Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p24250 Brassica napus
A05p42250 Brassica napus
Aa31LG5G15980 Aethionema arabicum
Aa31LG5G770 Aethionema arabicum
Actinidia02815 Actinidia chinensis
Actinidia23648 Actinidia chinensis
Actinidia28480 Actinidia chinensis
Actinidia33557 Actinidia chinensis
Ah.06g189550 Amaranthus hybridus
AL3G15940 Arabidopsis lyrata
AL6G52140 Arabidopsis lyrata
Aqoxy1G00406 Aquilegia oxysepala
Aqoxy3G03649 Aquilegia oxysepala
Aqoxy5G00696 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9D6GIC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9M2414 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AMR0WB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VCZ1SA Arachis hypogaea
AT3G05390 Arabidopsis thaliana
AT4G01240 Arabidopsis thaliana
ATR0051G002 Amborella trichopoda
ATR0706G163 Amborella trichopoda
ATR0827G183 Amborella trichopoda
Atru.chr5.571 Acer truncatum
Atru.chr5.590 Acer truncatum
AUR62000797 Chenopodium quinoa
AUR62005171 Chenopodium quinoa
BcaB04g21449 Brassica carinata
BcaB05g23961 Brassica carinata
BcaC03g16058 Brassica carinata
BcaC05g30128 Brassica carinata
BcaC05g30131 Brassica carinata
BcaC05g30150 Brassica carinata
BcaC09g47822 Brassica carinata
BolC1t05696H Brassica oleracea
BolC2t09838H Brassica oleracea
BolC5t34843H Brassica oleracea
BraA02t07414Z Brassica rapa
BraA05t23028Z Brassica rapa
C02p38240 Brassica napus
C05p61830 Brassica napus
CAN.G1034.52 Capsicum annuum
CAN.G78.134 Capsicum annuum
CAN.G856.3 Capsicum annuum
CANSAT54G2658 Cannabis sativa
CANSAT94G0016 Cannabis sativa
CARHR079730 Cardamine hirsuta
CARHR249060 Cardamine hirsuta
Carub.0003s0467 Capsella rubella
Carub.0006s3628 Capsella rubella
Ca_05117_v3 Cicer arietinum L.
Cc02_g33230 Coffea canephora
Cfa003863 Carpinus fangiana
Cfa006608 Carpinus fangiana
Ciclev10003882m.g Citrus clementina
Ciclev10013545m.g Citrus clementina
Ciclev10024550m.g Citrus clementina
CiPaw.01G068600 Carya illinoinensis
CiPaw.07G019600 Carya illinoinensis
ClCG03G017010 Citrullus lanatus
COL.COLO4_03894 Corchorus olitorius
COL.COLO4_06376 Corchorus olitorius
COL.COLO4_10487 Corchorus olitorius
COL.COLO4_27426 Corchorus olitorius
Cpa.g.sc11.64 Carica papaya
Cpa.g.sc48.73 Carica papaya
CsaV3_1G038910 Cucumis sativus L.
CSS0034265 Camellia sinensis var. sinensis
CSS0040893 Camellia sinensis var. sinensis
CSS0040894 Camellia sinensis var. sinensis
DCAR_005367 Daucus carota
DCAR_029397 Daucus carota
Dinv30781 Davidia involucrata
Dinv32527 Davidia involucrata
Dinv33851 Davidia involucrata
Duzib138G1600 Durio zibethinus
Duzib177G0077 Durio zibethinus
ECA236G1180 Erigeron canadensis
ECA236G4898 Erigeron canadensis
EL10Ac4g09395 Beta vulgaris
Eucgr.B01939 Eucalyptus grandis
Eucgr.D02328 Eucalyptus grandis
Eucgr.I02052 Eucalyptus grandis
FAN01G2370 Fragaria x ananassa
FAN02G3053 Fragaria x ananassa
FAN03G1578 Fragaria x ananassa
FAN05G5168 Fragaria x ananassa
FAN06G1569 Fragaria x ananassa
FAN06G2870 Fragaria x ananassa
FAN09G4287 Fragaria x ananassa
FAN10G0199 Fragaria x ananassa
FAN10G3648 Fragaria x ananassa
FvH4_6g06250 Fragaria vesca
FvH4_6g46550 Fragaria vesca
FvH4_7g15510 Fragaria vesca
Glyma.01G071000 Glycine max
Glyma.02G128200 Glycine max
Glyma.07G062701 Glycine max
Glyma.16G030800 Glycine max
Gohir.A07G181000 Gossypium hirsutum
Gohir.A08G127800 Gossypium hirsutum
Gohir.A08G209200 Gossypium hirsutum
Gohir.D07G187500 Gossypium hirsutum
Gohir.D08G149000 Gossypium hirsutum
Gohir.D08G226200 Gossypium hirsutum
Gorai.001G208400 Gossypium raimondii
Gorai.004G154700 Gossypium raimondii
Gorai.004G240200 Gossypium raimondii
GSVIVG01026979001 Vitis vinifera
GSVIVG01031090001 Vitis vinifera
HanXRQChr01g0002231 Helianthus annuus
HanXRQChr01g0002251 Helianthus annuus
HanXRQChr04g0120861 Helianthus annuus
HanXRQChr11g0339611 Helianthus annuus
Haze_04168 Corylus avellana
Haze_15572 Corylus avellana
Hma1.2p1_0335F.1_g128810 Hydrangea macrophylla
Hma1.2p1_1334F.1_g276300 Hydrangea macrophylla
Hma1.2p1_1555F.1_g290500 Hydrangea macrophylla
Hma1.2p1_1959F.1_g309080 Hydrangea macrophylla
Hma1.2p1_2026F.1_g311560 Hydrangea macrophylla
HPP92_005255 Vanilla planifolia
HPP92_013445 Vanilla planifolia
Lalb_Chr04g0255251 Lupinus albus
Lalb_Chr10g0096591 Lupinus albus
Lalb_Chr10g0099481 Lupinus albus
Lj2g0016918 Lotus japonicus
Lj3g0027285 Lotus japonicus
Lj9P124T11 Lonicera japonica
Lj9P128T38 Lonicera japonica
Lj9P589T29 Lonicera japonica
Lj9P590T42 Lonicera japonica
Lsat_1_v5_gn_7_2581 Lactuca sativa
Lsat_1_v5_gn_9_87001 Lactuca sativa
Manes.02G057900 Manihot esculenta
Manes.05G028400 Manihot esculenta
Manes.09G168800 Manihot esculenta
Mapoly0071s0103 Marchantia polymorpha
MBI07_g11738_MAGBIO Magnolia biondii
MD07G1130500 Malus domestica
MD12G1217000 Malus domestica
MD17G1063400 Malus domestica
MD17G1063500 Malus domestica
MD17G1063800 Malus domestica
Medtr0010s0400 Medicago truncatula
Medtr8g028460 Medicago truncatula
MELO3C015317.2 Cucumis melo
Migut.B01804 Erythranthe guttata
Migut.N01992 Erythranthe guttata
MSTRG.20866 Avicennia marina
Nitab4.5_0000915g0060 Nicotiana tabacum
Nitab4.5_0002144g0070 Nicotiana tabacum
Nitab4.5_0002344g0130 Nicotiana tabacum
Nitab4.5_0003501g0060 Nicotiana tabacum
Nitab4.5_0003830g0010 Nicotiana tabacum
Nitab4.5_0008283g0030 Nicotiana tabacum
Nn1g01715 Nelumbo nucifera
Nn3g17495 Nelumbo nucifera
Nn4g25924 Nelumbo nucifera
Oeu004420.1 Olea europaea
Oeu010634.1 Olea europaea
Oeu020843.1 Olea europaea
Os06g0474300 Oryza sativa ssp. japonica
Peaxi162Scf00020g00162 Petunia axillaris
Peaxi162Scf00037g00082 Petunia axillaris
Peaxi162Scf00037g00813 Petunia axillaris
Peaxi162Scf00045g10139 Petunia axillaris
PGR004G2710 Punica granatum
PGR031G1315 Punica granatum
PGR083G2451 Punica granatum
PGSC0003DMG400000071 Solanum tuberosum
PGSC0003DMG400014282 Solanum tuberosum
PGSC0003DMG400024699 Solanum tuberosum
Phvul.003G044100 Phaseolus vulgaris
Phvul.010G105300 Phaseolus vulgaris
Potri.002G165300 Populus trichocarpa
Potri.004G116900 Populus trichocarpa
Potri.013G019400 Populus trichocarpa
Pp3c13_19490 Physcomitrium patens
Pp3c3_20680 Physcomitrium patens
Pp3c4_15100 Physcomitrium patens
Prupe.2G178700 Prunus persica
Prupe.3G250700 Prunus persica
Prupe.6G323300 Prunus persica
Psat2g093160 Pisum sativum
Psat4g158040 Pisum sativum
PSO210G2953 Papaver somniferum
PSO210G3661 Papaver somniferum
PSO384G2016 Papaver somniferum
QL03p012834 Quercus lobata
QL04p055860 Quercus lobata
RcHm_v2.0_Chr1g0357841 Rosa chinensis
RcHm_v2.0_Chr2g0165191 Rosa chinensis
RcHm_v2.0_Chr3g0455271 Rosa chinensis
Rhsim01G0165800 Rhododendron simsii
Rhsim10G0055400 Rhododendron simsii
RhsimUnG0064300 Rhododendron simsii
RhsimUnG0135100 Rhododendron simsii
Sabra02G0146200 Salix brachista
Sabra13G0021800 Salix brachista
SalBow3G2002 Salvia bowleyana
SalBow3G4552 Salvia bowleyana
Sc09g0003060 Simmondsia chinensis
Sc23g0002520 Simmondsia chinensis
Sed0024173 Sechium edule
SEGI_01880 Sequoiadendron giganteum
SEGI_05590 Sequoiadendron giganteum
SEGI_12948 Sequoiadendron giganteum
SEGI_13553 Sequoiadendron giganteum
SGA_v2.0_scaffold98G29317 Striga asiatica
SMO143G0208 Selaginella moellendorffii
Solyc01g095190.2 Solanum lycopersicum
Solyc03g026030.1 Solanum lycopersicum
Sopen01g038980 Solanum pennellii
Sopen01g042880 Solanum pennellii
Sopen01g042890 Solanum pennellii
Sopen03g004860 Solanum pennellii
Sp3g04250 Schrenkiella parvula
Sp6g00880 Schrenkiella parvula
TAR362G0033 Trochodendron aralioides
TAR374G0806 Trochodendron aralioides
TAR375G0945 Trochodendron aralioides
TAR629G1576 Trochodendron aralioides
THA.LOC104817043 Tarenaya hassleriana
THA.LOC104818707 Tarenaya hassleriana
Thecc.01G351400 Theobroma cacao
Thecc.04G103700 Theobroma cacao
Thecc.05G310600 Theobroma cacao
Thhalv10020681m.g Eutrema salsugineum
Thhalv10028611m.g Eutrema salsugineum
TPR.G18146 Trifolium pratense
TPR.G2675 Trifolium pratense
TWI56G1200 Tripterygium wilfordii
vmacro20888 Vaccinium macrocarpon
vmacro22845 Vaccinium macrocarpon
VMungo0331G1608 Vigna mungo
VMungo1215G3430 Vigna mungo
Zm00001eb260260 Zea mays

User provided reference genes

Program Settings