum demersum
Cfa011227 Carpinus fangiana
Cfa016539 Carpinus fangiana
Ciclev10011338m.g Citrus clementina
Ciclev10031295m.g Citrus clementina
CiPaw.09G009200 Carya illinoinensis
CiPaw.10G005900 Carya illinoinensis
CiPaw.13G036400 Carya illinoinensis
CiPaw.14G028700 Carya illinoinensis
ClCG05G021590 Citrullus lanatus
ClCG10G019270 Citrullus lanatus
COL.COLO4_29809 Corchorus olitorius
COL.COLO4_33898 Corchorus olitorius
Cpa.g.sc128.45 Carica papaya
Cpa.g.sc5.72 Carica papaya
CsaV3_3G036920 Cucumis sativus L.
CsaV3_5G035640 Cucumis sativus L.
CSS0006260 Camellia sinensis var. sinensis
CSS0019399 Camellia sinensis var. sinensis
CSS0040987 Camellia sinensis var. sinensis
CSS0048056 Camellia sinensis var. sinensis
CSS0048479 Camellia sinensis var. sinensis
DCAR_013364 Daucus carota
Dinv19834 Davidia involucrata
Dinv20821 Davidia involucrata
Dinv21248 Davidia involucrata
Dinv30653 Davidia involucrata
Duzib106G0295 Durio zibethinus
Duzib106G1498 Durio zibethinus
Duzib128G0826 Durio zibethinus
Duzib128G1969 Durio zibethinus
ECA232G1858 Erigeron canadensis
ECA233G2613 Erigeron canadensis
ECA248G2929 Erigeron canadensis
EL10Ac7g16982 Beta vulgaris
Eucgr.J01012 Eucalyptus grandis
Eucgr.K02072 Eucalyptus grandis
FAN02G0026 Fragaria x ananassa
FAN03G3256 Fragaria x ananassa
FAN05G4738 Fragaria x ananassa
FAN05G5125 Fragaria x ananassa
FAN06G3179 Fragaria x ananassa
FAN09G0013 Fragaria x ananassa
FAN10G2220 Fragaria x ananassa
FAN14G2297 Fragaria x ananassa
FvH4_6g17990 Fragaria vesca
FvH4_7g05970 Fragaria vesca
Glyma.03G191700 Glycine max
Glyma.10G066800 Glycine max
Glyma.10G202300 Glycine max
Glyma.19G192300 Glycine max
Glyma.20G188100 Glycine max
Gohir.A01G139000 Gossypium hirsutum
Gohir.A01G208700 Gossypium hirsutum
Gohir.A05G288300 Gossypium hirsutum
Gohir.A13G011500 Gossypium hirsutum
Gohir.D01G128900 Gossypium hirsutum
Gohir.D01G197800 Gossypium hirsutum
Gohir.D05G289500 Gossypium hirsutum
Gohir.D13G012200 Gossypium hirsutum
Gorai.002G159600 Gossypium raimondii
Gorai.002G242000 Gossypium raimondii
Gorai.009G304600 Gossypium raimondii
Gorai.013G013400 Gossypium raimondii
GSVIVG01033792001 Vitis vinifera
GSVIVG01034705001 Vitis vinifera
HanXRQChr01g0028921 Helianthus annuus
HanXRQChr11g0351351 Helianthus annuus
HanXRQChr12g0382151 Helianthus annuus
HanXRQChr15g0491601 Helianthus annuus
Haze_02601 Corylus avellana
Haze_19544 Corylus avellana
Hma1.2p1_0084F.1_g043320 Hydrangea macrophylla
HPP92_001981 Vanilla planifolia
HPP92_002059 Vanilla planifolia
Hund04073 Selenicereus undatus
Hund19281 Selenicereus undatus
Lalb_Chr02g0151381 Lupinus albus
Lalb_Chr02g0155191 Lupinus albus
Lalb_Chr06g0173331 Lupinus albus
Lalb_Chr20g0112171 Lupinus albus
Lalb_Chr21g0315631 Lupinus albus
Lalb_Chr25g0288621 Lupinus albus
Lj1g0020166 Lotus japonicus
Lj2A130G47 Lonicera japonica
Lj3A931G51 Lonicera japonica
Lj5g0015082 Lotus japonicus
Lj5g0026113 Lotus japonicus
Lsat_1_v5_gn_0_16941 Lactuca sativa
Lsat_1_v5_gn_1_50241 Lactuca sativa
Lsat_1_v5_gn_6_70821 Lactuca sativa
Manes.07G000300 Manihot esculenta
Manes.08G021500 Manihot esculenta
Manes.10G055600 Manihot esculenta
MD02G1247700 Malus domestica
MD07G1068800 Malus domestica
MD12G1018900 Malus domestica
MD14G1016900 Malus domestica
Medtr1g060990 Medicago truncatula
Medtr1g492790 Medicago truncatula
MELO3C009440.2 Cucumis melo
MELO3C012365.2 Cucumis melo
Migut.J00979 Erythranthe guttata
Migut.L01760 Erythranthe guttata
MSTRG.19234 Avicennia marina
MSTRG.26649 Avicennia marina
MSTRG.5812 Avicennia marina
Nitab4.5_0000132g0140 Nicotiana tabacum
Nitab4.5_0001969g0020 Nicotiana tabacum
Nitab4.5_0004567g0010 Nicotiana tabacum
Nitab4.5_0005517g0010 Nicotiana tabacum
Nn2g14017 Nelumbo nucifera
Nn4g26560 Nelumbo nucifera
Nn6g35031 Nelumbo nucifera
Oeu018721.1 Olea europaea
Oeu033827.1 Olea europaea
Oeu033828.1 Olea europaea
Oeu039820.1 Olea europaea
Oeu052894.1 Olea europaea
Peaxi162Scf00068g01410 Petunia axillaris
Peaxi162Scf00110g02110 Petunia axillaris
PGR044G0157 Punica granatum
PGR142G0251 Punica granatum
PGSC0003DMG400002710 Solanum tuberosum
PGSC0003DMG400028172 Solanum tuberosum
Phvul.001G187000 Phaseolus vulgaris
Phvul.007G104900 Phaseolus vulgaris
Phvul.007G222800 Phaseolus vulgaris
Potri.008G025600 Populus trichocarpa
Potri.010G235000 Populus trichocarpa
Prupe.2G086500 Prunus persica
Prupe.7G116400 Prunus persica
Psat3g035400 Pisum sativum
Psat6g079400 Pisum sativum
Psat6g176560 Pisum sativum
PSO339G2179 Papaver somniferum
PSO384G0867 Papaver somniferum
QL04p041266 Quercus lobata
QL06p040439 Quercus lobata
QL07p040277 Quercus lobata
RcHm_v2.0_Chr1g0333231 Rosa chinensis
RcHm_v2.0_Chr3g0472271 Rosa chinensis
Rhsim03G0080600 Rhododendron simsii
Sabra10G0182300 Salix brachista
SalBow5G4730 Salvia bowleyana
Sc02g0001110 Simmondsia chinensis
Sc20g0006100 Simmondsia chinensis
Sed0000339 Sechium edule
Sed0012387 Sechium edule
Sed0025012 Sechium edule
SGA_v2.0_scaffold184G39931 Striga asiatica
SGA_v2.0_scaffold35G14094 Striga asiatica
SGA_v2.0_scaffold40G15390 Striga asiatica
SGA_v2.0_scaffold75G24793 Striga asiatica
SHI21276 Sapria himalayana
Solyc09g009250.3 Solanum lycopersicum
Sopen09g003980 Solanum pennellii
Sopen10g033040 Solanum pennellii
Sp6g39040 Schrenkiella parvula
TAR369G0986 Trochodendron aralioides
TAR369G1131 Trochodendron aralioides
TAR633G0324 Trochodendron aralioides
TAR636G3572 Trochodendron aralioides
THA.LOC104816368 Tarenaya hassleriana
THA.LOC104826932 Tarenaya hassleriana
Thecc.05G081700 Theobroma cacao
Thecc.10G110100 Theobroma cacao
Thhalv10013048m.g Eutrema salsugineum
TPR.G10242 Trifolium pratense
TPR.G2529 Trifolium pratense
TPR.G5652 Trifolium pratense
TWI74G1454 Tripterygium wilfordii
TWI77G0340 Tripterygium wilfordii
unitig_578.g15767 Utricularia gibba
unitig_746.g26771 Utricularia gibba
unitig_746.g26772 Utricularia gibba
unitig_8.g4141 Utricularia gibba
unitig_8.g4725 Utricularia gibba
unitig_899.g15207 Utricularia gibba
vmacro07359 Vaccinium macrocarpon
VMungo0720G0816 Vigna mungo
VMungo0720G1455 Vigna mungo
VMungo1383G1393 Vigna mungo
Zm00001eb427630 Zea mays

User provided reference genes

Program Settings