Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p34650 Brassica napus
A05p00980 Brassica napus
A06p01970 Brassica napus
Aa31LG10G2690 Aethionema arabicum
Aa31LG1G28190 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2362 Anthoceros agrestis
Actinidia21683 Actinidia chinensis
Actinidia28081 Actinidia chinensis
Actinidia28509 Actinidia chinensis
Actinidia32728 Actinidia chinensis
Ah.05g178890 Amaranthus hybridus
AL1G60390 Arabidopsis lyrata
AL4G46290 Arabidopsis lyrata
AL5G20600 Arabidopsis lyrata
Aqoxy5G04348 Aquilegia oxysepala
Aqoxy7G03826 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1X5T6L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5DA507 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5LR307 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KHD191 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L2XBQ2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L4UE4C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UG1GNN Arachis hypogaea
AT1G52220 Arabidopsis thaliana
AT2G46820 Arabidopsis thaliana
ATR0661G555 Amborella trichopoda
Atru.chr1.3339 Acer truncatum
Atru.chr5.776 Acer truncatum
AUR62011665 Chenopodium quinoa
AUR62016487 Chenopodium quinoa
BcaC02g07001 Brassica carinata
BcaC08g43378 Brassica carinata
BcaNung03900 Brassica carinata
BolC4t21765H Brassica oleracea
BolC4t28733H Brassica oleracea
BolC6t35834H Brassica oleracea
BraA04t18923Z Brassica rapa
BraA05t19098Z Brassica rapa
BraA06t23413Z Brassica rapa
C04p01120 Brassica napus
C06p07450 Brassica napus
CAN.G1150.7 Capsicum annuum
CAN.G1152.7 Capsicum annuum
CAN.G292.14 Capsicum annuum
CANSAT56G2785 Cannabis sativa
CARHR042350 Cardamine hirsuta
CARHR142160 Cardamine hirsuta
Carub.0001s4119 Capsella rubella
Carub.0004s2953 Capsella rubella
Ca_09551_v3 Cicer arietinum L.
Ca_20372_v3 Cicer arietinum L.
Ca_23490_v3 Cicer arietinum L.
Cc02_g39980 Coffea canephora
Cc04_g03020 Coffea canephora
CDE04G3443 Ceratophyllum demersum
CDE12G0936 Ceratophyllum demersum
Cfa003728 Carpinus fangiana
Ciclev10022571m.g Citrus clementina
Ciclev10026714m.g Citrus clementina
CiPaw.01G083600 Carya illinoinensis
CiPaw.01G235500 Carya illinoinensis
ClCG06G002300 Citrullus lanatus
COL.COLO4_23055 Corchorus olitorius
COL.COLO4_30438 Corchorus olitorius
Cpa.g.sc57.84 Carica papaya
CsaV3_6G008350 Cucumis sativus L.
CsaV3_7G033430 Cucumis sativus L.
CSS0002984 Camellia sinensis var. sinensis
CSS0007900 Camellia sinensis var. sinensis
CSS0009229 Camellia sinensis var. sinensis
CSS0033442 Camellia sinensis var. sinensis
CSS0043485 Camellia sinensis var. sinensis
DCAR_002975 Daucus carota
Dinv30479 Davidia involucrata
Dinv32650 Davidia involucrata
Dinv34260 Davidia involucrata
Dinv38018 Davidia involucrata
Duzib133G1558 Durio zibethinus
Duzib138G0635 Durio zibethinus
Duzib192G0225 Durio zibethinus
ECA236G4382 Erigeron canadensis
EL10Ac1g00180 Beta vulgaris
EL10Ac9g22033 Beta vulgaris
Eucgr.E00015 Eucalyptus grandis
Eucgr.J02957 Eucalyptus grandis
FAN01G2307 Fragaria x ananassa
FAN03G1202 Fragaria x ananassa
FAN04G2611 Fragaria x ananassa
FAN06G3193 Fragaria x ananassa
FAN06G4190 Fragaria x ananassa
FAN08G3370 Fragaria x ananassa
FAN10G1074 Fragaria x ananassa
FAN10G4363 Fragaria x ananassa
FAN13G0902 Fragaria x ananassa
FAN18G3220 Fragaria x ananassa
FvH4_5g26750 Fragaria vesca
FvH4_7g17800 Fragaria vesca
Glyma.03G261500 Glycine max
Glyma.07G019400 Glycine max
Glyma.07G049000 Glycine max
Glyma.08G204600 Glycine max
Glyma.16G017600 Glycine max
Glyma.19G260600 Glycine max
Gohir.A10G081400 Gossypium hirsutum
Gohir.A11G101600 Gossypium hirsutum
Gohir.D10G070000 Gossypium hirsutum
Gohir.D11G106100 Gossypium hirsutum
Gorai.007G113600 Gossypium raimondii
Gorai.011G074300 Gossypium raimondii
GSVIVG01017074001 Vitis vinifera
GSVIVG01027447001 Vitis vinifera
HanXRQChr04g0096171 Helianthus annuus
HanXRQChr04g0119751 Helianthus annuus
HanXRQChr06g0183421 Helianthus annuus
Haze_15741 Corylus avellana
Haze_16358 Corylus avellana
Hma1.2p1_0074F.1_g038805 Hydrangea macrophylla
Hma1.2p1_3000F.1_g331520 Hydrangea macrophylla
HPP92_022255 Vanilla planifolia
HPP92_022258 Vanilla planifolia
HPP92_022265 Vanilla planifolia
Hund00767 Selenicereus undatus
Hund06631 Selenicereus undatus
Hund16756 Selenicereus undatus
Lalb_Chr04g0254131 Lupinus albus
Lalb_Chr18g0044731 Lupinus albus
Lalb_Chr25g0279981 Lupinus albus
Lj1g0018635 Lotus japonicus
Lj3g0001792 Lotus japonicus
Lj3g0027497 Lotus japonicus
Lsat_1_v5_gn_1_35260 Lactuca sativa
Lsat_1_v5_gn_7_115161 Lactuca sativa
Manes.01G239100 Manihot esculenta
Manes.05G015700 Manihot esculenta
Manes.11G037700 Manihot esculenta
Mapoly0091s0069 Marchantia polymorpha
Mapoly0091s0076 Marchantia polymorpha
MBI04_g09597_MAGBIO Magnolia biondii
MBI12_g20607_MAGBIO Magnolia biondii
MCO01G573 Micromonas commoda
MD01G1089400 Malus domestica
MD07G1160900 Malus domestica
MD09G1209100 Malus domestica
Medtr4g013200 Medicago truncatula
Medtr7g118290 Medicago truncatula
Medtr8g024180 Medicago truncatula
MELO3C022303.2 Cucumis melo
MELO3C024257.2 Cucumis melo
Migut.B01923 Erythranthe guttata
Migut.D01016 Erythranthe guttata
MSTRG.17384 Avicennia marina
MSTRG.4739 Avicennia marina
Nitab4.5_0000351g0110 Nicotiana tabacum
Nitab4.5_0002053g0100 Nicotiana tabacum
Nitab4.5_0002892g0010 Nicotiana tabacum
Nitab4.5_0003351g0010 Nicotiana tabacum
Nn1g00455 Nelumbo nucifera
Nn2g11683 Nelumbo nucifera
Nn3g18086 Nelumbo nucifera
Oeu064416.2 Olea europaea
Os01g0761000 Oryza sativa ssp. japonica
Os07g0469100 Oryza sativa ssp. japonica
Os10g0536500 Oryza sativa ssp. japonica
Peaxi162Scf00207g00944 Petunia axillaris
Peaxi162Scf00313g00019 Petunia axillaris
PGR042G1617 Punica granatum
PGR102G2468 Punica granatum
PGSC0003DMG400011295 Solanum tuberosum
PGSC0003DMG400016532 Solanum tuberosum
Phvul.009G258500 Phaseolus vulgaris
Phvul.010G120100 Phaseolus vulgaris
Phvul.010G148600 Phaseolus vulgaris
Potri.001G184700 Populus trichocarpa
Potri.002G180400 Populus trichocarpa
Potri.003G052200 Populus trichocarpa
Potri.014G106400 Populus trichocarpa
Pp3c16_11960 Physcomitrium patens
Pp3c17_14680 Physcomitrium patens
Pp3c17_14681 Physcomitrium patens
Pp3c27_4510 Physcomitrium patens
Prupe.2G198900 Prunus persica
Prupe.3G066500 Prunus persica
Psat0s1479g0120 Pisum sativum
Psat0s1908g0040 Pisum sativum
Psat7g250040 Pisum sativum
PSO063G4719 Papaver somniferum
PSO210G1716 Papaver somniferum
PSO210G6925 Papaver somniferum
PSO782G3349 Papaver somniferum
QL05p021627 Quercus lobata
QL08p047468 Quercus lobata
RcHm_v2.0_Chr1g0361201 Rosa chinensis
RcHm_v2.0_Chr7g0217621 Rosa chinensis
Rhsim01G0181300 Rhododendron simsii
Rhsim08G0223600 Rhododendron simsii
Sabra02G0133800 Salix brachista
Sabra14G0078600 Salix brachista
Sc15g0001360 Simmondsia chinensis
Sc23g0001770 Simmondsia chinensis
Sed0011200 Sechium edule
Sed0016154 Sechium edule
Sed0022313 Sechium edule
SEGI_00717 Sequoiadendron giganteum
SEGI_17981 Sequoiadendron giganteum
SEGI_19315 Sequoiadendron giganteum
SGA_v2.0_scaffold68G22981 Striga asiatica
Solyc06g066620.4 Solanum lycopersicum
Solyc10g005050.3 Solanum lycopersicum
Sopen06g024890 Solanum pennellii
Sopen10g001080 Solanum pennellii
Sp1g38760 Schrenkiella parvula
Sp4g28850 Schrenkiella parvula
TAR624G0186 Trochodendron aralioides
TAR629G0296 Trochodendron aralioides
TAR636G2945 Trochodendron aralioides
THA.LOC104802098 Tarenaya hassleriana
THA.LOC104817403 Tarenaya hassleriana
THA.LOC104817981 Tarenaya hassleriana
Thecc.01G332500 Theobroma cacao
Thecc.06G092700 Theobroma cacao
Thhalv10000365m.g Eutrema salsugineum
Thhalv10001663m.g Eutrema salsugineum
TPR.G29426 Trifolium pratense
TPR.G4694 Trifolium pratense
TPR.G5224 Trifolium pratense
TWI12G1124 Tripterygium wilfordii
TWI14G0688 Tripterygium wilfordii
TWI59G0709 Tripterygium wilfordii
unitig_62.g23782 Utricularia gibba
vmacro12636 Vaccinium macrocarpon
vmacro18886 Vaccinium macrocarpon
VMungo0331G1249 Vigna mungo
VMungo0331G1955 Vigna mungo
VMungo1309G2068 Vigna mungo
Zm00001eb022040 Zea mays
Zm00001eb320280 Zea mays
Zm00001eb370480 Zea mays

User provided reference genes

Program Settings